Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0373800 |
| Transcript ID | LotjaGi2g1v0373800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin; TAIR: AT2G39700.1 expansin A4; Swiss-Prot: sp|O48818|EXPA4_ARATH Expansin-A4; TrEMBL-Plants: tr|A0A0S3SD28|A0A0S3SD28_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0373800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87070769..87072812) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGGCCAGAGTAGTGCTCTGCATTGTGTCCATTACCTCCATAATGTGGATGGTTCAAGCTAGAATCCCAGGTGTTTA CTCCGGCGGCGCGTGGGAAACTGCCCACGCCACCTTCTATGGAGGATCTGATGCTTCCGGCACCATGGGTCAGTACTCTG TAACACAAAACATAAACCACTTTTTCATTCAATTTTTGTGAAAATGTTGCATGAAACAAGCTACAATGCTAACTTTGTGT GAATTTTTTTTCTTTGTTTGTTTCAGGGGGGGCATGTGGGTATGGAAACTTGTACAGCCAGGGGTACGGTGTGAACACGG CGGCGCTGAGCACCGCGCTGTTCAACAGTGGCCTGAGCTGCGGTGCTTGTTTTGAGATCAAGTGTGCCAACGACAAGCAG TGGTGTCACTCCGGCAGCCCTTCCATCTTAATCACCGCCACGAACTTCTGTCCTCCTAACTTCGCTCTTCCCAGTGACAA TGGCGGGTGGTGCAACCCTCCTCGGCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAGATCGCTGAGTACCGCGCCG GCATCGTCCCCGTTGCGTTTCGCCGGTGAGCCATTTTCTGCAACGCTTCTCACTTTGCTTTGTTTTGCTACATTTTTACT CTGTTTTCACTTTTTCTCTGCTTTTGGTTTTTGGTTCATAATGCACTTCATTTTATTGACTAAAATTCATGTCTTTTGTC AAATAAAGAGTGAAAGCCACTTAATTCAAAGTGAAATAAGGAGACTTAGAGAGTGTACGGATAGTATTTCTCTAGGTCAT ATTTTCCACTCTACAGTGTAAAGCATGAGCTGGGATCTAAGGATATGTTTGGTATCTCTGACCTTAACACTTGGTTTAAG GTCAAAGTTGTAAAGAACTCTGCTGAATTGTTCAAGGGAACCCCACTTTATTATTGTATACTCTAAAATTTCTTTGGACT AACTTATAATCATTTAATATGTATTTATATTCTTTTATATTTTAATTTAATAAAAAAATTAATTTGTAATATGACAACCA ATCATTAGATATCTGAGACACAAAACACACAATATAGATATAACTCATTCACACCATATGGTTTTTCTTCCATCTTTGAT TCAATTTCTGTTCCAATCTTTATCTTATTTTTCGATTAAAATCACTTCATATTTTTTATTTCTCACTAGGTATAAGTAGG AAATTGGTATCACAACATCTTCATCCTAATAAATTCCATGTTAAACAGGACTTTTTTTTAACCTTTTTGAGGTTAATTGG CAAATGGATACACATGCTTTTGACTCGGGCACACCTAGTGAAAATCTAAACAACCACTAATTAAGCTTTAGTTTTTGTTG TTGTTGTACTAAATTATGCAATTTTGACCTTGGTGTGCTCATCCTTCTCCTGCTAGTGTCATCGTCTACCTTTTGGAATT TTGATTTTTAGTTACTTTTGGTGGTGATTTGCTTTTAAATTTGTCATATAAATGTGCATTACGTATGTCAAAGCACTCAA AATCAAGTTTGCATTACTTTATCTTCATTACGTCTATTCCCATTTAATATCATGCTCTCAACCATTTTGAGTAACATCAC TTGGCATTGTGGGCGGTTAGTTTGTTCTTTTATACGTGAATGAATGGAGGAGAGTGAAAAGGAGAGTTTGGAAACAGTTG TTTTCCAACTTGAAAAGTCAAAAGCAGTGACGACATTGTTTGGTATTTACGCAGGGTGCCATGTAGAAAGCGTGGTGGGA TAAGGTTCACCATCAACGGCCAACGTTACTTCAACCTGGTGCTCATTAGCAACGTGGCAGGTGCAGGGGATATTGTGCGC GCATATGTAAAAGGCTCCCGAACCGGATGGATTCCAATGAGCCGGAACTGGGGGCAGAATTGGCAATCGAACGCGGTTTT GGTGGGCCAAGCTCTTTCCTTCCGTGTTACTGGTAGCGACCGCCGCACCTCCACCTCATGGAACATCGCTCCCGCTGGTT GGCAATTCGGGCAAACTTTCATCGGAAAGAATTTCCGAATCTGA
CDS sequence (LotjaGi2g1v0373800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCCAGAGTAGTGCTCTGCATTGTGTCCATTACCTCCATAATGTGGATGGTTCAAGCTAGAATCCCAGGTGTTTA CTCCGGCGGGGGGGCATGTGGGTATGGAAACTTGTACAGCCAGGGGTACGGTGTGAACACGGCGGCGCTGAGCACCGCGC TGTTCAACAGTGGCCTGAGCTGCGGTGCTTGTTTTGAGATCAAGTGTGCCAACGACAAGCAGTGGTGTCACTCCGGCAGC CCTTCCATCTTAATCACCGCCACGAACTTCTGTCCTCCTAACTTCGCTCTTCCCAGTGACAATGGCGGGTGGTGCAACCC TCCTCGGCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAGATCGCTGAGGTGCCATGTAGAAAGCGTGGTGGGATAA GGTTCACCATCAACGGCCAACGTTACTTCAACCTGGTGCTCATTAGCAACGTGGCAGGTGCAGGGGATATTGTGCGCGCA TATGTAAAAGGCTCCCGAACCGGATGGATTCCAATGAGCCGGAACTGGGGGCAGAATTGGCAATCGAACGCGGTTTTGGT GGGCCAAGCTCTTTCCTTCCGTGTTACTGGTAGCGACCGCCGCACCTCCACCTCATGGAACATCGCTCCCGCTGGTTGGC AATTCGGGCAAACTTTCATCGGAAAGAATTTCCGAATCTGA
Protein sequence (LotjaGi2g1v0373800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVARVVLCIVSITSIMWMVQARIPGVYSGGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDKQWCHSGS PSILITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEVPCRKRGGIRFTINGQRYFNLVLISNVAGAGDIVRA YVKGSRTGWIPMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPAGWQFGQTFIGKNFRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 33 | 33 | 5.0 | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Gene3D | 17 | 134 | 118 | 4.6E-28 | ||
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 226 | 205 | - | – | |
| SUPERFAMILY | 28 | 150 | 123 | 5.58E-41 | ||
| PRINTS | 29 | 47 | 19 | 4.7E-35 | ||
| PANTHER | 30 | 226 | 197 | 6.1E-129 | – | |
| ProSiteProfiles | 30 | 132 | 103 | 24.161 | ||
| PANTHER | 30 | 226 | 197 | 6.1E-129 | – | |
| PRINTS | 42 | 56 | 15 | 1.9E-58 | ||
| SMART | 47 | 135 | 89 | 6.6E-46 | ||
| Pfam | 47 | 132 | 86 | 8.4E-17 | ||
| PRINTS | 51 | 69 | 19 | 4.7E-35 | ||
| PRINTS | 69 | 80 | 12 | 1.9E-58 | ||
| PRINTS | 83 | 93 | 11 | 1.9E-58 | ||
| PRINTS | 115 | 131 | 17 | 4.7E-35 | ||
| SUPERFAMILY | 129 | 220 | 92 | 2.35E-33 | ||
| PRINTS | 131 | 143 | 13 | 1.9E-58 | ||
| Pfam | 133 | 210 | 78 | 4.6E-25 | ||
| Gene3D | 135 | 224 | 90 | 9.8E-22 | ||
| ProSiteProfiles | 142 | 221 | 80 | 20.614 | ||
| PRINTS | 143 | 164 | 22 | 1.9E-58 | ||
| PRINTS | 169 | 183 | 15 | 4.7E-35 | ||
| PRINTS | 178 | 199 | 22 | 1.9E-58 | ||
| PRINTS | 207 | 221 | 15 | 4.7E-35 | ||
| PRINTS | 207 | 223 | 17 | 1.9E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi2g1v0373800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…