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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0353400 |
| Transcript ID | LotjaGi2g1v0353400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein; TAIR: AT1G20823.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80; TrEMBL-Plants: tr|G7K2K6|G7K2K6_MEDTR Anaphase-promoting complex subunit 11 RING-H2 finger protein; Found in the gene: LotjaGi2g1v0353400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82986942..82988499) extracted from Lotus japonicus Gifu genome v1.2.
TGAAGAAAGCATAGCTTGGGGCAAGGTTTTGGTTATGTCCACTTTTGTCCCTCACCTCCCTACCCACTTGCCCTCTTAAG GGGCCACTTTATTGCTATGTACCCTACCAGACAAAGACCTCTTTCTTCAATTAACTTTCTCTCCCCCCCCTATCACTCTC ACTCTCTCTCTCTCTCTACCTTCTTGACTCTAGTCTTCTCCCTACCCTTAAACCCTTATCCTCAAATCAAACCCACTAAG CTCAAATATTTCCCCACTCAAAAATCATCATCCACCCCCAAACCTTCCCTTCTTTCAACCTATTAATACCTACCCCCAAT TATTTAAGCTTCTACTTCCAACTTCCATCCCAAACTCACCAAAACTCTCTCTACTTTCTCTTCTCTTTCCATCACTCTGT TTTGACTCTGTTTCTCCCCTGTTTCTCCTCTGTTTTCTCACAAATCAATTTCTTTCCTTTCCTTTTCCCTCTACTGAGAA AGATGACACGTGCGATGAGGATTCTCAATACGGCGGGAAAATCCGCCGCGGTGGCAGCTGCGGTGGCGCCACCGCCGGAG GCGGTGACTCTGGAGTCAGATTTCGTGGTAATCCTAGCTGCCCTTCTCTGCGCTCTGATATGCGTGGTGGGGCTCATAGC GGTGGCGCGGTGCGCGTGGCTCCGGCGAGTCACCGGCGATGGCGGCTACCCCACCCGGCAAGCTCTGGCTAACAAAGGAG TGAAGAAGAAGGTGGTCCAGTCGCTGCCCAAATTCGCCTACGCAGACAGCAGCCCGAGAGAGTGGCTGGCGACGACGGAG TGCGCGATTTGCCTGGCGGAGTTCGACGCCGGCGACGAGATCCGCGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGG CTGCATCGACACGTGGCTGGGGTCACACTCCTCTTGCCCTTCCTGTCGGCAGGTTCTGGCGGTGGCGGCGCGGTGTCAGA GGTGTGGGCGTCTCCCGGCCGCTAATAACAGCGGCGGTGGAGGAGCCACCAGTGTGGCGGTGAATGAACCGGAGTTGAAA TCCGGAGAAGACGAAAATGCCCCTGCTGTTAATAGTAACAATAATGCTAGTGGTAGCAGTGGAACAGAACATCACAGTCA CAACGTTAACAGTGGATTCTTGCCGTGACAAGAAAAAATAACAGTTGTAGTTTTTGTATGTATTAGCAGGGTTAATTTGG TACTTTTCTTAGTCTATTGAGCTTGAACTTGATCGGAATCTGGGAAATTTTTTCGCTTTTGTAATAATACATTCCTAATC TTTGTGCAAATTTTACTTCGTTTTTTTACTTTTTACTTTTTACAACATCACATTTTATTTTTCAGAGCTTATGTTTGTGG ATAATGTGTATATTTGTGGGGTATTTTTGGTAATTAACCGCGATATTAAAGTGAAAGGTAAAAAGTTTGGATAAGGATTG TTATTAATTTATTATTATAGAGTTTAGGGAATTTTATTTTATCTTATTAGATACTATGAGGTTATAATATAGAAAAGGTC ATATGATTGTGTAAAACATGTTTAATTGAAATGATTGG
CDS sequence (LotjaGi2g1v0353400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACGTGCGATGAGGATTCTCAATACGGCGGGAAAATCCGCCGCGGTGGCAGCTGCGGTGGCGCCACCGCCGGAGGC GGTGACTCTGGAGTCAGATTTCGTGGTAATCCTAGCTGCCCTTCTCTGCGCTCTGATATGCGTGGTGGGGCTCATAGCGG TGGCGCGGTGCGCGTGGCTCCGGCGAGTCACCGGCGATGGCGGCTACCCCACCCGGCAAGCTCTGGCTAACAAAGGAGTG AAGAAGAAGGTGGTCCAGTCGCTGCCCAAATTCGCCTACGCAGACAGCAGCCCGAGAGAGTGGCTGGCGACGACGGAGTG CGCGATTTGCCTGGCGGAGTTCGACGCCGGCGACGAGATCCGCGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTGGGCT GCATCGACACGTGGCTGGGGTCACACTCCTCTTGCCCTTCCTGTCGGCAGGTTCTGGCGGTGGCGGCGCGGTGTCAGAGG TGTGGGCGTCTCCCGGCCGCTAATAACAGCGGCGGTGGAGGAGCCACCAGTGTGGCGGTGAATGAACCGGAGTTGAAATC CGGAGAAGACGAAAATGCCCCTGCTGTTAATAGTAACAATAATGCTAGTGGTAGCAGTGGAACAGAACATCACAGTCACA ACGTTAACAGTGGATTCTTGCCGTGA
Protein sequence (LotjaGi2g1v0353400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRAMRILNTAGKSAAVAAAVAPPPEAVTLESDFVVILAALLCALICVVGLIAVARCAWLRRVTGDGGYPTRQALANKGV KKKVVQSLPKFAYADSSPREWLATTECAICLAEFDAGDEIRVLPQCGHGFHVGCIDTWLGSHSSCPSCRQVLAVAARCQR CGRLPAANNSGGGGATSVAVNEPELKSGEDENAPAVNSNNNASGSSGTEHHSHNVNSGFLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 177 | 177 | 7.8E-78 | – | |
| PANTHER | 1 | 177 | 177 | 7.8E-78 | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| Phobius | 14 | 22 | 9 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 36 | 9 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 37 | 59 | 23 | - | – | |
| Phobius | 60 | 221 | 162 | - | – | |
| Gene3D | 68 | 154 | 87 | 1.3E-22 | ||
| SUPERFAMILY | 84 | 156 | 73 | 2.52E-21 | – | |
| SMART | 103 | 161 | 59 | 0.0061 | – | |
| CDD | 106 | 149 | 44 | 3.23312E-17 | – | |
| Pfam | 106 | 149 | 44 | 4.3E-15 | ||
| ProSiteProfiles | 107 | 149 | 43 | 12.43 | ||
| SMART | 107 | 148 | 42 | 4.0E-8 | ||
| MobiDBLite | 185 | 221 | 37 | - | – | |
| MobiDBLite | 192 | 221 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0353400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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