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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0369800 |
| Transcript ID | LotjaGi2g1v0369800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH 1; TAIR: AT1G50140.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q5ZK92|SPAST_CHICK Spastin; TrEMBL-Plants: tr|I1LIT3|I1LIT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0369800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86699375..86703028) extracted from Lotus japonicus Gifu genome v1.2.
TAAGGGTTTATGATGGATTAGAAATATGGTACAAGTTTCACTGTAGCATCATGTTTGTCTTGGTGTTGTTAAATTTTGTT TTCAGAAGCTGAAAAAGTAGTGGACTGGGCAAAAAATCATTACTTGTCCTCATGCCTGCTTCCTTGTGTTAAAGAAAATA GATTGTGTCTTCCTCAGGAAAGGTATAAATGTATACCTTATATCATTCTATTGTATTGGGTAGAAAGAATTTTAAAAGTC ATTTGTTTGTTCTTTCCCTTTTGTTCAGTCTTGAAATCGCAATCTCAAGGTTGAAGGGCGTGGAAACAATGTCAAGGAAA CCTTCTGAGAGCCTCAAGGCATGTTGTTTATTTTTCTGTTTTTATAAATAAATGATCTTAACTTGGGAGGCGTTTTTGTC TTATGTTGATTTCAATCATTATAAATATGGTAACAGTACCTTCCAGAGAATAAGCATGAGAGTAAAATCATTTCAGCTGT AGTACCTCCGGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAACATGTGAAGAAGGCACTTGATGAACTTA TTATTCTTCCAATGAGAAGGCCTGAACTTTTCACTCATGGAAACCTGTTGCGGGTAATGCTTCTTTTTCTTATATATATT CATTCTCAAATCAATTTTGTTCTCCTTTTATTGTGTGTCATAAATTGAGGAAACTCGTGTCAGCCCTGCAAAGGATTATT ACTGTTTGGTCCTCCTGGAACTGGGAAAACCCTTACGGCCAAGGCACTTGCTAGTGAAGCTGGTGCAAATTTTATCAACG TAACTAATTCGACCCTTACATCAAAGGTAATTTTGATTCTGCCACATTTTCCTCTTTGCAACTAAAACTTGGAAATTTTG GTGGTTGGTTTCTCTGATAACATGCTACTCTAATTTTACCCAGTACTGAAGGGCGTGTATGATGTCTATGTTGGAGTGTA TGTTACAAGTTGTTAAGGGTCTGCTAGTTACAAGTTCATTAGAAGAGTATATAAAAGGTGAAATAAGGACTGAGTCAATA GTTATATTAAATATACTGGTTAGTAAAGAATAATTTTGAACAGAATTATAACAAGTTGATATTGTTAATATAGTAATTAG AAAATAATTATTCTGTAATTGAATTAGGTTATTAGGATTAGGACAGAATAGAACAGAGGAAATAGTATGTTATAGTTCAC TGTTTGAGGGTCTATAATCCACTGCTTTTTCTATTATCAAATTCATTTGAATTTTTTCCCATTAAATTTGTTATATAAAT TGTTCCAGTATTTTAAATGTGTATGAGTTTCTTCTCTTGTTTATGATATACCTTATGCTGTTTATTTCTTTGCTGATACA GTGGTATGGAGAAGAGGAAAAATTAACCAAAGCACTTTTCTCATTAGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTG ATGAAGTGAGTGTCTGAATGCTTAACTTGTCTCATCTTTAGTTTTGCTTTTCAAAATATGCTTCTTCCATCTTTTTATTT ATATTATTTTTGTTAAATTGATACACTGGAGTTTAGATACTTGCTGAAAACTAAGTACTTAGTCCTTCTAGAATTCTCTA TGTAAGGTTAGTAACTGTTTTCTGTTGAGCTGTTATAGCTAACACAACAGACCTGTGCCAAAAAGGATGAGCAGTAAAAA GCCATCTTTTGAAATTTATTTTTTAACCAACTTCAGTTTCCCCTTTCCAGGAATGCTCCATACTGGCAATCTTTCTTACT TAGATAACTAGTATTTCAGTCTAGGCTTTATTATCTTATCTATCTCAATCACGACTTATAAAATTGGTTGCTGACTAAAA TATGCATTGTAGATTGACAGTTTGCTTGGTGCTCGAGGTCGTGCTTCTGAGCATGAGGCCACTAGAAAATTGAGGAACGA GTTCATGGCTGAGTGGGATGGACTAAGGTCAAAAGAAAACCAAAGAATACTCATCATTGGTGCAACAAACCGGCCATTTG ACCTTGATGATGCTGTTATTCGCCGCTTACCAAGAAGGTAGTAAGATTCGTCTTACTTACAATTATTGGCTGAAGAGTTA TAGCCATTATCTTCTGTTCAATTATCACATTTTTTATCTTTTGGTGGCATTGTGTTTGTCCAGGATATATGTGGATTTAC CAGACGCAGAAAATCGAATGAAGATTTTAAGAATAATTCTTAAACATGAAAATTTGGATCCTGATTTTCAGTTTGACAAA CTTGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGGTGGATATTGTTTTTTAAGTCCTACTAAATTGAAGAGG GCGCTATACTTGGTTCAGTATAGTGGTGCCTAACACTATTCTCATGCTTTTCGTTAGCTGCAATATCTTATGATGTGTCT AATAATATGGTGATTTGCGATTACATTTGGCAGAACCTCTGTGTTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGA GGAAGAAAAGATGGTACGTTCATTATAAAATTAATTGCTCTTTCATGAGTCATGGATGTGCAGTAAATATGTGAAACTTG CTCGGCTTTCTTGTACTGATTGCTGTGTTCTCGATTCATGCACTTTTTTTAAATTCTTTTAGAATTTCCGCAACCACAAA AATGCATTTTCATGGCGAACCTTAGTAACTTACATTATCCCTTATCCGTGGAAAATATGATAGATACAACAGAATGAAAA TCTCTCATAAACTTTATGTTCTTGTCATTGCAATTTTGTTCTTCAGGTCTGGATGCTTTAAAAAGTAAGTTAATTATAGA TGCTGTAACTTTATAGCTGTAAATCTCTCAGAAAACATCCATAATTAACTTCAACATCACTCACTGCCAATTGTTTAAGA TTACTTTGCCTGCTCACATGTTATTTCTACCTTTTGGCTTGCACAGGGAGGCAATAAAGGTACAACTTCTGCATTAAGGC CTCTTACTTTGGATGATTTAATTCAATCGAAATCCAAGGTATAAATAATGTGTGTGTATACTATATGGGTTAAAATTAAA CATGGTTTTCGTCCTTATAAAATTGATACATTTTAAAATGTGTAGGTGCGTCCATCAGTTGCCGGTGATTCAGTAAGCGC GAAGGAGTTGAGCAAGTGGAACGAAATGTATGGTGAGGGTGGTACGTACTAGGACAAAATCATCACCATAAGTGGTTTTT AAGTTATTTGGATTCAGAGAAAAAGAAGAGAATGAAAGGAAAAGTGTTAGTAATGAAAATGAGTGTGATTTCGTTGCGAA GAGTTCACTGCAGACTTTTCAAGCGTGATCCATTGAGCTGATATAAAAGTAATTCAGTTTAATGTATTTTAACGAGATGT ATTATCCCCTGTCTTAATGCCGGGAATATCCATTCATATGTTTAATAACAGGGGTAATTCGGTAATTCCCCAATTAATTT TTGTCAGCAATGTTTTACTGATTTCCTTTTTTATCTGATCTCTTTCTCTCAATTGACCTTATATTTTTCATGTACCAAAA AAAATTGACCTTATATTTTTCAAGGACTACCTGAACTAATTTTAGAGCTGTCTTTCATGACCAAGTTTTGAGGTCGGTGA TCATGTACCTACAATAAATCCTATCTTGTTTTTTATCACTTGCGAATGAAATAC
CDS sequence (LotjaGi2g1v0369800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGGCCTGAACTTTTCACTCATGGAAACCTGTTGCGGCCCTGCAAAGGATTATTACTGTTTGGTCCTCCTGGAAC TGGGAAAACCCTTACGGCCAAGGCACTTGCTAGTGAAGCTGGTGCAAATTTTATCAACGTAACTAATTCGACCCTTACAT CAAAGTGGTATGGAGAAGAGGAAAAATTAACCAAAGCACTTTTCTCATTAGCCAGCAAGCTTGCTCCTGTCATTATATTT GTTGATGAAATTGACAGTTTGCTTGGTGCTCGAGGTCGTGCTTCTGAGCATGAGGCCACTAGAAAATTGAGGAACGAGTT CATGGCTGAGTGGGATGGACTAAGGTCAAAAGAAAACCAAAGAATACTCATCATTGGTGCAACAAACCGGCCATTTGACC TTGATGATGCTGTTATTCGCCGCTTACCAAGAAGGATATATGTGGATTTACCAGACGCAGAAAATCGAATGAAGATTTTA AGAATAATTCTTAAACATGAAAATTTGGATCCTGATTTTCAGTTTGACAAACTTGCTAACTTGACTGATGGATACTCTGG CAGTGATTTGAAGAACCTCTGTGTTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAGGAAGAAAAGATGGGAGGCA ATAAAGGTACAACTTCTGCATTAAGGCCTCTTACTTTGGATGATTTAATTCAATCGAAATCCAAGGTGCGTCCATCAGTT GCCGGTGATTCAGTAAGCGCGAAGGAGTTGAGCAAGTGGAACGAAATGTATGGTGAGGGTGGTACGTACTAG
Protein sequence (LotjaGi2g1v0369800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRPELFTHGNLLRPCKGLLLFGPPGTGKTLTAKALASEAGANFINVTNSTLTSKWYGEEEKLTKALFSLASKLAPVIIF VDEIDSLLGARGRASEHEATRKLRNEFMAEWDGLRSKENQRILIIGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKIL RIILKHENLDPDFQFDKLANLTDGYSGSDLKNLCVAAAYRPVQELLEEEKMGGNKGTTSALRPLTLDDLIQSKSKVRPSV AGDSVSAKELSKWNEMYGEGGTY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 254 | 254 | 2.9E-86 | – | |
| PANTHER | 1 | 261 | 261 | 1.6E-154 | – | |
| PANTHER | 1 | 261 | 261 | 1.6E-154 | – | |
| SUPERFAMILY | 7 | 242 | 236 | 6.51E-53 | ||
| SMART | 15 | 152 | 138 | 2.3E-16 | ||
| CDD | 17 | 150 | 134 | 5.1105E-23 | – | |
| Pfam | 19 | 149 | 131 | 2.6E-37 | ||
| ProSitePatterns | 122 | 141 | 20 | - | ||
| Gene3D | 151 | 236 | 86 | 2.9E-86 | – | |
| Pfam | 172 | 208 | 37 | 5.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0369800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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