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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0374400 |
| Transcript ID | LotjaGi2g1v0374400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomere-binding family protein; TAIR: AT3G46590.1 TRF-like 1; Swiss-Prot: sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2; TrEMBL-Plants: tr|K7LPN4|K7LPN4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0374400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87116211..87120946) extracted from Lotus japonicus Gifu genome v1.2.
GGGTGGTTTTCAGAGGGTTTTGGTGATCCAAAATAACAAGCAATTTTCTCTCTTCAGTTTCATTTTCCTTTTCCTTTTCT CTGAGAAAATTCCAATCCAAATTTTCCCGGAAAACGAGAGAAACTGCATCTACGCTGAAAAGCTAGTGCTCTTTTTTCTC TTTGGTTTCTCCGACAATTCTCCGATCTTGCATTCGCCGGAATTTCACTTTTCCGGTTGAACTTCTGATCTCCGAACGAA AACTTCAGGGAAGAGGTTAGCGCGTACCAATCTCTGCAAATCAATTTTGATATTCGTGGGATGAGTTTTTGACTTTTTTC ATTGCAATGATTTTGGCATAACTTCAGAATTTTCGGTTCATGTTTCTGCAATTATCTGGATTTTGTTTTTGTTTTCGGTT TTTGTGATTTGGATTCTGTTCATGATTTGATCTCTCTGATTTCTGAGTAATTTTCATTGTGATTAATGGCTTAACTCTTA AGCAATGGGCTATACTCTGAGATCGAACGTATCTGAAATCTGCTTAGTTTGGCTTCTTCCTCACTTTTATCTGTATCTTC ATCTGAATCTGTATATTCATGTTTCAATTGCTTTCACCGCCGAGGTTTCTGGATCCGGTACCCAATTGGCTTCTCTGAAT ATAGAGGCTTAAGAATACAGTTGGAGTTTATTTGCTGTACAAAGTTTCAACTGAGAAAGATTGTTTTGGAAGCAATAATG TTCAGGCGAATCTGGTTCCCTCTTAGTGAAGGGTGCAATTTTTGATTTGCTAGTTTTTCTTTTTAGATGCTTTGTTATTC TGGAAGAAATTTAGTGGTGTATTGATATAACACATTATTATGCATACTTGGTACGAGTACTCTAAAGGGCTTAATTCTGA ATTGCATTACTTATGGGTGTTTATTGTCAGGCTTTCAAAGTGAGGCATGTGAGAGGTCAAGCAACACGAAGAGTGCTTAT TGATTTGATAACGGGACTTGGATTGCCCGCTTTTTGCGCTTGATTCATTCTATTTTGACATGTGTCATAAGATATGGTCT TGCAGAAGAGATTAGACTACGGATTTAATGGCTATCAGGCACCGGCCACACCCCGAGCTGTCCGATCAACTAGGGTAAAT ATGACCTTCTTCTCATATGGGGCTGATTTCTACTGTCTAATTAGAGATTTTATGAAATTAATCCTTATAACTATTTTCTT TTAAATGTTTTCCAGAGGAGGGCTAAATTTCAAACAAGAGCACAAGACAATGAAATGTGTGCATTTGAATTATTGGCCAC TGTAGCTGGCAAATTTCTGCTCGAGAAAGAGAATACAGCCCTGTACAGTGAAACATCATCTGAAAAGGATCAGCATGAAT TCCCACATCAAGATGAGGGCCATTCTTCAGGCACTGGCAAAATCCATGACAAAATTGAAGACAATGATAGCCAAGTTAGA TTAGGTTCTTCTGGGTGTCCAGAGGATAGTCTTTTCAAGTTAGATGGTGATACAAGTAAGGTAAAGGATGAGCTGCATAA GTTTGAGAAGGTGCCAATCGGCAACGGGGTTGAGTTGTGCAGTTTTGAGGATCTGTTGGGTGGAAATCCTCCTGCACTGA TCAGTTTAGGTGACAACACCAAATTGTCTGGGTCTAATGACATTCCCTGTAGCTCATTGTCCCATGGTAGTGACAATGTA CCAGTAGTTAGTAGAGATGATGACGAAAACTCTTCTTGGTGTACTCACCCTAGTACAAAAACCAAGTCCTTTAGGCCAAA GAAAGGTATATATGATAATAGAATAGGGAAAATATTGGCTTCTAAATTTCGAAAAGTTGCGGAAAAATCAAAAGATGTTA CACTTCCTAACAATGGTGAGTCCATGTTTATGGTATAAAATTACTGGCTTTCTTGTTTCTTTGTCTTTGCTTGTTCACTA ATGTTTTTTTCTTTTCTTTTGTTTTAAAAATTTGACGCATGTTAATATTAGATGGCAAATTGAAGCGAACTTACTGCAGT AAGAACTTCTATAGACGCCAAAGTTCTCAGATGAATGTTCCTTTCAAAAAGAGGAAGCTACTTAAATGTAGATCCATTTC AAACTCCAATCGATTTATCAGTAGGGGCATTTATTATTCACCTGAGAATGGTATGAATCAAGATGCTTTTGGTTCATCTC CTAGGATGGACAAAGGTTTTGCACTTCTACGCTTTCTCTTGTTCCAATTGATTTTTTGATTTTGTTTGGTCTTTATATTA ATGTGTCTCTAGAGTCTTTTGTCAAATAAATTCCAAATATTAGATGCAGACCCTAGAATATCATCCTTGGAAGCATGTCT ACTCTACACCAGACATTATGATGTAGAAGTTCTCATGATATGAGAACATTGAGAGAGTGATTATTTGTGTGTTCTCTTGC TTGATTGGTTTCTTCGAAGGGGTTCTGACATGTACGTGTCTTTCCTTTAACCAGTGAAGCTTAGGATCAAGTCGTTTAGA GTGCCAGAGCTTTTTATTGAGGTTCCAGAAACTGCAACTGTTGGGTCCCTGAAGGTGTAATAATCTTATGTTTTACGGTC TACATATATCATCCCCCCTTGTAATCTAGACACTCATGAGGGATGACATCTCTGTATTTTTTAAAGTTAAATTTGCATGT TTCATCAATCATAAGTTGGGCTTGGCTGCATCTTTTTCAACCCTTCTTTGGCATGCAGAGGACAGTGATGGATGCATTGA CTGCTGTACTTGGAGGTGGATTAGGCATTGGAGTTGTTCTCCAGGGAAAGAAAGTTAGAGATGACAGTATAACTCTACTT CAAACAGGAATTTCTCAAGATAAGCAGCTTGATGCTCTGGGTTTCACACTGGAGCCTAATTCTTCACAAAGCCTACCAAT TGTATGTGCTGCACAGTCTCTACATGATCCTATTGCAGACACTCCTCAACCTGTACTAAGGTAATGCATAACTTTCAAAT GAAGTTGTGGGTGTAATGACATACATGTAGTAGGAAGTGAGGGTATCAGTTAGTGTTCCTGATTACTTGAACTTGAATGC ACTGCCTCATTTTTGTTGACATTGTATTTTTTCTTCACAATGAGGTGTTAATAGTTAATATAGTTCATTTTAATGTATTC TCTACCATCATCAACATACGTTTCTATAAAATTATCAGATCTTTATATTGAAGATATTATTATTTAGTTTAATGGTTAAA AATGATAATTCAGGTATCCTTCCAGTCCAGCTGTAATTCATCGCAGGACTCAAGACAATTCTGACTTGTTACTTGACCAT CAATTAACCACTTTAGGAAACCTTGTTGAAAATGACCATGGTTCAGTACCTTTAGCTATCAACTCATCTGTTGACAAAGG TAGGACCGATTCCAAAGAATTGATTACTGTTCCTGAAATGGATAAGGAAGAACTAGCTAGTGCAACTGTGCTCCAGAAGT CAATACGAGCTGAGAATGTTCAACGCCGAATTCGTAGGCCTTTTTCTGTGGGTGAAGTAGAAGCACTGGTTCAAGCAGTC GAGGAACTGGGAATTGGAAGGTAAGATTTTACATTGGGCTTACTTTGGCCTGACAATCAGTAATATTTAGTGGGTTGTTT ATCTTCTGTAATTTCAATGAGATAATGCACTTTAGTTCTAGGAGAAATTTCCTCTGACAATCCCTTTATCTTGTGTTTCT ATTTTCTTAAATACAACCAGGTGGCGGGATGTTAAACTTCTTGCTTTTGAAAATGCAGAGCATCGGACATATGTGGATTT GAAGGTAAAAACGTTTGTGACCCTTGTGCAAATATATTTCAATCAGATATATATGTTCTATTGTTAAGTTTTGGCCCTTT GAACCGGGACCCCTATTGTTAAGATAAACGTACTTACAATATCCACTCATTCAGGATTTAATTGATGTAGTTGCTATTCA TTAAGGTGATCTTTATTTTGAATTAATGATTGGTCCCTGTAGCTTTCATTTATTAAGGAATTTGACCTAATGAGACCAGT ATCTTATTTAAACAAAAAACATTTTGATGCTGTTTCTCCTTTTCATTAAAATTTATGTAAGATAGTGATGGGGTCTGAAA GAAAAGATCAAAAGTGCTTTGATTAGCATAATATTGGTTCACTTATCTATCATGTATACTAGAGAAAATGTTTAACATGT GATTTTGGATTGTGTAGGACAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGAGGAGAGCCT GTTCCCCAAGAACTTTTGGACAGGGTCCTAACTGCACAAGCATATTGGTCTAATAAGGAATTGTCACCTTCACATGGCTT TGTAGATGGAGTGGGGGCTTTGGTTTCTGACCTTTATTATTAGAGTGTCTTTTTAATTTTTTAACAAAGAATATTTTAGT AAAACTCTGTTTATATTATCAATTATGTAAAAGTGATTATGTGATATGTCAAGGGGAAAAAGTGAAGCCTAGAGACGTGG TGCTTCTTTCCTTGCGCGGAGAGGCTGCTTCTTTTATATGGTTGATATGCAATAAAGAGCTTCCAACATAATTCTTTTGA TGCTAATGTGACTGTGAATATTTTATTTGCTGTGGATAAAAAGTTGTGTTTGTACTGGCACTGCTTTATAGTTGAAAACT TGAAATCTACTTTTAGTTAACTAAATTTCTAAGGATATCTAGGACCAATGGCAGACGATGATGTTATCTGACTACAAGAA TTATCTACAACCAATG
CDS sequence (LotjaGi2g1v0374400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCTTGCAGAAGAGATTAGACTACGGATTTAATGGCTATCAGGCACCGGCCACACCCCGAGCTGTCCGATCAACTAG GAGGAGGGCTAAATTTCAAACAAGAGCACAAGACAATGAAATGTGTGCATTTGAATTATTGGCCACTGTAGCTGGCAAAT TTCTGCTCGAGAAAGAGAATACAGCCCTGTACAGTGAAACATCATCTGAAAAGGATCAGCATGAATTCCCACATCAAGAT GAGGGCCATTCTTCAGGCACTGGCAAAATCCATGACAAAATTGAAGACAATGATAGCCAAGTTAGATTAGGTTCTTCTGG GTGTCCAGAGGATAGTCTTTTCAAGTTAGATGGTGATACAAGTAAGGTAAAGGATGAGCTGCATAAGTTTGAGAAGGTGC CAATCGGCAACGGGGTTGAGTTGTGCAGTTTTGAGGATCTGTTGGGTGGAAATCCTCCTGCACTGATCAGTTTAGGTGAC AACACCAAATTGTCTGGGTCTAATGACATTCCCTGTAGCTCATTGTCCCATGGTAGTGACAATGTACCAGTAGTTAGTAG AGATGATGACGAAAACTCTTCTTGGTGTACTCACCCTAGTACAAAAACCAAGTCCTTTAGGCCAAAGAAAGGTATATATG ATAATAGAATAGGGAAAATATTGGCTTCTAAATTTCGAAAAGTTGCGGAAAAATCAAAAGATGTTACACTTCCTAACAAT GATGGCAAATTGAAGCGAACTTACTGCAGTAAGAACTTCTATAGACGCCAAAGTTCTCAGATGAATGTTCCTTTCAAAAA GAGGAAGCTACTTAAATGTAGATCCATTTCAAACTCCAATCGATTTATCAGTAGGGGCATTTATTATTCACCTGAGAATG GTATGAATCAAGATGCTTTTGGTTCATCTCCTAGGATGGACAAAGTGAAGCTTAGGATCAAGTCGTTTAGAGTGCCAGAG CTTTTTATTGAGGTTCCAGAAACTGCAACTGTTGGGTCCCTGAAGAGGACAGTGATGGATGCATTGACTGCTGTACTTGG AGGTGGATTAGGCATTGGAGTTGTTCTCCAGGGAAAGAAAGTTAGAGATGACAGTATAACTCTACTTCAAACAGGAATTT CTCAAGATAAGCAGCTTGATGCTCTGGGTTTCACACTGGAGCCTAATTCTTCACAAAGCCTACCAATTGTATGTGCTGCA CAGTCTCTACATGATCCTATTGCAGACACTCCTCAACCTGTACTAAGGTATCCTTCCAGTCCAGCTGTAATTCATCGCAG GACTCAAGACAATTCTGACTTGTTACTTGACCATCAATTAACCACTTTAGGAAACCTTGTTGAAAATGACCATGGTTCAG TACCTTTAGCTATCAACTCATCTGTTGACAAAGGTAGGACCGATTCCAAAGAATTGATTACTGTTCCTGAAATGGATAAG GAAGAACTAGCTAGTGCAACTGTGCTCCAGAAGTCAATACGAGCTGAGAATGTTCAACGCCGAATTCGTAGGCCTTTTTC TGTGGGTGAAGTAGAAGCACTGGTTCAAGCAGTCGAGGAACTGGGAATTGGAAGGTGGCGGGATGTTAAACTTCTTGCTT TTGAAAATGCAGAGCATCGGACATATGTGGATTTGAAGGACAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCT CAGCAAAGGAGAGGAGAGCCTGTTCCCCAAGAACTTTTGGACAGGGTCCTAACTGCACAAGCATATTGGTCTAATAAGGA ATTGTCACCTTCACATGGCTTTGTAGATGGAGTGGGGGCTTTGGTTTCTGACCTTTATTATTAG
Protein sequence (LotjaGi2g1v0374400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLQKRLDYGFNGYQAPATPRAVRSTRRRAKFQTRAQDNEMCAFELLATVAGKFLLEKENTALYSETSSEKDQHEFPHQD EGHSSGTGKIHDKIEDNDSQVRLGSSGCPEDSLFKLDGDTSKVKDELHKFEKVPIGNGVELCSFEDLLGGNPPALISLGD NTKLSGSNDIPCSSLSHGSDNVPVVSRDDDENSSWCTHPSTKTKSFRPKKGIYDNRIGKILASKFRKVAEKSKDVTLPNN DGKLKRTYCSKNFYRRQSSQMNVPFKKRKLLKCRSISNSNRFISRGIYYSPENGMNQDAFGSSPRMDKVKLRIKSFRVPE LFIEVPETATVGSLKRTVMDALTAVLGGGLGIGVVLQGKKVRDDSITLLQTGISQDKQLDALGFTLEPNSSQSLPIVCAA QSLHDPIADTPQPVLRYPSSPAVIHRRTQDNSDLLLDHQLTTLGNLVENDHGSVPLAINSSVDKGRTDSKELITVPEMDK EELASATVLQKSIRAENVQRRIRRPFSVGEVEALVQAVEELGIGRWRDVKLLAFENAEHRTYVDLKDKWKTLVHTARISP QQRRGEPVPQELLDRVLTAQAYWSNKELSPSHGFVDGVGALVSDLYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 99 | 99 | 1.3E-215 | – | |
| PANTHER | 1 | 99 | 99 | 1.3E-215 | – | |
| MobiDBLite | 65 | 92 | 28 | - | – | |
| PANTHER | 106 | 587 | 482 | 1.3E-215 | – | |
| PANTHER | 106 | 587 | 482 | 1.3E-215 | – | |
| SUPERFAMILY | 307 | 392 | 86 | 7.47E-6 | ||
| Gene3D | 491 | 592 | 102 | 1.4E-41 | – | |
| ProSiteProfiles | 498 | 557 | 60 | 12.548 | ||
| SMART | 502 | 555 | 54 | 3.6E-5 | ||
| SUPERFAMILY | 504 | 584 | 81 | 2.64E-14 | ||
| CDD | 504 | 554 | 51 | 9.02986E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0374400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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