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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0374700 |
| Transcript ID | LotjaGi2g1v0374700.2 |
| Related isoforms 10 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710; TrEMBL-Plants: tr|A0A151R3Y3|A0A151R3Y3_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi2g1v0374700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87165732..87167985) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGGCTTTGTTCATAGTCATTGTTACAAACACTGAACATAACACAAGTCAAGCTTGTTGAAGCTTGCTTAATTTCTCT ACTCACAGTCTCTGGTGCTTTCGTTTGCACCTTTAACGTGCTCAGATACATGGACCTGGTCACCTGGCACACACACACAC ACACACACACACAAAACTCTACATTTTTCTCTTACTCCTAATTTTCCTCACACACTCTGTTTTTCTTTCTTTCAAGTATG GCCGTTTCAATCCCAGATCTGAACGGCGGAAGTGAGCGGTGGTGAGTGTTTTGGAATTGTCAAATGGGTATTTTCGGTTT TTCATTAAAAAAATTAGGGTGAACCGCCCACCATAGAAGATGACCTTTGTTACTTCATTGGTTGCCGTGAAACTGAAAAC CCTGCAACCCTATGACTATGACTAAGATTAAGATTATGAAGCTCCTAAGTCATCATCATCGTGTTTCATTCAAAACCTTC CGCCACGTGCTCCGATACGGCAACGTCAACACTTACAGCGTCATGATCCCATCGCCGGAGAAGAAGGTGGGGCAACCGAA ACCAACCACTGAGAACCAAAATTCAGTTTCGTTGAATGCGGCTGTTCAGGACTTGTGCCGGAAAAGTAGGATGTCAGAGG CTATGGTGATGTTTGAGAAGATCAATCGGACGGGTTTGGCCCCAGATAAGAGGACTTACATGGCTCTGTTTCACATGTTC TGCCGCCAGTTTCTCTATGAACAGGCTTATAAGCTTTTGACTGAAATGGTTGTTAGGGGGTTTTCACCCTCGGTTTCTTC ATTCAACAAGCTTATTCGTAGGTATTGCTCTGAGGGGACACTTGAGGAGCTTGAGGAGGCTCTGTGGATTCTGAGGGGCA TGCCTGAGATGGGCTTGTCCCCTGATGCTGTTAGTTATGCCACTGTTATATCCGGGTTTTGCCGAATCAGGAAGCCCATG AAGGCGTATGAATTGAAGCTGGAAATGGTTGACAAGGGCATCTTGCCTAAATTTGGCACATATTCGCAGCTTATAGACTA CATGTACCAACATGGGAGACTGTCCGAAGCTTTTGATCTCTTCCGAGAGATGCTGCGCGCGGGTGTCTGGCGACACTCGC CAGATAAGTATTATTATTTAACTGGAAATTATTCTAAGTTGATGCATGCTTATTGTGATAAAGGTGAAATCAGTAAGGCT TTTCTTGTGCATGATGAAATGATACACAATGGTATTTTCCCTGATGCTCACAAGTATTCGAAGCTTATACAGAAGCTGTG CCTGTATCGGAGACTGTCGGAAGCTCTTTATTTCTTCCGAGAGATGCTGCGCGAGGGTGTATGGCCACGCCATCAAGATA ATAAGTATAAATATGTAACTGAAAGTTATTTTAGTTTGAGGAATGCTTATTGTGCTGAAGGTGAATTCAGTAAGGCTTTT CATTTGCATGATGAAATGATACACATTGGTATTTTGTGTGATTTTATTACTGGGTTTTCACCGTCTCTTGTTACATACAA CGCGCTTATTCATGGTTATTGTTTTTTTGGGAGGTTTGAAGAGGCTCTGGGAATTTTGAGGGGCATGGCTGACATGGATT TGTCCCCTGATGTTGTAAGTTATGGCGCTATTATATCCGGGTTTTGCCGAAACCGGGAGCTGGGGAGGGCGTTTGAATTG AAGCTGGAGATGAAAGAGAAGGATATCTACGGGATGGATAGAGCCGTATATTCATCACTTATGCAAGGCTTGTCGGATGA GGTTACTTATACAAGTTTGATAAATGCTTATTGTGCAAAAGGTGAAGTGGACAAGGCTCGTACATTGTTGCTGGAAATGA AAGTCAATGGTTATTTGTCAGATTCTGATAGTGAACTGGAGTAATAATCAATTTAAAAGTGTGTTAGGGCTTGTCAAAGG TTTCCTCATGAGGGATTTAGTGAATGAAGCAGCCCGAGCTCATAACACAATGCTTGAGCAGTTTATAATTTATTAATATT TGATCATTGTAGATCTCTTAATGATCTTAAGGCGTATAATATGCACACCGAGATGGTGGATTATGGTTTTATTCCTCATA TGTTCTTTGTACTTGCTTTTCTTAATGCTCTATATGATGATGGAAGGTACAATGAGATGAGGTGGGTAATTCAAAACACA TCTCATTGATTCTGAGCTAGTTAATGTAGTTAATGAAATTGACGTCAGAAATGTGAAATTGATGCTCTTCGAATGTGCTA GCTGAAATAGCCAT
CDS sequence (LotjaGi2g1v0374700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTATGACTAAGATTAAGATTATGAAGCTCCTAAGTCATCATCATCGTGTTTCATTCAAAACCTTCCGCCACGTGCT CCGATACGGCAACGTCAACACTTACAGCGTCATGATCCCATCGCCGGAGAAGAAGGTGGGGCAACCGAAACCAACCACTG AGAACCAAAATTCAGTTTCGTTGAATGCGGCTGTTCAGGACTTGTGCCGGAAAAGTAGGATGTCAGAGGCTATGGTGATG TTTGAGAAGATCAATCGGACGGGTTTGGCCCCAGATAAGAGGACTTACATGGCTCTGTTTCACATGTTCTGCCGCCAGTT TCTCTATGAACAGGCTTATAAGCTTTTGACTGAAATGGTTGTTAGGGGGTTTTCACCCTCGGTTTCTTCATTCAACAAGC TTATTCGTAGGTATTGCTCTGAGGGGACACTTGAGGAGCTTGAGGAGGCTCTGTGGATTCTGAGGGGCATGCCTGAGATG GGCTTGTCCCCTGATGCTGTTAGTTATGCCACTGTTATATCCGGGTTTTGCCGAATCAGGAAGCCCATGAAGGCGTATGA ATTGAAGCTGGAAATGGTTGACAAGGGCATCTTGCCTAAATTTGGCACATATTCGCAGCTTATAGACTACATGTACCAAC ATGGGAGACTGTCCGAAGCTTTTGATCTCTTCCGAGAGATGCTGCGCGCGGGTGTCTGGCGACACTCGCCAGATAAGTAT TATTATTTAACTGGAAATTATTCTAAGTTGATGCATGCTTATTGTGATAAAGGTGAAATCAGTAAGGCTTTTCTTGTGCA TGATGAAATGATACACAATGGTATTTTCCCTGATGCTCACAAGTATTCGAAGCTTATACAGAAGCTGTGCCTGTATCGGA GACTGTCGGAAGCTCTTTATTTCTTCCGAGAGATGCTGCGCGAGGGTGTATGGCCACGCCATCAAGATAATAAGTTTGAA GAGGCTCTGGGAATTTTGAGGGGCATGGCTGACATGGATTTGTCCCCTGATGTTGTAAGTTATGGCGCTATTATATCCGG GTTTTGCCGAAACCGGGAGCTGGGGAGGGCGTTTGAATTGAAGCTGGAGATGAAAGAGAAGGATATCTACGGGATGGATA GAGCCGTATATTCATCACTTATGCAAGGCTTGTCGGATGAGGTTACTTATACAAGTTTGATAAATGCTTATTGTGCAAAA GGTGAAGTGGACAAGGCTCGTACATTGTTGCTGGAAATGAAAGTCAATGGTTATTTGTCAGATTCTGATAGTGAACTGGA GTAA
Protein sequence (LotjaGi2g1v0374700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMTKIKIMKLLSHHHRVSFKTFRHVLRYGNVNTYSVMIPSPEKKVGQPKPTTENQNSVSLNAAVQDLCRKSRMSEAMVM FEKINRTGLAPDKRTYMALFHMFCRQFLYEQAYKLLTEMVVRGFSPSVSSFNKLIRRYCSEGTLEELEEALWILRGMPEM GLSPDAVSYATVISGFCRIRKPMKAYELKLEMVDKGILPKFGTYSQLIDYMYQHGRLSEAFDLFREMLRAGVWRHSPDKY YYLTGNYSKLMHAYCDKGEISKAFLVHDEMIHNGIFPDAHKYSKLIQKLCLYRRLSEALYFFREMLREGVWPRHQDNKFE EALGILRGMADMDLSPDVVSYGAIISGFCRNRELGRAFELKLEMKEKDIYGMDRAVYSSLMQGLSDEVTYTSLINAYCAK GEVDKARTLLLEMKVNGYLSDSDSELE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 146 | 140 | 1.3E-18 | ||
| PANTHER | 54 | 243 | 190 | 2.5E-66 | – | |
| ProSiteProfiles | 57 | 91 | 35 | 9.788 | ||
| ProSiteProfiles | 92 | 126 | 35 | 10.589 | ||
| TIGRFAM | 95 | 128 | 34 | 9.2E-5 | ||
| Pfam | 95 | 140 | 46 | 1.7E-9 | ||
| ProSiteProfiles | 127 | 164 | 38 | 10.008 | ||
| Gene3D | 147 | 245 | 99 | 1.8E-20 | ||
| Pfam | 164 | 208 | 45 | 8.1E-8 | ||
| ProSiteProfiles | 165 | 199 | 35 | 11.389 | ||
| TIGRFAM | 167 | 199 | 33 | 7.6E-6 | ||
| ProSiteProfiles | 200 | 234 | 35 | 9.514 | ||
| TIGRFAM | 203 | 232 | 30 | 1.1E-5 | ||
| ProSiteProfiles | 243 | 277 | 35 | 10.128 | ||
| Gene3D | 246 | 314 | 69 | 1.8E-12 | ||
| TIGRFAM | 247 | 279 | 33 | 3.3E-7 | ||
| PANTHER | 247 | 419 | 173 | 2.5E-66 | – | |
| Pfam | 247 | 290 | 44 | 3.3E-8 | ||
| ProSiteProfiles | 278 | 312 | 35 | 10.49 | ||
| TIGRFAM | 282 | 310 | 29 | 3.2E-4 | ||
| Gene3D | 315 | 386 | 72 | 7.7E-13 | ||
| Pfam | 336 | 385 | 50 | 5.7E-9 | ||
| ProSiteProfiles | 337 | 371 | 35 | 10.03 | ||
| TIGRFAM | 339 | 370 | 32 | 1.1E-5 | ||
| Pfam | 386 | 414 | 29 | 7.8E-9 | ||
| ProSiteProfiles | 386 | 420 | 35 | 11.981 | ||
| Gene3D | 387 | 424 | 38 | 2.8E-6 | ||
| TIGRFAM | 388 | 419 | 32 | 2.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0374700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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