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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0370600 |
| Transcript ID | LotjaGi2g1v0370600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O22582|H2B_GOSHI Histone H2B; TrEMBL-Plants: tr|M1BEW2|M1BEW2_SOLTU Histone H2B; Found in the gene: LotjaGi2g1v0370600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86754712..86755161) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCACCCAAGGCAGACAAGAAGCCCGCGGAGAAGAAGCCCGCCGAGGAGAAGAAGTCGACGGTGGCTGAGAAGGCTCC CCCGGCGGAGAAGAAGCCCAAGGCCGGGAAGAAGCTTCCCAAGGAGGGCGCAGCCGCTGCCGGAGACAAGAAGAAGAAGA GAAGCAAGAAGAGCGTAGAGACCTACAAGATCTACATCTTCAAGGTCCTGAAGCAGGTTCACCCAGACATCGGTATCTCC AGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAATCTTCCAGGCTCGCTCG CTACAACAAGAAACCCACCATCACTTCCAGGGAAATCCAGACCGCGGTCAGGCTTGTGCTGCCCGGAGAGTTGGCTAAGC ACGCTGTGTCTGAGGGGACCAAGGCGGTGACGAAGTTCACAAGTTCTTGA
CDS sequence (LotjaGi2g1v0370600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCCAAGGCAGACAAGAAGCCCGCGGAGAAGAAGCCCAAGCCCAAGGCCGGGAAGAAGCTTCCCAAGGAGGGCGC AGCCGCTGCCGGAGACAAGAAGAAGAAGAGAAGCAAGAAGAGCGTAGAGACCTACAAGATCTACATCTTCAAGGTCCTGA AGCAGGTTCACCCAGACATCGGTATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAG CTCGCTCAGGAATCTTCCAGGCTCGCTCGCTACAACAAGAAACCCACCATCACTTCCAGGGAAATCCAGACCGCGGTCAG GCTTGTGCTGCCCGGAGAGTTGGCTAAGCACGCTGTGTCTGAGGGGACCAAGGCGGTGACGAAGTTCACAAGTTCTTGA
Protein sequence (LotjaGi2g1v0370600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKADKKPAEKKPKPKAGKKLPKEGAAAAGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEK LAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 132 | 132 | 1.0E-79 | – | |
| MobiDBLite | 1 | 40 | 40 | - | – | |
| PANTHER | 1 | 132 | 132 | 1.0E-79 | ||
| Gene3D | 3 | 132 | 130 | 3.7E-61 | ||
| Pfam | 10 | 108 | 99 | 1.6E-22 | ||
| SUPERFAMILY | 16 | 132 | 117 | 4.84E-53 | ||
| SMART | 35 | 131 | 97 | 3.0E-73 | ||
| PRINTS | 45 | 63 | 19 | 2.4E-49 | ||
| PRINTS | 64 | 84 | 21 | 2.4E-49 | ||
| PRINTS | 86 | 103 | 18 | 2.4E-49 | ||
| ProSitePatterns | 100 | 122 | 23 | - | ||
| PRINTS | 103 | 116 | 14 | 2.4E-49 | ||
| PRINTS | 116 | 129 | 14 | 2.4E-49 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi2g1v0370600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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