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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0340700 |
| Transcript ID | LotjaGi2g1v0340700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-coumarate--CoA ligase family protein; TAIR: AT4G19010.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|Q84P24|4CLL6_ARATH 4-coumarate--CoA ligase-like 6; TrEMBL-Plants: tr|V7CLJ6|V7CLJ6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0340700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81763520..81767585) extracted from Lotus japonicus Gifu genome v1.2.
AGAACCAATTGCCGGGAGAAAATGTCATTTACCAAACATTCCATTGTTCCGATTTCGGAACATGATGCTGATGTTCTCTA TATATACCATGAGACATGGTTTTTGAAGTGGTAGCTTCACTCTTCTGCAACCACCTTGCTTCTCAAATCAATGGCGGCAA ACGTGAACTACGACGCCATGCCCCAAAACACTACCACTCACCCTCATTGGTACTCACCAAATTCCGGAATTTACCACAGC AAACACGCTTCCATGGAACTTCCCACCGACCCTTTTGTCGACGTTGTTTCCTTCATTTTCTCTCACCGTCATGATGGGGT TTCAGCCCTCGTTGATTCCTCATCTGGGTCTTCTATTTCTTACTCAAACTTGTTACCTTTGGTCAAATCCATGGCTTCTG GTTTGCACAAGTTGGGTGTTTCACAAGGTGATGTGGTTTTGCTTCTGCTTCCAAATTCCATTTACTATCCCATTGTGTTC TTGGGTGTTCTCTATCTAGGTGCTGTTGTTACACCATTGAACCCTCTCAGTAGTATCTATGAGATACGTAAGCAGATTAC TGAGTGTGGTGTGAGTTTTGCTTTTACTGTACCTGAAATTTTCAATAAACTAGAACCATTAGGCATTCCCATTGTTGCTG TGCCAGAGAATGAGAAGGGTTTGAAGCTTGGTTGTTTCTCAGGGTTTTGTAGCCTGGTTTCTGGCAATTTTGATTTGCCT CGGAGGCCGGTTATTAAGCAGGAAGACACTGCAGGTATATTGTATTCTTCTGGGACTACAGGGGTGAGCAAAGGAGTTGT TCTGACCCATAAAAATCTTATTGCTATGGTTGAGCTATTTGTGAGGTTTGAAGCTTCTCAATATGAATACTCTTGCTTGA ATAATGTGTTTCTAGCTGTTTTGCCCATGTTTCATATATATGGTTTATCGCTCTTCGGTATGGGATTACTGTCTTTGGGT TGTACGGTTGTTGTGATGAGGAAATTCGACATTGATGAGGTTATCGCGGTGATTGATAAATATAAAGTTACACACTTTCC TGTTGTTCCGCCGATGTTGACAGCATTGACAACAAAGGCTAAGGGTGTTAATGGAAGTAAGCTGCAGAGTTTGATACAGG TCTCCAGTGGTGCAGCGCCTTTGAATGCAGCGGTTATTGATGACTTTGTACAAACTTTCCCTAATATTGATTTTATACAG GTAAAGATCCTTGGAACAACTTACTATTATTTAAAGAATGCAAGTCATCTGCCAGCATCATCTAATTGCTTGATTTAATA CCATTTGGTGTCATTGTTGTTGTGATCTTGATGTAAGCTTAATGTTGATTTCATGACATTTCATTAGTTATGTGAGATTG TGGTGAATGAAATGGATCTTGGAAATACTAATAAACTTATACTGTTTAGTTTGCAATTTGCAAGAGCTACGCACAAGCAT TTCTAAGCAGGGAAGCATGTTTGATATATACTTATCCCCCCCCCCCCCCCCTCCCTTTCTCTCTGTGTGCATACACTAGC TTTTGAATTCTGTTTAATAGGTGATAGTTGATAGTTGATGCTCTTATTGTGCAATTGATATTCACATCAACAACTAATGC TGGACCATCAAAGTTTGAACTTCCATTATTTATAGCTTTATTGCTTTCCTAAATTTTAAAGAATCCACAACTGTTAGATT GTTTCTTTGTAGGGTTATGGAATGACCGAGTCGACTGCAGTAGGGACACGTGGCTTCAATAGCGAAAAGTCTCGGACCCA TTCTTCAATAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGATTAGTGGTGCATTTTTTCCCCCTGGTA GCAGTGGTGAGCTTTGGTTGAGAGGACCTTCAATTATGAGAGGTAAAAATATGTACTCTTTCCTGAGGTAGAAAGTATTG ACCTTATTCATTTATTAGGTTACCATTCTTTTCCTGTACTAAAACAATGATCCAATCGAAACCGGAAAAACATTGAGTTA GGTTGGGTTAATTTGTTCCCATATAGGGTTTGATCTGCTTACACCCCTAGAGATTATAAACTCATCTGTTACAATGTTTC TAGATTTGAATATAGTAATAGAATGAATGATTTAGTTTAACTTGATTTTATATAACTAGATGTTGCTTCTGTTGATAACT ATTTAGTTGAAAGATTCCCTGATACCTCCTTATCAGTAAAATGCTCCTGAATTTTTTTTTCTAGGCAACTGTTTAAGTCT GTTGTTATGATTGTTTCTATCATTTTCCTATATTAGAGGGGCGTGTTTGTTCCCTGATATTTCTAAATCTAATCAAAATA TATTTAAATTTTTCTAAAATTTCTCAGGATACTTGAATAATGAGGAAGCCACAAGTTCAACAATAGATAAAGATGGTTGG CTACATACTGGAGATGTTGTTTATTTTGATCAGGATGGGTATTTACATATATCTGACCGCTTGAAAGATATAATCAAATA CAAGGGCTTTCAGGTATCTGATAATATCTTGATTGATTTTGTTGCTTGTAAATTTCCAGCACCTTATTGGTGAGCATCTA GAATTTGTTTAAGCACTTCATTTACTTGGTAAATAGCTGCAAAAGCTTCTCATGTTCAAACATGAAATGTTTTTTGGGTT GATCAATTCATCTATAATTCTATATTGACTTACAATACATAAAATATGCAGTTAAAAAATAGAATTACTGACGATAGTAG ATTTTAATAATTTTTTCATAAGAAACTGTAAATCCTATTGTAAAGCTCTTTAATGCCTAGTAATATAAAGGATTACTTTT TAGGAGGTTAGGGGTCTGTTTCCCTAAAATATTTATCTATATATTGCGTGATCTTCAATCACAGGAGGATATGTTGTTTT AATATTTTACTTTTACACAATTTGTATGCATGCTATAATTCTTACCTATGCCTATGGCATGTGACAGATTGCTCCTGCTG ATTTAGAAGCTGTATTAATTTTGCATCCTGAAATAGTTGATGTTGCTGTTACAGCGTAAGTATCCAAATGCTTGTTTAAC TACTGAGTCCTACCTGCATGTGTACTGCTTTTATGAATTGAAAATATACCCGTTTCATTGGTTGCTGAGATATATGCTTT TTTAGGAATCCAAATAGCTACATCTTATAGCATGTTTGGATCACTTTCTCTTTTCTCAAAATCAATTTTGAAACCCTAAA GCTACTAACATAACATATGCCTTTTCTCAGACTTGATTCTAGCTTCAGAATCAATTGTAGAAAGATTTCCAAACATGCAC TTAGTCAGACACACTTTGTGAAGTTTCTTTTCGGCCATCAAAATATAACCTGAAGTGTTGCATCATTTTCCATTTCAGTG CCATGGATGAAGAAACTGGGGAGATACCAGTGGCATTTGTGGTCAAGAAGGTTGGAAGTGTGCTTTCTCCAAAGCATATT ATGGATTATGTTGCTGAGCAGGTTTTTCTTGATACGACAAACCATTTTACTTCACATTAAATACTTGAATTCAAGGACCT AGTGTCTGTAGAAAATGCTTTTCACATTTCAACTCTACTCTGGCAGGTTGCTCCATACAAGAAGGTTAGGAAAGTGATCT TCACTGACAAGATACCAAGGTCTCCCACAGGGAAGATCCTTCGGAAGCAACTGAGGAATTGCTTCACTTCTAAACTCTAG GCATTTTTTAGGACATGTCTCTAGTGGAATACTCTGAAAAATTGACAAGCACATTTATGAGTCGTGATTTGTTGCAGACA CAAATTTTGTCGACTATGATTGTGTTGATACATACATTGTCCAGTGTTATAGTGAAAAATTACCAAACGATAGATTTGAA TAGAGAATTATCCTAAACAGTTTGTCAATTATGATTGTCTTGATACATGAGGGTTAATAAAGAATCACGAGCCTTTGAAT CGATTGATATTAGAGTCATAACTCTTTTATTTAGAGTAAATATTATTTTATCATTTAAATTTATTTACTTTATGGTAAAC AATTGTTTAGAACGTGCTTATTGAATTATTAGCAAGTATCCTGATTCTCACATAAAACACAGCTGT
CDS sequence (LotjaGi2g1v0340700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAAACGTGAACTACGACGCCATGCCCCAAAACACTACCACTCACCCTCATTGGTACTCACCAAATTCCGGAAT TTACCACAGCAAACACGCTTCCATGGAACTTCCCACCGACCCTTTTGTCGACGTTGTTTCCTTCATTTTCTCTCACCGTC ATGATGGGGTTTCAGCCCTCGTTGATTCCTCATCTGGGTCTTCTATTTCTTACTCAAACTTGTTACCTTTGGTCAAATCC ATGGCTTCTGGTTTGCACAAGTTGGGTGTTTCACAAGGTGATGTGGTTTTGCTTCTGCTTCCAAATTCCATTTACTATCC CATTGTGTTCTTGGGTGTTCTCTATCTAGGTGCTGTTGTTACACCATTGAACCCTCTCAGTAGTATCTATGAGATACGTA AGCAGATTACTGAGTGTGGTGTGAGTTTTGCTTTTACTGTACCTGAAATTTTCAATAAACTAGAACCATTAGGCATTCCC ATTGTTGCTGTGCCAGAGAATGAGAAGGGTTTGAAGCTTGGTTGTTTCTCAGGGTTTTGTAGCCTGGTTTCTGGCAATTT TGATTTGCCTCGGAGGCCGGTTATTAAGCAGGAAGACACTGCAGGTATATTGTATTCTTCTGGGACTACAGGGGTGAGCA AAGGAGTTGTTCTGACCCATAAAAATCTTATTGCTATGGTTGAGCTATTTGTGAGGTTTGAAGCTTCTCAATATGAATAC TCTTGCTTGAATAATGTGTTTCTAGCTGTTTTGCCCATGTTTCATATATATGGTTTATCGCTCTTCGGTATGGGATTACT GTCTTTGGGTTGTACGGTTGTTGTGATGAGGAAATTCGACATTGATGAGGTTATCGCGGTGATTGATAAATATAAAGTTA CACACTTTCCTGTTGTTCCGCCGATGTTGACAGCATTGACAACAAAGGCTAAGGGTGTTAATGGAAGTAAGCTGCAGAGT TTGATACAGGTCTCCAGTGGTGCAGCGCCTTTGAATGCAGCGGTTATTGATGACTTTGTACAAACTTTCCCTAATATTGA TTTTATACAGGGTTATGGAATGACCGAGTCGACTGCAGTAGGGACACGTGGCTTCAATAGCGAAAAGTCTCGGACCCATT CTTCAATAGGGTTGTTAGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGATTAGTGGTGCATTTTTTCCCCCTGGTAGC AGTGGTGAGCTTTGGTTGAGAGGACCTTCAATTATGAGAGGATACTTGAATAATGAGGAAGCCACAAGTTCAACAATAGA TAAAGATGGTTGGCTACATACTGGAGATGTTGTTTATTTTGATCAGGATGGGTATTTACATATATCTGACCGCTTGAAAG ATATAATCAAATACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGAAGCTGTATTAATTTTGCATCCTGAAATAGTTGAT GTTGCTGTTACAGCTGCCATGGATGAAGAAACTGGGGAGATACCAGTGGCATTTGTGGTCAAGAAGGTTGGAAGTGTGCT TTCTCCAAAGCATATTATGGATTATGTTGCTGAGCAGGTTGCTCCATACAAGAAGGTTAGGAAAGTGATCTTCACTGACA AGATACCAAGGTCTCCCACAGGGAAGATCCTTCGGAAGCAACTGAGGAATTGCTTCACTTCTAAACTCTAG
Protein sequence (LotjaGi2g1v0340700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAANVNYDAMPQNTTTHPHWYSPNSGIYHSKHASMELPTDPFVDVVSFIFSHRHDGVSALVDSSSGSSISYSNLLPLVKS MASGLHKLGVSQGDVVLLLLPNSIYYPIVFLGVLYLGAVVTPLNPLSSIYEIRKQITECGVSFAFTVPEIFNKLEPLGIP IVAVPENEKGLKLGCFSGFCSLVSGNFDLPRRPVIKQEDTAGILYSSGTTGVSKGVVLTHKNLIAMVELFVRFEASQYEY SCLNNVFLAVLPMFHIYGLSLFGMGLLSLGCTVVVMRKFDIDEVIAVIDKYKVTHFPVVPPMLTALTTKAKGVNGSKLQS LIQVSSGAAPLNAAVIDDFVQTFPNIDFIQGYGMTESTAVGTRGFNSEKSRTHSSIGLLAPNMEAKVVDWISGAFFPPGS SGELWLRGPSIMRGYLNNEEATSSTIDKDGWLHTGDVVYFDQDGYLHISDRLKDIIKYKGFQIAPADLEAVLILHPEIVD VAVTAAMDEETGEIPVAFVVKKVGSVLSPKHIMDYVAEQVAPYKKVRKVIFTDKIPRSPTGKILRKQLRNCFTSKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 103 | 103 | - | – | |
| PANTHER | 12 | 554 | 543 | 3.6E-290 | – | |
| PANTHER | 12 | 554 | 543 | 3.6E-290 | – | |
| Gene3D | 26 | 453 | 428 | 8.7E-119 | ||
| CDD | 37 | 548 | 512 | 0.0 | – | |
| SUPERFAMILY | 52 | 554 | 503 | 5.76E-136 | – | |
| Pfam | 54 | 458 | 405 | 4.2E-100 | ||
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 104 | 126 | 23 | - | – | |
| Phobius | 127 | 245 | 119 | - | – | |
| ProSitePatterns | 203 | 214 | 12 | - | ||
| Phobius | 246 | 269 | 24 | - | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 270 | 556 | 287 | - | – | |
| Gene3D | 454 | 555 | 102 | 1.2E-28 | – | |
| Pfam | 468 | 542 | 75 | 6.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi2g1v0340700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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