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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0364000 |
| Transcript ID | LotjaGi2g1v0364000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|V7C741|V7C741_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0364000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86155564..86163580) extracted from Lotus japonicus Gifu genome v1.2.
GAATATATGTAAACTAGTGGCTAGTAAGGAGTATTCATTGCAAGTTGCAACCCTATGAGTATGAGGCTTTCATCCACCGC CACCCTGAAAACCTTTCGCCAGATCTTCCGAAATGGCATGAGCGTTAACATTTACAACTTCAGGATCCGCGGCTTCGCCG GCGCTGGAAACTTTGAATCAGAATCGGCATTGATAGTGGCGAGATGCAAGGAGAAGAAGGTGCGGGAAGCGTTTGGGTTG TGGAAAGCCATGACTGACAAGGGTGTGGAGCCAAATTTGGTTTCGCTGAATGCGGTTATTCAGGGGTTGTGCGAAGAAGA ACGGATGGAAGAGGCTGAGGAGGTGGTTGAGGAGATGAATCGGAAGGGTTTGACCCCTGATGAGAACACTAACATGTCTC TGTTTCCGGTGCGAAGCAGATAAGGCTTATAAGGTTTTGAGTGAAATGATTGTTAGAGGTTTGTCACCATCTGTCGTTAT ATACAACAAGCTTGTTAGTGCATATTGCGTCGGAGAGAGAGAGAGAGGGTTGAGAAGGCTGTGGGGATTTTGAGGGTCAT GGCTAAGAGGGGTTTGTCCCCTGATGCTGTTAGTTATACCACTGTTATATCTGGGTTTTGTTATCTCGACGAGCCGGAGC TGGACAAGGCGCTTGAAATGAAGGCGGAGATGCTTCACAAGGGCATCTTACCACGTATGCCTGTGCCTGGAGGGAAGCTT GTCCAAAGCATTTGATCTCTTCCTAGAGATGCTGCGCGGGGGTGTGTTGCCAGATAAGCTTACTTATTTTATATTGATGA ATGCTTATTGTCTTGAAGGTAAATTCTGTAAGGCTTTTCATATGCATCATGAGATGACACACAAGGGTTTTTTGCCTGAT TTTGTTTCTGGGTTTTCACCCTCTCTTGTTACATACAATGCGCTTATTCATGGACTTTGCCTTTTGGGGAGGGTTGAGGA GGCTTTGGGGATTTTGAGGGGCATGGCTGCGATGGGTTTGCCCCCTGATGCTGTATGTTATACCACTGTTATATCCGGGT TATGCAAAATCGGGGAGCCGAGGAAGGCGTATGAATTGAAGTTGGAGATGGACGGAAAGAACTTCTGGTGGCTGGATCTA GACACATATGACTCGCTTATGGAAGACCTGTCGGATGAGGATATTTATTCTAATATGATGAATGATTATTTTGCTCAAGG TAACATGAAAAAGGTTTATAGATTGGATTATGATATGAAACACGATGGTTATTTAACTAGTGACGTTATCTTTCGTGTGT ATCTGAATGCACTTAATAAGAAAGCCAGGACAATAGATGCTAAGAGGACCCTTCTGGATATGATTTATAAAAACTTGTGG ACTAAGCCATCTTATTTTACATATGATACTCTGATAGAGAACTGCAGTAATAATGAATTTAAGAGTTTGGTAGGGCTTGT CAAAGATTTCAGCATGAGGGGTTTAGTGGGTGATGCCGGCAGAGCTCGTGACACAATGCTTCACGGGAATTATAAGCCAG AGGGATCAGTTTATAATTTATTAATATTTGATCATTGTAGATCTCATAGTGTTAATAAGGCATATGATATGTACAAGGAG ATGGTGCATTATGGCTTTGCTCCTCATATGTTCTCTATACTTGCTGTTATTAAGGCTCTACATTATGATAGAAGGTACAA TGAGATGATGTGGGTAATTAAAAACACATTGAAGAGCTGCAATCTCAATGATTCTGAGCTACGTAAAGTACTTAACAAAA TTAATGTCAGGGAATGTGATATTGATGCTCTTTTGGATGTGCTAGCTGAAATAGCCATGGGTGGTCTGTTACTTGATGGT GGAAAGTGTTCATATGCTTCAGCAAGTACCTAATATCTTTGGTTCTGCTTGTTGAACTCTGTTATCATAAACCTTGAGCT GACCCTTCCACCTTGCATCTAGCATGATTTGGCTTGGAGGCTTGCAATATGGAAAGTTTTCCCTTGTTAGGAAAGCAATT TATCATCTTTTACTTGGAACTCTACAGCTATCAAAGACCTCCTTCTAGACCAGGTCGTTCAGATCTTTTTTTTTTTAATT GTCAAGTATGAAGTTACTTGCTTTCAGTCATAAGTAGAAATCAGTAGCTTGGTATTTTTTTAACCAAAAGGTCTTTCTAA CTCTTGCTAAATTACTTTCAGGTTGGTGGGAATCATGTTTTATGATTTTATGAATTTCAATAATTTTGAATGAGGGTTGC TGAAATCAACAAAGTATTATCTGACATGATCTGTCATTTATTATTTCACATGAATGATAAAATTTAAATCTGTTCTCCCT AAACTCCCAAGGTCCCAAGCTCATAGGGTAAATCAGTAAGCTGGGGTCCGGGATTGAAGATGTTGGGGGGTTTCACTAAC TCAAGTTCTTTCTGTCTTCTTGTAGACTCTTTTCTTGTCCCTTGGGTTGTTGGGGGGTTTCACTAAAATTATGTGTCTTA TTACATGTTAAATGCGGTAATAATTGCTCTTCAGAGGTTACGGGTGGCTATTTACCGTTGGGAGTTATTGTGCTCAGACC CTTGGGTTCCCAACGGTGAACCAACGGCTTCTAGGGCCAGAGTACTTCGAAGGACGGTTTTTAGGAGATGCTATGCATTT GGTCCCTTCTTTTCGACCGAATTGTCGCTATGCGAGAACTGGGGAGGGACACAACCCTCCAAGCCCTTAAGCGTGTGCGC TTAATGGACTTTAAGATAAGATTTCCTTTTTGATCCGGTTGTTTAGCTATCTGATAACTCGTGAGGGACACTGCTATCCA AGCCATTTAGCGTGTGCGCTTGATTGGCTTTAAGATAAAACTCATGCAAAAGCTAAAAACTTTATGACTGAACCACCAAC TGTATAAAACTGACACCCAGATGGAGAACATTGCTCCATAGTGCAGAGCTTGCTGCAGCTGAGAATTTGATGTTCATTGG TGTCATAGTTTTGTGATTTTCTAGAGTTTACTTCTCATCATATTATCAGTAATGTAATATCATCCCTTCCTTTTGTCCTT TGTTGAGATTTGACTGGTTATCATTACAGCTATAACATGTTTGGATGAGGTTCTCTTACCTGAATTAAGTCTGAAGTTTA GAGCTACTCACCCAGATTTGATTCTGACTACAAAATCAATTATGGAAGAGTTTCCAATCATGCACTTAGCACATAATCTG CTCATGTTTCTGTTTTTTAGGTATGTTGGTGATATGGTAGTAACAGTATACCTGTTGTGCGAGCGAGCTTGATTTATGGC TGCTCCTCCATTTTGGGATTGCTGCATTACTTCCCTTCCTATTCCTTCTCCACCACTCTTAATTCAGCATGATATTGGGG CCTTGCTTGTTTCTTTTGGCCGGGGACATCATTAGGATGATGTGTGATCCGTTGAAATGAGAAGGTGGACACTGTCCCAT GGTTGGTGATTCATTAAAAGTGAGATGCCTTATAGTGTGTTTTGGATTAATCACACACATGCTGTTGCAGAGAATGTACT TTTATGGAAAGGAAATTGTTCCTTTCATGGTTGCACACCTCTTAAATGTGCAAATTCATTGCTGCTGAGAATGTACTTTT GTTCACTCCGCTTCTTCATTGAAGGCTATCTAAATGTGTAGCCATATCAGGTTTCTAGGTTATAGTAATGCCCATGGTAG TGAGCTTTACATTTTATAGTGTTCATGGTAGATCACTAGATCTATCCACCTATCTTACCTTGATCTGATTCTTTACGTTG TTCATAAACTTCTCAGACTTATTTTTTCTTATAATGTGGTTCAATGAGTTTTTTTAAGGTCGATCTTTCATAAATCTTTA AAAGCATACAAATAGTACAACCTCATTTTGGTATCTGAAAGTTTAATTGCTTGATCCATTTAGTTCTTGAAAATATAAAC ATAAAGGTCCCGTTTGGAAGAGATTATTTGAGCTTATTTTATAGTATAAATGCTTGTGTTAATGTTTGGAAGAGCCTATA CAAATAGCTTGTTGCAACACTAGGCCAACTAAAATCTTTTATTTCACTTGTTTGTAAAAGCACACTAACATTGATACTGA TTTGTTGCATCTATTTTGTTATTCATTTCTTGTTTATCTTTCATTGAAACCTGATCACTGATTCTAACTAAGCACTCTGC CTCTGTCTTTTTGTAGTCATGCAATTCGGTCTCTATAGTCTATAAAAAGCTGCTTCATCGAGCCCCAAAGGCGTTGAATA GGTACAGCCTACCTTGGTTGCACCTGCAGGTGACCTTGAATTGTATATAACTTCATTCAATGTTAATGTGCATGTGAGAG ATGTCTGCACAGCCTAAGGTTGTTGTCAAAGTTGAAAGTGAAGAATATATGCTGGCTTTGCAAGTAAGTTTTGTTCAGGG AAATTTTATGGTACATTAGCTAAGTTCTTGTGGAATGTGTGTAATATCTGTATTGGATACTTGCTTGCTATAGAGGATGA CTATTAGAGAAAAAGCTGGCATTCATAGAGCAATGTAAGGCAGGAAAGTTTTAAGTTGTTCTCAAAGAAATCTTGTGGCT AATTTTAATTGAACAGTGTGGAGAAGGCAAAGGAATGAGGTCATAGCTCTCTTGCATAGTAGTATTAATTTAGGTTATAA GTATTAATTTAGATTTAGGTGACTTTTTCCTTTTCTTTTTAATGGAAAATAGGAGGTTTTAAAAATCATTTAGTTATTAC ATTTTACTTAAAAAATAATTCAAAAGGTTGTTAAAAAAATTAATTCAAAAAAGGTTGTACTGTTTTGCTTTTCCCTAATG CTATCTTTCTTTGTATGATCATATATAATTTTTTTAAAGGTTGTTACATTTGTTTTTTCTTTTCTTTCAAACCAAGTAAA TTGACGTAAAGGTTCAGGCGTTCAGCACTTTATCTCATAAATGAGTGGTTGGGGGTTAAATTTCGACAATCTCTTGCCAC TTAGTGGGTTGAGACAGGGAATTAGTCTCACGCCTATCACTTGTCACCAACACGAGTTGAGAATAAGTTATGAAGCTTGA GGAAGGGAGAAACTTGTTGCACTGCTGTGTGGTACATATCACGTGATCCTTTCTATTTTTATTTTTCCCATTAATTAGGG TGGATGTGAAAAATGGGTGTTAACAGATTTATTTCACTCTTAACATAACTTCAGAAAAAAAAAATGAATGTAAGTTTAGA ATATTTAACGTGGACCAGCCCATAATAATACATAGGATCTTGCAGTGGCTGCTTTGAATGTCTTAGATTGAAGCGTGGAA GACGATAGCCCATTTTTTTATTCGTTTGGATCTCGACAAGTTGTGACAAGCCAAACAACTATAGTCCAAACAAGCATATC ATTTTATTTCATTATACGGCTAATTAATAGTTGTAGTACTTGTGGGGCATGATTAATTTGAACGACATGCACAAAGTCAG TAAATAGTAATGCAACGACATGCTAAGCACCATGATCATATGGTCAAACTTTTATAAATTAGAGTATTATTCATCAAATA AGTGTTACAACATTTTTTTTATAGAGGACAGCACTTTCTTTTCAATACCTTTTTCAACCCTCTCTACTCTCTAGTTGGTT GAAAAAATTACTAAAGTTAAGTTCACTATAAAAACAACAATGATGTATACACACCTCATATTTTAAACACTTCATTTCCA CCTATTTTTATTTCTATCTCTTTCATCTTATCATTTGTCACATCTCATATTTTATCTTTCTTACTTTTTTCTTTTCTTCC TATCTCTCTCATCATCCACCTCTCTCCACCTCATCTTAGAGGTGTGAACATAACATTATTCTATTCCTATAAAAATAAGA CACACATGAATTTCAACTAATTAATAATAGAGTGCCATGTTTATCATCTCATTATTAATTTTATTCTCATTTATTTATTT AATTACTTAAACATGCAATAATCAATGTGAGAGGATGAAACTTAACATCGATAATTGATTTTAATGTCATTTCTATAAAT ATTCATATTATCTCATTCTGCACTTTCAACATGCATTATATATAATTTGCATTGCGCAAGTATGTAATTGTGTCTCTCAC ACATAAGTGCGGTAAAATTGACCAGTAAAAAAGTAAAAAATGAAAAGTGTGACATTAAAACAACTTCGAAATCATTATTA CTCCTAGAGAAATGTCATGTAAGAGCATCTCCAATGGTAGTATCTAATGGGAAGGCTCTGAGGATAATAGGAAGATATGT TGGGTCAAATGGGAGAATGTTTGTAGACCAAAGAATGAAGGGGGGTTGGGGGTGAAGGATTGGAAATTATTCAATTTGGC TCTTATTGGGAAATGGAGGTGGAGGATGATTAGAGAAGAAGGTAACTTATGGTGTCGAATTTTACAGTTTAAATATAAGG GGACAGTTAAACTCTCTGACTCATGTTGGTGGAAAGATCTCAATGCGTCTTGTTTCGGCAACAATTCTGGTGGCTGGTTC GATGAGGCTCTTTGCAGAAGGGTTGGCGATGGTGGAAAGTTTCTATTCTGGGAGGAAGATTGGTTGAGGGCGGGAGTATT TAAAGAGCTATTTCCTAGACTCTATCTGTTGTCTTCTCAACCAAAGGCAACAATAAAGGAGATGGGGAGGTGGAGGGAAG GTGTTTGGCTTTGGGAGTTTAATTGGCTGAGACAATTACTTCAAAGGGAAACTGAAAGTGTTAATGAACTTTTGCAGCTG ATTTCGTGCTTTTCTCCTGCAACTGTGAGATGTGATGAGTGGTGTTGGACTAAGGATGGTTCTGGAATTTATTCTGCATG TTTTGCATATGAATTTTTGCAGGGTAGGGTCGAATCCTTAGCAGTGGACGAAAGGGTGTTTACCAAACTGTGGGCAACAA AAGCTCCTTCCAATGCGCTGGCTCTTTCATGGAAGATTTTGAATAACAGGATTCCAACCAAGGTGGAACTAGCAAGGCGT AACGCTTTACCAGGAGGATTGAATACAGCCTGTGTCTTGTGTGCTGACAGTGAGGAATCTATTGCTCATTTATTTCTGTC TTGCAATATATCTTGGAGGATTTGGATGCAAGTTTATAAGTGGTTGGGCATGTCAATGGTTCTCACTAATTCTGTAAGTC AACACTTTCTACATCATGTGATTCTGGGTATTAATGGTAGAGGAAGTAAGGCTGCCTCACTTATTTGGGTAGCCACTGTT GGTGTCATTTGGAATTTAAGAAATGGTGTGGTTTTTAGAGGGGTTTCAGTAGACACCGCAAGAATCCTAGACAGTATTCA ATTCAGAACCTGGTTGTGGCTCAAGGCGAACAATTCATCATTTGGGGTGTCAGTTTATGAGTGGATTGAAAACCCAAGAG TATGTTTGGAGATGCTATAATTGGTATTTTTTTCGGTCTGTTGTTTTCTGTGTTCAACTCTTCTTTCAGGTCATGTTTAT TGCAAGGAGAGATGTTATTGGAATTGTTAATTTACTCTTCGTGGGGGCAGCTAGCTTGGTGATCCCTGTCAGTACTTTGG CGTGGAACTTCTTTCATTCTTTGTGGAGCTATTTGATTTTATACTACCATTTGGAATTTTGCTGCATTGTGTCATGATTT CCTTAGCTGAGTGGCATTCGAAGATTATTCATACAGAGGGGCTTGCTTGATTGCTTTTGTATTTGGCAAGTTTATTTAGA GTGGGGGTTTTTGATTATCACTGGTTTATGGTAATTTGGGCTGGTTGTATGATCATATGACTTTGTATTTTTAGGCCCCT TGGAGATTAGTCTTTGATATTAGATCTTTGTACTCTTTTTCCTTGTCTAGGTTTTCCCAAGGGGGTTTTTTCTAGAAAGG TTTTAACGAGGCAAATTTCTTCTATCTCTCTCCTAGGGGTAGCGGGTTTAGTCTAGAAGTTGTTTGGGGGTTAATCTACT GTATCTCTACTGCTTATTGCTTCTGTAATTTTTTTTCTTTCTACTTGTATTGGGTTGAAGTACCCCTTGTACTTCTATTC AATATATTTTTCATGGC
CDS sequence (LotjaGi2g1v0364000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCGCGGGGGTGTGTTGCCAGATAAGCTTACTTATTTTATATTGATGAATGCTTATTGTCTTGAAGGTAAATTCTG TAAGGCTTTTCATATGCATCATGAGATGACACACAAGGGTTTTTTGCCTGATTTTGTTTCTGGGTTTTCACCCTCTCTTG TTACATACAATGCGCTTATTCATGGACTTTGCCTTTTGGGGAGGGTTGAGGAGGCTTTGGGGATTTTGAGGGGCATGGCT GCGATGGGTTTGCCCCCTGATGCTGTATGTTATACCACTGTTATATCCGGGTTATGCAAAATCGGGGAGCCGAGGAAGGC GTATGAATTGAAGTTGGAGATGGACGGAAAGAACTTCTGGTGGCTGGATCTAGACACATATGACTCGCTTATGGAAGACC TGTCGGATGAGGATATTTATTCTAATATGATGAATGATTATTTTGCTCAAGGTAACATGAAAAAGGTTTATAGATTGGAT TATGATATGAAACACGATGGTTATTTAACTAGTGACGTTATCTTTCGTGTGTATCTGAATGCACTTAATAAGAAAGCCAG GACAATAGATGCTAAGAGGACCCTTCTGGATATGATTTATAAAAACTTGTGGACTAAGCCATCTTATTTTACATATGATA CTCTGATAGAGAACTGCAGTAATAATGAATTTAAGAGTTTGGTAGGGCTTGTCAAAGATTTCAGCATGAGGGGTTTAGTG GGTGATGCCGGCAGAGCTCGTGACACAATGCTTCACGGGAATTATAAGCCAGAGGGATCAGTTTATAATTTATTAATATT TGATCATTGTAGATCTCATAGTGTTAATAAGGCATATGATATGTACAAGGAGATGGTGCATTATGGCTTTGCTCCTCATA TGTTCTCTATACTTGCTGTTATTAAGGCTCTACATTATGATAGAAGGTACAATGAGATGATGTGGGTAATTAAAAACACA TTGAAGAGCTGCAATCTCAATGATTCTGAGCTACGTAAAGTACTTAACAAAATTAATGTCAGGGAATGTGATATTGATGC TCTTTTGGATGTGCTAGCTGAAATAGCCATGGGTGGTCTGTTACTTGATGGTGGAAAGTGTTCATATGCTTCAGCAAGTA CCTAA
Protein sequence (LotjaGi2g1v0364000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRGGVLPDKLTYFILMNAYCLEGKFCKAFHMHHEMTHKGFLPDFVSGFSPSLVTYNALIHGLCLLGRVEEALGILRGMA AMGLPPDAVCYTTVISGLCKIGEPRKAYELKLEMDGKNFWWLDLDTYDSLMEDLSDEDIYSNMMNDYFAQGNMKKVYRLD YDMKHDGYLTSDVIFRVYLNALNKKARTIDAKRTLLDMIYKNLWTKPSYFTYDTLIENCSNNEFKSLVGLVKDFSMRGLV GDAGRARDTMLHGNYKPEGSVYNLLIFDHCRSHSVNKAYDMYKEMVHYGFAPHMFSILAVIKALHYDRRYNEMMWVIKNT LKSCNLNDSELRKVLNKINVRECDIDALLDVLAEIAMGGLLLDGGKCSYASAST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 46 | 46 | 1.1E-6 | ||
| Phobius | 1 | 284 | 284 | - | – | |
| PANTHER | 5 | 46 | 42 | 9.5E-38 | – | |
| PANTHER | 5 | 46 | 42 | 9.5E-38 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 11.071 | ||
| TIGRFAM | 15 | 44 | 30 | 6.6E-5 | ||
| Pfam | 15 | 41 | 27 | 0.054 | ||
| Gene3D | 47 | 136 | 90 | 1.0E-20 | ||
| PANTHER | 49 | 118 | 70 | 9.5E-38 | – | |
| PANTHER | 49 | 118 | 70 | 9.5E-38 | – | |
| Pfam | 51 | 100 | 50 | 9.1E-14 | ||
| ProSiteProfiles | 52 | 86 | 35 | 12.551 | ||
| TIGRFAM | 54 | 88 | 35 | 5.3E-9 | ||
| ProSiteProfiles | 87 | 121 | 35 | 9.175 | ||
| TIGRFAM | 89 | 117 | 29 | 2.2E-5 | ||
| ProSiteProfiles | 136 | 170 | 35 | 7.552 | ||
| Gene3D | 137 | 224 | 88 | 1.0E-6 | ||
| PANTHER | 139 | 304 | 166 | 9.5E-38 | – | |
| PANTHER | 139 | 304 | 166 | 9.5E-38 | – | |
| Gene3D | 225 | 344 | 120 | 4.5E-8 | ||
| ProSiteProfiles | 258 | 292 | 35 | 9.745 | ||
| Pfam | 261 | 290 | 30 | 0.0052 | ||
| TIGRFAM | 261 | 292 | 32 | 8.5E-4 | ||
| Phobius | 285 | 304 | 20 | - | – | |
| Phobius | 305 | 374 | 70 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0364000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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