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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0371800 |
| Transcript ID | LotjaGi2g1v0371800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Membrane protein insertase YidC; TAIR: AT2G28800.1 63 kDa inner membrane family protein; Swiss-Prot: sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic; TrEMBL-Plants: tr|A0A0B2QQI6|A0A0B2QQI6_GLYSO Inner membrane protein PPF-1, chloroplastic; Found in the gene: LotjaGi2g1v0371800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:86859810..86867033) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAACCCCTAATCTGAAGACGTGTAAGTTACTGGGTGGTTGAAAATCAAACGGAAAATCCAGCACTTGCCATCGTGCA CACTGTCCTCGCCTCGCGAAAAAATAAGGATAATTCGGAAAATATACCCTCATCTCTAATCCAATCTCTCATGATGATGA GAAGCTGAACCATCTCCACTTCCATCATCATCACCTTGAAGTAGTAGCCATGGCCAACACACTCATTTCTTCTCCATCTT TCACCGGCACTCCGCTCCCTTCACTCCCTCGCCGCCACTTCCCCCACCGCGCGGCCAGGCTACTCACCACCAAGGCCTTC CACCAAATCCCCCCAATTCACTCCATTAGCCATTCCCTTGACTTCGCCGGAATCGTCGCCAGGACCGAAGGTCTTCTTTA CACGCTCGCCGACGCCGCCGTCGTCGCCGTTGATCCTGCCACGACTTCCGTCGATGCTGCTACACAGAAGAACGGAGGCT GGTTCGGCTTCATTTCCGAAGCCATGGAGTACGTGCTCAAGGTAATCAATCTTCTTCTCAACTCCACCTCGTTAGCTTTC TGTATAGCTTGAAATGCTTTTGTTGAGGTTGTGTAGCTTGCTTAGGTCTGAAGACACCTTCTGCTGTTGAATTTTAGCTC AGAACCGTTGATTTTGAACTAAGTTTACATGAGAATGATGTTAAGATTGTTGAATTCTAGAGATGGTATTTTGTATGGGA AGGGAAAGTGTTCAGTGTTTACTTTGAATTTCAACAGTGAATTTGACTAATAAGTTCAGATTTGGTGCTTTCAATTATGT GGAAATCAAGCTATATTTGGAAATGCTAACATTGGTGGCTCGGTGCTCTCTTACGAGGGATTTTGTAGTTTTTACGAAAC TTCTCACGAATAGTACAACTCACTTGGCAGTTGGTCCTTTGTTTCACAAATCACAGTTAACATGTGAAATGGTGAGAAAG AAGAAGGAAACGAATTAATTGACTTAATGGAAACACACCTCATCTTTGTTTACTTGAGAATGATGTTAGGATTTTTGAAT TCCAGAGATAGTATTTTGTATGGGAAGGGAAAGTGTTCAGTGTTTACTTTGAATTTCGACGGTGAATTCGACTAATGAGT TCAGATTTAGTGCTTTCTATTATGTGGAAATCAAGCTATATTTGGAAATGTTCATATCGGTGCTTTCTCTTACAAGGGGT TTTATACTACAATGCACTTGGCAGTTGGCCTATTGTTTCATAGTTGATATGTGAAATAGTGAGAAAGAAGAAGGAAACGA ATTAATTGACAAAATGGAAACACACATCATCTTTCGTTGATCATTTTTTGGAGGATTTAGTATTTTCTAATGGAAATGTT TGCTTATTGTTATTCAGGTACTTGTATTTTAGATGCTGTGTCACAGTCATTATTCTGTTTTCAGGTGTTGAAGGATGGTC TGTCTGCTGTGCATGTGCCTTACTCGTATGGATTCGCAATCATATTGCTCACTGTTATAGTTAAGGCCGCCACGCTTCCA TTGACAAAGCAACAGGTGGGTGCAAATCCCAGCAATTTCTAGAGACAACCATAGAATATAGCATTTGCAAATTTACTGAA ACCTTTATTAAATCTTTGTTTGAAACAAACTTGTTCCTTCATGCTGAAGAAATTGGAAGATTTTCTTCTTCAAAACCTGA CATACTCCTTCAAAATATTATGAAAAACCATAAATGAATTTGAACTTTCAATCATATGAAATTTAACATATAAGCTTCGC TTGACTAAATGAAGTGCTGATTTTATTAATTCATGTAGGTGGAATCAACACTGGCTATGCAAAATCTTCAACCTAAAATT AAGGCCATTCAAGAAAGATATGCCGGCAATCAGGTGAGGGATGTTTTTAATTATTCAGCATCTAAATTGATGTCAAGTAA ATATTGATTTTGTCAACCTTAAATTATTGCATGGTTGTTTCTAATTATTCATTTTGTTGCCATCTTTTCAAGGAAAGAAT ACAACTTGAGACCTCAAGGCTATATACGCAGGCTGGGGTTAACCCGTTGGCAGGTTATTTTTTTTTACCAATTCTTCTAC TTCTTCTTTGGGATAATAATGCCTTGACATTTGAAGGTCATAAACTTGTAAAATCATTGGAGGGTTGTACTTATATATGA CAACCAAAGAATATGGCTGGTAGTGTTTTCTTATGACAAAATAATTTTTAATTTTTTGTTCATCTGTAATCCTTGCTCCC TGGCAATATTATCATAGCTAGGATGATAGGTACTTAGAGAGTTAGCTAGTGACAGGGTTAGCTTATCAATAAGAGGGTTA GTGAGAGTGATTAGCATCTTGGGGATCTTTTGTGAAATTGGGAATAGGAGAGTCCAGGTTCTCTAGAACAACCTGGGATT ACTTTCAATAATATCAGAGTATTTCCTATCATCTTCTTGGCTGGTTCTATCATAGGATTTGGCACATTTTCTATATGTAT GTTGACAGTACAATGATGTCATTTTGTATAGGTTGCTTACCAACTTTAGCTACAATTCCTGTCTGGATTGGTCTCTACCA AGCATTATCAAATGTGGCAAATGAGGTAATTAATGTTTAAACTTTTATTCTTTGAGCAGAGCTTATGATGGATAGACTAC ACCTAGAATGTTACTTTTGCTAATTTTTGAAAACCTTTAATTTGAAGGGACTGTTAACAGAAGGTTTCTTATGGATCCCT TCTCTGGGTGGTCCTACTTCCATTGCTGCTAGACAAAGTGGATCTGGAATTTCTTGGCTTTTTCCATTTGTGGTAAGAAA GACATCCATCCTTTGTTTAATAAGCAAAATGATAGTTTGCATTTGATTATATTTTCCCTCAGGCCTGTGAGTCTGTGACG GACAGTATAACTTTCAGACATCACACTGTTGAGTGTTGACTCTTTATGGCCATTTTTATTTCGAACTTATTCCTAGTTGT GGGTCTGCAGACCATAATACTCTAAACTGTATATGACAAATGGTACATACAAACTTGGGAGTTTAGCATTGTGCTTGTTG AAATGCATATTGCAACATCAGTTAGTTGCTTTATGATTTTTATGAAGCTCAATATATGATAGCTGTGCTAGACTGGCGTT ATGCTAGATGTTGTTTACCACAGCTTGTTGTGGTAAACAACATTATATCCTTATTTACGTATTTCTTCTCTTTGATTGTC ATTTTTCCTTTAATTTTTTTTCTAGTAAAATTCACAAGTTCGTTTACTTTTTTAGGTGATGGTGTTAGATTTCACTACTT TCTTCATTGTTGACTCCTTTCTATATTTCCTTTCTTACTAAAAACCTGAACTAAATTTGCTGATGGCAGGGAGGGTTGGG AGGAACTTAATTGACTGCAATCATGTTTCTGTTGAAATATAATAGCATTTACTATTGGGAGGAATTTAATTGTCTGCAAT CATGTTTCTATTGAAAGATAATGGCATTTACTATTCAAAAATCAGAATGTAATGTAAATATGTAATGCTTTTTAGTCTAC AAATCATAATGACCCGAAAGAGGGTGCACATAATGGAGCAATGATAAAGTTATAGATGGAATGTTCACTTGTTGCACAGT TGCAGTCTTCTGTCAAGACAATAAATGGAAAACATTGTAAATTGATTTTGTACTTTTTGTCATTACACAGTATCCATAAC AATCATCTGTCATGCAGGATGGTCATCCACCTTTGGGTTGGCAGGATACTGCAGCATATCTTGTTTTACCTATTCTTTTA ATTGCTACTCAATATGTTTCAATGGAAATCATGAAACCACCTCAGGTAAACACATCAGTTATCCTACTATTTTTTTTTCT TCTGGGTTTACAGGGCAGGCCTAAATGACTTCTTTTGACAGTCAAACGACCCTACTCAAAAGAATACACAACTTATTTTC AAGTTTCTTCCGCTCATGATCGGTTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGGTTAGTTTTTCACAA ACTACATTTATGAAATCCTTTCTATTCAATAAATTATTGTTTTTCATATTTTTGTCATAACTCCGCACATGATTTGTTTT ATTTTGGGTTACAATTGTATTTATCTTCTACTCTAACTAAGCAAGTCCAACTTGGTCATCAAGTGAATACTTTTTGTTGA TTGAAATAAAAAAAATCTTGGATTAGGGAGGTGGTTGTGACAACATCACTTGTATGATAATTTACAAAAAGAAAAACTAA ACAATTTTGTTGCTTGTTTATATTCTATTTATTTTACTAGGTTTACGAACAATCTCCTGAGCACAGCTCAACAAGTATGG CTTCGCAAATTAGGAGGTGCAAAACCTGTTGTAGATGAAAATGCTGGTGGAATTATTACTGCAGGACGGGCTAAAAGATC AGCTTCTCAGCCAGCAAGGGCTGGTGAAAGGTCAGTGTTTTATGAGATAAGATGCAGCCCAAGTGTTTCAACTCCTATTG GACGTGTAATGAATTGGTGATCTACAGGTTTAGGCAGTCAAAAGAAGAGGAGAAGAATAAGAAGTTAATGAAGGCACTGC CAGGGGAAGAACTTCAACCTTTGGCTTCTGCTTCTGATGATGGCTCCGATGTAGAAAGTGACAACAAGGTAAATATTCAA CTTCTAGAGTTTCTTGGAAGAACTTTTATGTGATCAAGCTGTCTTTTTGAAATAAAATAAGAAAAATATCTACAATTTCA TGATTTAATATTACAAAGAAACCTTCACTATAAATTCAATGCTGTTGCACAAGGAGCACTTCCGCGGTAATTTATGTAAT TTTCCAATTTTACCTTTCTAGTTGTAGCTGATTACATAGGATTTCCTCTGCTGTAGGAGCTGATCTCCATCTTTCATTTA TATACATTCCAAGTTCTATTAGTCATCAACTTCTATCTAGCACTGCTTGCTCTTTGCTCCATCTTCATGTTCTAGCTACC ATGACATTCACCAATGTGCATGGAGATTACATTATTAATGAGTTAAAGCCCAACATTACTGTTAAACACCAATCTGCGGG GATAGAGATATATCTGTCTTTTGAATAAATCCTCACTCTTTGAAATGTTTATTCTAATTCTATAGCACACAGATTGAAAG GAGTGTCTTCCCTGTCTTGCTTTGCTACTAACATAACTGTGCAAAACTAGAGATGAGCATGCTGAATCACTTTATTGTGT GCTATAAATCTGCAACTGTCACTAGTGGAGGTAGTTGTGTGCAGAAAATGTTACATACTCTATCCGAACAAGAAATGCAA TTCAAGAGGCCTGATTATCTCCCACTCTTTATATCAACTCACTTCTTTCCTGATTCTTTCTTTTGCTCTCTTGCTTCTTT TTATTTCTCCAATATTCACCAAATCAAAATTGAATCACATGTCCTCTTTATCTCTCTTGAGTCTCTTCCTCCTTCTCCAA TTAAAAAAATATTTGATAAAAAATAAATAACAAGCAAGAGAGAATATAATATCATTAAATAGAGAGAACTTTTTAGTCGT GTGAATCTTTTTGTTGGAGGGACAAAAAAGGCAACATGTAATCTTAGTCCCCATCTGCTGATCCTGATCTCCTTCCTCAT TTCTCTCCCAGCCTGCTCTGTAGGCAAGATGTCACTCTGCTGATCCTGATCCTAATCTTAGTCACTCTGTTGTCCTAATG TTTGGTTTTGATTTTCTTTGAAAAGGAAATTACTGTAACTCTGTTATATTTTAAGATTGTTGATTGGGGTTTTCATTCTT TTACCAAAAATCCACAAAGCTAAGTTCTCATAATACAGGGACAGGAAGATGGAGAAGAAGCTTATGCCTCAAAAGTTGGT GAAGAGGTTCAAAGTTTTTCTAGGGAGAGAAGAAGCAAGCGTTCTAAGCGGAAGCGCGCTGTATAGAAGTATCACATACG GTTGTTTGTAGCTTATAGGGGAGTCTTGTATATCTCAACAGATTGTCCCATTTTTGGATTGACTATTCAATTGAATATGT AATTTAATCCTGCAAAGCATCTTGTATCAGTGAAGTAGTTTTCCACATGTTAGCTAATGCAAATTGTCTTATGTCATTCT TGATTCCTTATATTCATGATTCTCTTGCTGTAAGCAAGGAAGCATAGAAACTTGTAAAAACAATCAAATTTAAAGGAAAA TTTTACAAGCCTTAGTTTATCATGCTCATGGAGAGACTCACTGAATTTGAACTTTCGATTGAAACTTGTGCATGCACAGC TAATCTTTTAGTGGATTATTCAAGTAAATTAATGCCCATGTTTTTGTACAAACACAATGCACCTAAAAGTGGAATTTTGC TCAGACTGCAATCCATTGATCTACAGTATAACGTGAGCGAAAAATGTCTCCATTGAATTCTGATGCTGAATGATCAGTGT TTCCATGCATCTCTTTGCGGTTGTGATGGTGGGCGGTGATTCCCTATTGGGTTAGGCCCTGATGGACTTTTACGACTCTT CTTTTCTTTAACCTGTGATTTTCATTGCTCAAATCATAATTTTGCCATCAGATTATTAAGTAAAATGAATGAAAATATAA TTTAATAAAAAGAATAATTGATATCATTACTTACCCATGAAGGTATGGCATGTCCACCACGCAGCTTTGGACTAGCCTGT AGAGTCCTGGGATTGAAATGAACTATGTGCAGGAATATAAATAAGGTGAGATACAATTAGTTGAAATAAAAGAGTCAGCT ATTTGTGTTTTTCAAATTTAACGTACAAAAAGGAGAAAATTAACATCCAAGTGAAGTGCAATAACATGTATGTGAATGTT TTTCTAATGCGGTACTCTTTTACAGTTGATTATGAAATCAAAATCAATTCTTAAGAGAAGCCGATGTGAGTTTAAGAATT GATTTTACAAAAAGAGAAGCCGATTCAACTATAGAAAACAATATAGCTGAGTGCTTTGCAAGATAATTTGAAATACCTCC TGATTGAATAGCCTGAACATTAGCAGTGACATGATTGAATGCAGAAGCTGCAAGTAGAAGCCAAGCAAAGAGAACATGGA CGAAAATTTGTCTTCTCATCTTAGGCTTGCTCATAGTGAATGGGAGCGTTCGGCGTTTAATAGAGCATGTCACAAGCATG TTGTAGCTTATATTAGCTATGTCATTTGGTACTATATAATCATGACGAAACTTGAAAATTTATGTGAGAATGTTTGTTAA AGATGCCTGGGTATCCTATGCCCT
CDS sequence (LotjaGi2g1v0371800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAACACACTCATTTCTTCTCCATCTTTCACCGGCACTCCGCTCCCTTCACTCCCTCGCCGCCACTTCCCCCACCG CGCGGCCAGGCTACTCACCACCAAGGCCTTCCACCAAATCCCCCCAATTCACTCCATTAGCCATTCCCTTGACTTCGCCG GAATCGTCGCCAGGACCGAAGGTCTTCTTTACACGCTCGCCGACGCCGCCGTCGTCGCCGTTGATCCTGCCACGACTTCC GTCGATGCTGCTACACAGAAGAACGGAGGCTGGTTCGGCTTCATTTCCGAAGCCATGGAGTACGTGCTCAAGGTGTTGAA GGATGGTCTGTCTGCTGTGCATGTGCCTTACTCGTATGGATTCGCAATCATATTGCTCACTGTTATAGTTAAGGCCGCCA CGCTTCCATTGACAAAGCAACAGGTGGAATCAACACTGGCTATGCAAAATCTTCAACCTAAAATTAAGGCCATTCAAGAA AGATATGCCGGCAATCAGGAAAGAATACAACTTGAGACCTCAAGGCTATATACGCAGGCTGGGGTTAACCCGTTGGCAGG TTGCTTACCAACTTTAGCTACAATTCCTGTCTGGATTGGTCTCTACCAAGCATTATCAAATGTGGCAAATGAGGGACTGT TAACAGAAGGTTTCTTATGGATCCCTTCTCTGGGTGGTCCTACTTCCATTGCTGCTAGACAAAGTGGATCTGGAATTTCT TGGCTTTTTCCATTTGTGGATGGTCATCCACCTTTGGGTTGGCAGGATACTGCAGCATATCTTGTTTTACCTATTCTTTT AATTGCTACTCAATATGTTTCAATGGAAATCATGAAACCACCTCAGTCAAACGACCCTACTCAAAAGAATACACAACTTA TTTTCAAGTTTCTTCCGCTCATGATCGGTTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGGTTTACGAAC AATCTCCTGAGCACAGCTCAACAAGTATGGCTTCGCAAATTAGGAGGTGCAAAACCTGTTGTAGATGAAAATGCTGGTGG AATTATTACTGCAGGACGGGCTAAAAGATCAGCTTCTCAGCCAGCAAGGGCTGGTGAAAGGTTTAGGCAGTCAAAAGAAG AGGAGAAGAATAAGAAGTTAATGAAGGCACTGCCAGGGGAAGAACTTCAACCTTTGGCTTCTGCTTCTGATGATGGCTCC GATGTAGAAAGTGACAACAAGGGACAGGAAGATGGAGAAGAAGCTTATGCCTCAAAAGTTGGTGAAGAGGTTCAAAGTTT TTCTAGGGAGAGAAGAAGCAAGCGTTCTAAGCGGAAGCGCGCTGTATAG
Protein sequence (LotjaGi2g1v0371800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANTLISSPSFTGTPLPSLPRRHFPHRAARLLTTKAFHQIPPIHSISHSLDFAGIVARTEGLLYTLADAAVVAVDPATTS VDAATQKNGGWFGFISEAMEYVLKVLKDGLSAVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQE RYAGNQERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQSGSGIS WLFPFVDGHPPLGWQDTAAYLVLPILLIATQYVSMEIMKPPQSNDPTQKNTQLIFKFLPLMIGYFSLSVPSGLTIYWFTN NLLSTAQQVWLRKLGGAKPVVDENAGGIITAGRAKRSASQPARAGERFRQSKEEEKNKKLMKALPGEELQPLASASDDGS DVESDNKGQEDGEEAYASKVGEEVQSFSRERRSKRSKRKRAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 257 | 257 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 49 | 414 | 366 | 3.9E-170 | – | |
| PANTHER | 49 | 414 | 366 | 3.9E-170 | ||
| TIGRFAM | 118 | 332 | 215 | 2.0E-55 | ||
| Pfam | 119 | 333 | 215 | 1.8E-54 | ||
| Phobius | 258 | 277 | 20 | - | – | |
| Phobius | 278 | 296 | 19 | - | – | |
| Phobius | 297 | 318 | 22 | - | – | |
| TMHMM | 302 | 324 | 23 | - | – | |
| Phobius | 319 | 442 | 124 | - | – | |
| MobiDBLite | 352 | 442 | 91 | - | – | |
| MobiDBLite | 360 | 383 | 24 | - | – | |
| MobiDBLite | 400 | 430 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Membrane insertase activity | Mediates the integration of proteins into a membrane from the inner side of the membrane. Membrane insertases are highly conserved and include the bacterial YidC family, the plant chloroplast Alb3 family, and the fungal and animal mitochondrial Oxa1/Cox18 family. |
Expression pattern of LotjaGi2g1v0371800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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