Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0369800 |
Transcript ID | LotjaGi2g1v0369800.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT1G50140.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|I1LIT3|I1LIT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0369800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86699372..86702977) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAAGGGTTTATGATGGATTAGAAATATGGTACAAGTTTCACTGTAGCATCATGTTTGTCTTGGTGTTGTTAAATTTT GTTTTCAGAAGCTGAAAAAGTAGTGGACTGGGCAAAAAATCATTACTTGTCCTCATGCCTGCTTCCTTGTGTTAAAGAAA ATAGATTGTGTCTTCCTCAGGAAAGGTATAAATGTATACCTTATATCATTCTATTGTATTGGGTAGAAAGAATTTTAAAA GTCATTTGTTTGTTCTTTCCCTTTTGTTCAGTCTTGAAATCGCAATCTCAAGGTTGAAGGGCGTGGAAACAATGTCAAGG AAACCTTCTGAGAGCCTCAAGGCATGTTGTTTATTTTTCTGTTTTTATAAATAAATGATCTTAACTTGGGAGGCGTTTTT GTCTTATGTTGATTTCAATCATTATAAATATGGTAACAGTACCTTCCAGAGAATAAGCATGAGAGTAAAATCATTTCAGC TGTAGTACCTCCGGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAACATGTGAAGAAGGCACTTGATGAAC TTATTATTCTTCCAATGAGAAGGCCTGAACTTTTCACTCATGGAAACCTGTTGCGGGTAATGCTTCTTTTTCTTATATAT ATTCATTCTCAAATCAATTTTGTTCTCCTTTTATTGTGTGTCATAAATTGAGGAAACTCGTGTCAGCCCTGCAAAGGATT ATTACTGTTTGGTCCTCCTGGAACTGGGAAAACCCTTACGGCCAAGGCACTTGCTAGTGAAGCTGGTGCAAATTTTATCA ACGTAACTAATTCGACCCTTACATCAAAGGTAATTTTGATTCTGCCACATTTTCCTCTTTGCAACTAAAACTTGGAAATT TTGGTGGTTGGTTTCTCTGATAACATGCTACTCTAATTTTACCCAGTACTGAAGGGCGTGTATGATGTCTATGTTGGAGT GTATGTTACAAGTTGTTAAGGGTCTGCTAGTTACAAGTTCATTAGAAGAGTATATAAAAGGTGAAATAAGGACTGAGTCA ATAGTTATATTAAATATACTGGTTAGTAAAGAATAATTTTGAACAGAATTATAACAAGTTGATATTGTTAATATAGTAAT TAGAAAATAATTATTCTGTAATTGAATTAGGTTATTAGGATTAGGACAGAATAGAACAGAGGAAATAGTATGTTATAGTT CACTGTTTGAGGGTCTATAATCCACTGCTTTTTCTATTATCAAATTCATTTGAATTTTTTCCCATTAAATTTGTTATATA AATTGTTCCAGTATTTTAAATGTGTATGAGTTTCTTCTCTTGTTTATGATATACCTTATGCTGTTTATTTCTTTGCTGAT ACAGTGGTATGGAGAAGAGGAAAAATTAACCAAAGCACTTTTCTCATTAGCCAGCAAGCTTGCTCCTGTCATTATATTTG TTGATGAAGTGAGTGTCTGAATGCTTAACTTGTCTCATCTTTAGTTTTGCTTTTCAAAATATGCTTCTTCCATCTTTTTA TTTATATTATTTTTGTTAAATTGATACACTGGAGTTTAGATACTTGCTGAAAACTAAGTACTTAGTCCTTCTAGAATTCT CTATGTAAGGTTAGTAACTGTTTTCTGTTGAGCTGTTATAGCTAACACAACAGACCTGTGCCAAAAAGGATGAGCAGTAA AAAGCCATCTTTTGAAATTTATTTTTTAACCAACTTCAGTTTCCCCTTTCCAGGAATGCTCCATACTGGCAATCTTTCTT ACTTAGATAACTAGTATTTCAGTCTAGGCTTTATTATCTTATCTATCTCAATCACGACTTATAAAATTGGTTGCTGACTA AAATATGCATTGTAGATTGACAGTTTGCTTGGTGCTCGAGGTCGTGCTTCTGAGCATGAGGCCACTAGAAAATTGAGGAA CGAGTTCATGGCTGAGTGGGATGGACTAAGGTCAAAAGAAAACCAAAGAATACTCATCATTGGTGCAACAAACCGGCCAT TTGACCTTGATGATGCTGTTATTCGCCGCTTACCAAGAAGGTAGTAAGATTCGTCTTACTTACAATTATTGGCTGAAGAG TTATAGCCATTATCTTCTGTTCAATTATCACATTTTTTATCTTTTGGTGGCATTGTGTTTGTCCAGGATATATGTGGATT TACCAGACGCAGAAAATCGAATGAAGATTTTAAGAATAATTCTTAAACATGAAAATTTGGATCCTGATTTTCAGTTTGAC AAACTTGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGGTGGATATTGTTTTTTAAGTCCTACTAAATTGAAG AGGGCGCTATACTTGGTTCAGTATAGTGGTGCCTAACACTATTCTCATGCTTTTCGTTAGCTGCAATATCTTATGATGTG TCTAATAATATGGTGATTTGCGATTACATTTGGCAGAACCTCTGTGTTGCTGCAGCATATAGACCTGTTCAAGAGCTCTT AGAGGAAGAAAAGATGGTACGTTCATTATAAAATTAATTGCTCTTTCATGAGTCATGGATGTGCAGTAAATATGTGAAAC TTGCTCGGCTTTCTTGTACTGATTGCTGTGTTCTCGATTCATGCACTTTTTTTAAATTCTTTTAGAATTTCCGCAACCAC AAAAATGCATTTTCATGGCGAACCTTAGTAACTTACATTATCCCTTATCCGTGGAAAATATGATAGATACAACAGAATGA AAATCTCTCATAAACTTTATGTTCTTGTCATTGCAATTTTGTTCTTCAGGTCTGGATGCTTTAAAAAGTAAGTTAATTAT AGATGCTGTAACTTTATAGCTGTAAATCTCTCAGAAAACATCCATAATTAACTTCAACATCACTCACTGCCAATTGTTTA AGATTACTTTGCCTGCTCACATGTTATTTCTACCTTTTGGCTTGCACAGGGAGGCAATAAAGGTACAACTTCTGCATTAA GGCCTCTTACTTTGGATGATTTAATTCAATCGAAATCCAAGGTATAAATAATGTGTGTGTATACTATATGGGTTAAAATT AAACATGGTTTTCGTCCTTATAAAATTGATACATTTTAAAATGTGTAGGTGCGTCCATCAGTTGCCGGTGATTCAGTAAG CGCGAAGGAGTTGAGCAAGTGGAACGAAATGTATGGTGAGGGTGGTACGTACTAGGACAAAATCATCACCATAAGTGGTT TTTAAGTTATTTGGATTCAGAGAAAAAGAAGAGAATGAAAGGAAAAGTGTTAGTAATGAAAATGAGTGTGATTTCGTTGC GAAGAGTTCACTGCAGACTTTTCAAGCGTGATCCATTGAGCTGATATAAAAGTAATTCAGTTTAATGTATTTTAACGAGA TGTATTATCCCCTGTCTTAATGCCGGGAATATCCATTCATATGTTTAATAACAGGGGTAATTCGGTAATTCCCCAATTAA TTTTTGTCAGCAATGTTTTACTGATTTCCTTTTTTATCTGATCTCTTTCTCTCAATTGACCTTATATTTTTCATGTACCA AAAAAAATTGACCTTATATTTTTCAAGGACTACCTGAACTAATTTTAGAGCTGTCTTTCATGACCAAGTTTTGAGGTCGG TGATCA
CDS sequence (LotjaGi2g1v0369800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGGCCTGAACTTTTCACTCATGGAAACCTGTTGCGGCCCTGCAAAGGATTATTACTGTTTGGTCCTCCTGGAAC TGGGAAAACCCTTACGGCCAAGGCACTTGCTAGTGAAGCTGGTGCAAATTTTATCAACGTAACTAATTCGACCCTTACAT CAAAGTGGTATGGAGAAGAGGAAAAATTAACCAAAGCACTTTTCTCATTAGCCAGCAAGCTTGCTCCTGTCATTATATTT GTTGATGAAATTGACAGTTTGCTTGGTGCTCGAGGTCGTGCTTCTGAGCATGAGGCCACTAGAAAATTGAGGAACGAGTT CATGGCTGAGTGGGATGGACTAAGGTCAAAAGAAAACCAAAGAATACTCATCATTGGTGCAACAAACCGGCCATTTGACC TTGATGATGCTGTTATTCGCCGCTTACCAAGAAGGATATATGTGGATTTACCAGACGCAGAAAATCGAATGAAGATTTTA AGAATAATTCTTAAACATGAAAATTTGGATCCTGATTTTCAGTTTGACAAACTTGCTAACTTGACTGATGGATACTCTGG CAGTGATTTGAAGAACCTCTGTGTTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAGGAAGAAAAGATGGGAGGCA ATAAAGGTACAACTTCTGCATTAAGGCCTCTTACTTTGGATGATTTAATTCAATCGAAATCCAAGGTGCGTCCATCAGTT GCCGGTGATTCAGTAAGCGCGAAGGAGTTGAGCAAGTGGAACGAAATGTATGGTGAGGGTGGTACGTACTAG
Protein sequence (LotjaGi2g1v0369800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRPELFTHGNLLRPCKGLLLFGPPGTGKTLTAKALASEAGANFINVTNSTLTSKWYGEEEKLTKALFSLASKLAPVIIF VDEIDSLLGARGRASEHEATRKLRNEFMAEWDGLRSKENQRILIIGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKIL RIILKHENLDPDFQFDKLANLTDGYSGSDLKNLCVAAAYRPVQELLEEEKMGGNKGTTSALRPLTLDDLIQSKSKVRPSV AGDSVSAKELSKWNEMYGEGGTY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 254 | 254 | 2.9E-86 | – | |
PANTHER | 1 | 261 | 261 | 1.6E-154 | – | |
PANTHER | 1 | 261 | 261 | 1.6E-154 | – | |
SUPERFAMILY | 7 | 242 | 236 | 6.51E-53 | ||
SMART | 15 | 152 | 138 | 2.3E-16 | ||
CDD | 17 | 150 | 134 | 5.1105E-23 | – | |
Pfam | 19 | 149 | 131 | 2.6E-37 | ||
ProSitePatterns | 122 | 141 | 20 | - | ||
Gene3D | 151 | 236 | 86 | 2.9E-86 | – | |
Pfam | 172 | 208 | 37 | 5.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0369800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…