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LotjaGi2g1v0358400.1

Overview

Field Value
Gene ID LotjaGi2g1v0358400
Transcript ID LotjaGi2g1v0358400.1
Lotus japonicus genome version Gifu v1.2
Description Cyclic nucleotide-gated channel; TAIR: AT2G28260.1 cyclic nucleotide-gated channel 15; Swiss-Prot: sp|A0A072VMJ3|CN15C_MEDTR Protein CNGC15c; TrEMBL-Plants: tr|V7AJJ6|V7AJJ6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0358400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:85548867..85555320) extracted from Lotus japonicus Gifu genome v1.2.

GCTTTGGGATGTTCAACTATTGGTCCTTTATCTTTTTTTTTTTTCGAAAGGAGAAAATATATATAATAATAATGAGGAAA CTGATAAGATATACACCAAAACAACCTCAACACGGTATCAAAAACCCACACGACCAAGGCTGCCCACCAAAAAGAACAAA AAAAAAAACCAACCCAAAACAGCGGCAAATAAGAACAATAGCCTCAAAAACTAGAAGCCGCAATTGCAACAACTACAAAA ACCAAAAGTCGTTTGCAATACCCAAAAAACTCTCAAAGGACTAGGAAAAAACCTATACAGCCCATAACTCGCCACCACCC CAAATCTCACCCTCAACGGCGCAGAGAAGCTTTCCGCGCCTTGATCTCATTGGCAATTTGAAAGAGAGGGATATCATGAG GGCAATCATACCTCAAGCCTAAGCGCTTCCCCATCAAGACGGCACTCCTCGCTCTAGTCAATACGCCATAAGGCTCCGAC ATCTCCGTCGGCAACACCATCAGCTCTTTCCCTGTCTGCTCTGCATCAGTATAGCCTGCTTCCATTGTCATAGCACCACC AGAGCTCCCAGCAGCACCTTGCTTCTTTCTGCCTCCACCATCACCAAAGCCCCTAGCATCCGCAGAAAGCTCCACCGTCT CAATACCCCTAACATCCGCAGAAGAGGTTTCTGGGAAAAGCACCGAAGTTGAGAAGCTTGGGGATGGCGAGCCGCCTCTA AAGAGGCCAGAAATCATCAATTCTTCACTCTCGGAAGAAGACAACAGACGTCGATTCCCCGATTCCAGCAAGAACCCCAG CATGCTCCGACGATCTCTGATCTCTAGCCGCAAACACCCTCGAACCAGCAACTCCACGCCGCGGAAATCTCGCCCAAGCA ACCGACAATGGCGTTCCTCCCAAACGAAACCCATCGAGGAGGTTAATCGCCTGAGAAGCAACCTCCAAAGAAGAGAATCT AGCAAACCCGAACCTATGGCTTCTCCCAATCTTCCTCTGTCTCTGGATAAAGACATTCAAAACCCTCCCAATCTGAGCAA AAAGACCACGAACCTGGAGATAATTGACGCCGTCAGAAATGCCATCAACGAAAAGGGTGAAGATCGAATTACAGTGGAGG TTATTCTCCTTCTCCAAACCGACGTCGTCGCTCCTCGAGAAGCCGCTGCACGCAGCTACTTTCTCCTCCCTTCGAACCTG GATGGAAGCGTCTTTAGCTTTTTCTCCACCCAGGAGAAAGCCGTTTTTCTTCCTCCGGTCAGAACCGTCTCCGTCGCTCG TCGTCTCGCCGCCATCTCCGTCGCCTTCTGCTTGGGTATCCTCCTTGGAGGGAGATCCGCCGCCATCAGAGTTTGGAGCC CTAGCAGAGGTGGGTTCACGACTCATTTTTTAAGCTTGTGGGAATATCAAACCCCATGGTCCTTTATCTTTTACTAATAC TAATACAAATATCTTCAAATCTTGTTCGAGCGGGGAACACCCTGGTGTTGATCTTTAATAAAAATTGAAAATACAAGCAT TAATCTTTCTTGTATGTTCTATTCATTGTTCACAAGTATCCTAATCTAGGAAACATGGATAGATTTTTACTTCTGTCATG GTCTAAATGCCATCCTTGGTCAATTTCACTAGGAAAAAGGCTCAACATTTAATGGTTGATCCAACAACAATCTATTATTT AATTCCATTTTTCTTGCTCTCAGCTTCATTTTATTGATTGAGAGAAGTTGACACTTCTGAAAATCTGGCATGGCTTCTGG TATTTCAAGATTTCTAAGGTGAGTCTCTTTCTTAGTGTTTTTCAAGTTCCAATTTCTTTTGTACTACTTTAAAATATTGA ACTTCTATGCTAATCCTTTAATATAATGTTTCACATTTTAGTTTTCAAGATGACCATGAACTTCAAAAACTCCCAGCAAC TAACGATGACAATGGAATCAAGCTTAATGGAAACCAAGTAGTTGAGCCTAGTGCCAGAAAGGGTCAGAAGAAGGAACTAA AGAAAACAAGAAAGTTCTTGAAAGCTAGAGTGTTGTCAAGAGTATTCTCAGAGGACTATGAGAGAGTAAAAAGAAGAATA TTAGATCCCCAGGGACAAACCATTCACAAATGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGACCC TCTGTTCTTATATTTGCCACTAGTTAGAGATGAAGTGTGCATCGATATTGGAATAGAACTTGAAGTTACCCTCATAGTTA TCAGATCAATGGCAGATTCCCTTTACATAATTCAGATTCTCATGAAGTTTCGTACGGCTTATGTCGCACCTTCTTCGCGC GTTTTCGGAAGAGGAGAACTTGTTATAAACTCTTCTAAGATAGCTACTAGGTACCTAAGAAAAGGTTTCTGGTTAGACTT TGTTGCCGCACTGCCTCTTCCTCAGGTAAGTAACTGAAATTACACGGGAATCTGAATATAAGAGAAACTATATCTTTACG CAGATTAGGAAATATCTGTGGTATTGACACGTAATTAGGAAACTAATCTACGTTACCCTATATTCCTGATTTGATAATGT AATGCGCTATACAGAGTTTCCTATGAGTTTTGTAATTAATATCATTACAGTATCACATATATTTCCTAATATGAGTATGA GTAGTGATATAGTTTCTCTTATCCTCATTCTTCTATATAAATCTTCCTTTATCTTAAACAAAACCATGGTGTTATACCTT GATAAGTATGCTATTCTGTTATGTTTATTGCAGGTGTTGATTTGGATTGTCATTCCCAGTCTTGGAGGTTCAACCATGAC AAACACAAAAAATGTCCTTCGCTTTATCATCATCTTCCAATATTTACCGAGGCTATATCTGATTTTTCCACTTTCCTCCC AAATTGTAAAAGCTACTGGGGTTGTGACAGAAACAGCATGGGCAGGTGCTGCTTACAACTTGATGCTTTACATGCTGGCT AGCCATGTAAGTAGATGAAAAGAAATTTTCTTGAGTTGCTACTCTTTTTCCTTTTTCATGTATACTTAAATTCAGTTTTA TATTAAGAGGAAAATTTTGATGTCTTGACCAAATTCCATGTTATAAGAGGTGCAGTGAAGACATGTGGCAAATTAATTGG TTAAGCTGAGGTTCAAGGGCTTCAATTTTCTTGATTCAAGTAGTTTATGCCAAGCTAAACTAAAATTTGTTCTGTTTCAA CTGTTTTTCCTAAGTTGATATTTGTACCACTTGAAATTATCTGTTTTAGTGACATATCTACAACTATTATCTACCACTAA GTGCTTGTTTGAAAATCTTTCTACCAGCGTGTTTGGATACGCATCTGGCACACACTCCAAAACACGTTATTTAAAAAGCT ACACATTGTTTCTTGTGATTTACCGCGATTTTCTGGCTAGATGCTGTTTCTAGAAGTGAAATGTAACACCGAAACATGCT ATAGATTCCATAGCTTTGTTTAGGCATATAGCTTAGTCTTGCAAAATTGATTTGAGGATTGGTTGTTACCCAATTCTTCT CTTTTTTATGGGGAACAAAGTATATATGTACAAATGTACTACATTAATGATGCAAAGAAAGTTAGTATACAGGATGTACT GAACTGCACTCATACTTCTTTTTATTGATTGAAGATTTTAGGAGCTTGCTGGTACCTTTTATCAGTTGAAAGACAAGAAG CATGCTGGAGGAGAATTTGCGAGTTGGAGTCTTCTTGTCAATTTGAATTCTTTAACTGCAATAGAGTTATAGATTCCCTC AGGGTCTCCTGGTTTGTCACAAGTAATGTCACAAATTTATGCTCACCAAATGCTAAATTTTATCCGTTTGGTATATATGG TGATGCAGTGACATCCAAAGTTACAACTTCACCATTTTCCAATAGGTACTTCTTTTGTCGCTGGTGGGGACTGAGGAATC TGAGGTTAGTATTGTTGGGGTTCTCCTAAGTGCCATTTGCTACCATATTTCCACAATTCCACCTAAGTTGAGCATTAATA TTATCATCTTTTTTCCACTTAGAAAAAAGAGCAAAATTTCTCATTAGACACATGACTTACTAATAGCTCTGTTTCATTCG TTGAGAATTACTGAGTTTCTGATTGGTGGATGCAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTTTGTTGGAGAAAT AATGTTTGCCATTGTCGTTGCAACCCTTGGATTGGTTCTTTTTGCATTGCTTATTGGTAACATGCAAGTAAGTAACTCAA ATCTCTCAAATTTGATATCCTTTAAATATATACCATCCATTTCTCTTTTAATGGATTGAAAATGATAAGAAAATGCATGA AGGTAAGGTCATAACCAGCTTTTATATTACCCAGACTCATATTGTCAATGTCTGTTTGGATACCAGTTGAGTATAATGTG AACTGACTTTCATCTCAATCCAAGAGAAGAGTTATGTTAACTTTTTATCTTGAAATGAATGCTAAAATCCGTTTGGAATA GTGCCCTTAATTGTTTGGAGGGTTTATTTTAGTCCCGTGCGTTGCATGAGTTAGTTTCAGCACAGCTTATAACTACTAGT AGTACGACAGAAGACACTTTGCATGATGTATGCTTAAATCATATCCTTCTTCAGAAATTACATATGAGAATTTGAGCCAA AAAATCAACCTCAAGTTCTTGTAATTTTAATTTTCCACATATAAATGTCAGAAAATAGTTCACCATTATAAGTAATTGAC TTTGTTCAATAGGTGTCCTAATATAATTCACATTTTGACAGGGATACCTCCAATCAACAACTGTCAGGTTAGAAGAGTGG AGGGTGAAAAGAACTGATACAGAGCAATGGATGCATCACCGGCAGCTACCTTCAGAACTAAGACAATCTGTGCGCAAATA TGATCAATATAAATGGCTGGCAACACGAGGAGTAGATGAAGAAACTCTTCTCAAAGAACTTCCAGTGGATCTTCGGAGAG ACATCAAGCGCCACCTTTGTCTTGAGCTAGTTCGAAGAGTAAGTCAGCTACATACAACAAATTTCATTTGTTCCAGAAAT AGCTTTCAATCCATTCAAATTAAGACCACAACTAAGAAGATACGTAGTTTTATATCTGAAACATTGCTTTCTTTTGTTTG CACCACAAACTCACTACCAGGTGAATCAAAAAGGAAAACTGATTACTCAAAGCAATGAAACTACAATGGTTACTATTGAC CAGTTAGTTACAATAACAACCTCTCCTTATAAGGTCTAGTTTCTATCAGAATGCCATGAATCAACCCTCAGAAAATTTAA GATTTAAGCTGAAGGATCTTATATTATATTTCTAACACGTCTTTTCACACAAAAGCCTATTGGGCTTCAAGAGCGGACAA TACACTACACAGGCTAACCTCTATCTGTTGGTCAATTTATTTTTTCCTTCGAATATTGATGGTAATAGGAATCGAGCTTT AGACCACTTTGGTCATAGAGGACCATTTTATGAACTAACTATACCAAAAACTTGGGTAAACACACACAATGATTCTAAAT TATGTTTCTAACAATGAACAGGTGCCATTGTTTGACCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGACTAAA GCCTGCATTGTGCACAGAAAGCACATGTCTAGTTCGTGAGGGTGATCCAGTGAATGAGATGCTCTTCATAATCAGAGGGC ACCTTGACTCATACACCACCAACGGAGGCCGCACTGGTTTCTTCAACTCGTGCCGCATTGACCCAGGTGATTTTTGTGGC GAGGAGCTTCTGACATGGGCCTTGGATCCACGACCAAGTGTCATCGCCCTTCCTTCTTCCACTCGAACGGTGAAGGCCAT ATCAGAAGTAGAGGCCTTTGCCCTCATAGCAGAGGACCTCAAGTTTGTTGCATCACAGTTCAGAAGACTGCACAGCAAGA AACTCAGGCACAAGTTCAGGTTTTACTCGCACCAATGGAGAACGTGGGCCGCATGTTTTGTGCAAGCTGCGTGGAGACGG TATAAGAAAAGAAAAGAAGCTGCTCAAGTGATGAGGGCCTGCAGGGAGAATGCCTCAGTTGCTGAGGCAGAAACACCAAC GTTTGTGTATGCAATGAGGAGCACAAAGCAGGTTGTCAATGTGCATTCTTCTGGAGTTGTTAACTCTTTCCAGAAGCCAA CAGAACCTGACTTCTTTGTTGATGAGTAATAACTAGGAATTAATTTTGTTGCAACCCCAAGACTTTGTTTGGATTAGAGG AAAATATCATAGTATTGTTTAAAAGAGGATAGATCCTAATGGAAACCTATTATACATATTCCCATCATGTTCCACTTCTT GACTTAACTATCAAATTGATCCCTCTATTGTCACTTGCTTCCATTTTCTTCCCGGAAAAAAACTTTGCTTTTTGTCTTAA TATTTAGGGGAATGTTGACTTTTTACTCCACACTCAATGGTGAAGCTTTGGTGA 

CDS sequence (LotjaGi2g1v0358400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTGGTATTTCAAGATTTCTAAGTTTTCAAGATGACCATGAACTTCAAAAACTCCCAGCAACTAACGATGACAA TGGAATCAAGCTTAATGGAAACCAAGTAGTTGAGCCTAGTGCCAGAAAGGGTCAGAAGAAGGAACTAAAGAAAACAAGAA AGTTCTTGAAAGCTAGAGTGTTGTCAAGAGTATTCTCAGAGGACTATGAGAGAGTAAAAAGAAGAATATTAGATCCCCAG GGACAAACCATTCACAAATGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTCTGTTCTTATA TTTGCCACTAGTTAGAGATGAAGTGTGCATCGATATTGGAATAGAACTTGAAGTTACCCTCATAGTTATCAGATCAATGG CAGATTCCCTTTACATAATTCAGATTCTCATGAAGTTTCGTACGGCTTATGTCGCACCTTCTTCGCGCGTTTTCGGAAGA GGAGAACTTGTTATAAACTCTTCTAAGATAGCTACTAGGTACCTAAGAAAAGGTTTCTGGTTAGACTTTGTTGCCGCACT GCCTCTTCCTCAGGTGTTGATTTGGATTGTCATTCCCAGTCTTGGAGGTTCAACCATGACAAACACAAAAAATGTCCTTC GCTTTATCATCATCTTCCAATATTTACCGAGGCTATATCTGATTTTTCCACTTTCCTCCCAAATTGTAAAAGCTACTGGG GTTGTGACAGAAACAGCATGGGCAGGTGCTGCTTACAACTTGATGCTTTACATGCTGGCTAGCCATATTTTAGGAGCTTG CTGGTACCTTTTATCAGTTGAAAGACAAGAAGCATGCTGGAGGAGAATTTGCGAGTTGGAGTCTTCTTGTCAATTTGAAT TCTTTAACTGCAATAGAGTTATAGATTCCCTCAGGGTCTCCTGGTTTGTCACAAGTAATGTCACAAATTTATGCTCACCA AATGCTAAATTTTATCCGTTTGGTATATATGGTGATGCAGTGACATCCAAAGTTACAACTTCACCATTTTCCAATAGGTA CTTCTTTTGTCGCTGGTGGGGACTGAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTTTGTTGGAGAAA TAATGTTTGCCATTGTCGTTGCAACCCTTGGATTGGTTCTTTTTGCATTGCTTATTGGTAACATGCAAGGATACCTCCAA TCAACAACTGTCAGGTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAGCAATGGATGCATCACCGGCAGCTACCTTC AGAACTAAGACAATCTGTGCGCAAATATGATCAATATAAATGGCTGGCAACACGAGGAGTAGATGAAGAAACTCTTCTCA AAGAACTTCCAGTGGATCTTCGGAGAGACATCAAGCGCCACCTTTGTCTTGAGCTAGTTCGAAGAGTGCCATTGTTTGAC CAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGACTAAAGCCTGCATTGTGCACAGAAAGCACATGTCTAGTTCG TGAGGGTGATCCAGTGAATGAGATGCTCTTCATAATCAGAGGGCACCTTGACTCATACACCACCAACGGAGGCCGCACTG GTTTCTTCAACTCGTGCCGCATTGACCCAGGTGATTTTTGTGGCGAGGAGCTTCTGACATGGGCCTTGGATCCACGACCA AGTGTCATCGCCCTTCCTTCTTCCACTCGAACGGTGAAGGCCATATCAGAAGTAGAGGCCTTTGCCCTCATAGCAGAGGA CCTCAAGTTTGTTGCATCACAGTTCAGAAGACTGCACAGCAAGAAACTCAGGCACAAGTTCAGGTTTTACTCGCACCAAT GGAGAACGTGGGCCGCATGTTTTGTGCAAGCTGCGTGGAGACGGTATAAGAAAAGAAAAGAAGCTGCTCAAGTGATGAGG GCCTGCAGGGAGAATGCCTCAGTTGCTGAGGCAGAAACACCAACGTTTGTGTATGCAATGAGGAGCACAAAGCAGGTTGT CAATGTGCATTCTTCTGGAGTTGTTAACTCTTTCCAGAAGCCAACAGAACCTGACTTCTTTGTTGATGAGTAA 

Protein sequence (LotjaGi2g1v0358400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASGISRFLSFQDDHELQKLPATNDDNGIKLNGNQVVEPSARKGQKKELKKTRKFLKARVLSRVFSEDYERVKRRILDPQ GQTIHKWNKIFLVACLVSLFVDPLFLYLPLVRDEVCIDIGIELEVTLIVIRSMADSLYIIQILMKFRTAYVAPSSRVFGR GELVINSSKIATRYLRKGFWLDFVAALPLPQVLIWIVIPSLGGSTMTNTKNVLRFIIIFQYLPRLYLIFPLSSQIVKATG VVTETAWAGAAYNLMLYMLASHILGACWYLLSVERQEACWRRICELESSCQFEFFNCNRVIDSLRVSWFVTSNVTNLCSP NAKFYPFGIYGDAVTSKVTTSPFSNRYFFCRWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATLGLVLFALLIGNMQGYLQ STTVRLEEWRVKRTDTEQWMHHRQLPSELRQSVRKYDQYKWLATRGVDEETLLKELPVDLRRDIKRHLCLELVRRVPLFD QMDERMLDAICERLKPALCTESTCLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIDPGDFCGEELLTWALDPRP SVIALPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKKLRHKFRFYSHQWRTWAACFVQAAWRRYKKRKEAAQVMR ACRENASVAEAETPTFVYAMRSTKQVVNVHSSGVVNSFQKPTEPDFFVDE 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 89 89 -
PANTHER 22 689 668 0.0
PANTHER 22 689 668 0.0
SUPERFAMILY 78 400 323 4.97E-29
Pfam 87 405 319 2.3E-27
Phobius 90 108 19 -
Phobius 109 127 19 -
Phobius 128 146 19 -
PRINTS 142 151 10 1.5E-6
Phobius 147 178 32 -
Phobius 179 200 22 -
TMHMM 179 201 23 -
Phobius 201 211 11 -
Phobius 212 229 18 -
TMHMM 213 235 23 -
Phobius 230 249 20 -
Phobius 250 271 22 -
TMHMM 250 272 23 -
PRINTS 259 269 11 1.5E-6
Phobius 272 373 102 -
PRINTS 347 364 18 1.5E-6
TMHMM 370 392 23 -
PRINTS 373 384 12 1.5E-6
Phobius 374 392 19 -
PRINTS 391 400 10 1.5E-6
Phobius 393 690 298 -
Gene3D 404 469 66 3.0E-14
SUPERFAMILY 408 604 197 2.9E-33
PRINTS 441 448 8 1.5E-6
Gene3D 476 597 122 6.4E-38
SMART 478 610 133 9.7E-10
CDD 478 610 133 2.53574E-14
ProSiteProfiles 478 563 86 11.65
ProSiteProfiles 615 644 30 6.668

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
Molecular function Voltage-gated potassium channel activity Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Biological process Ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Biological process Potassium ion transport The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0358400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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