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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0370400 |
| Transcript ID | LotjaGi2g1v0370400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|M5WKF6|M5WKF6_PRUPE Histone H2B; Found in the gene: LotjaGi2g1v0370400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86746332..86746783) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTCCCAATTCGTGATGGCACCCAAGGCAGACAAGAAGCCCGCGGAGGAGAAGAAGTCGACGGTGGCCGAGAAGGCT CCCCCGGCGGAGAAGAAACCCAAGGCCGGGAAGAAGCTTCCCAAGGAGGGCGCAGCCGCTGCCGGAGACAAGAAGAAGAA GAGAAGCAAGAAGAGCGTAGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTTCACCCAGACATCGGTATCT CCAGCAAGGCCATGGGGATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAATCCTCCAGGCTTGCC CGCTACAACAAGAAGCCCACCATCACTTCCAGGGAAATCCAGACCGCGGTCAGGCTTGTTCTGCCCGGAGAATTGGCCAA GCATGCCGTGTCAGAGGGTACCAAGGCTGTGACCAAGTTCACAAGCTCTTGA
CDS sequence (LotjaGi2g1v0370400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCCAAGGCAGACAAGAAGCCCGCGGAGGAGAAGAAGTCGACGGTGGCCGAGAAGGCTCCCCCGGCGGAGAAGAA ACCCAAGGCCGGGAAGAAGCTTCCCAAGGAGGGCGCAGCCGCTGCCGGAGACAAGAAGAAGAAGAGAAGCAAGAAGAGCG TAGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTTCACCCAGACATCGGTATCTCCAGCAAGGCCATGGGG ATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAATCCTCCAGGCTTGCCCGCTACAACAAGAAGCC CACCATCACTTCCAGGGAAATCCAGACCGCGGTCAGGCTTGTTCTGCCCGGAGAATTGGCCAAGCATGCCGTGTCAGAGG GTACCAAGGCTGTGACCAAGTTCACAAGCTCTTGA
Protein sequence (LotjaGi2g1v0370400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKADKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGAAAAGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMG IMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 53 | 53 | - | – | |
| PANTHER | 1 | 144 | 144 | 9.8E-85 | – | |
| PANTHER | 1 | 144 | 144 | 9.8E-85 | ||
| Pfam | 4 | 120 | 117 | 1.5E-23 | ||
| Gene3D | 18 | 144 | 127 | 6.3E-59 | ||
| SUPERFAMILY | 28 | 144 | 117 | 6.93E-53 | ||
| SMART | 47 | 143 | 97 | 3.0E-73 | ||
| PRINTS | 57 | 75 | 19 | 3.1E-49 | ||
| PRINTS | 76 | 96 | 21 | 3.1E-49 | ||
| PRINTS | 98 | 115 | 18 | 3.1E-49 | ||
| ProSitePatterns | 112 | 134 | 23 | - | ||
| PRINTS | 115 | 128 | 14 | 3.1E-49 | ||
| PRINTS | 128 | 141 | 14 | 3.1E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi2g1v0370400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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