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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0376100 |
Transcript ID | LotjaGi2g1v0376100.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT1G07510.1 FTSH protease 10; Swiss-Prot: sp|Q0DHL4|FTSH8_ORYSJ ATP-dependent zinc metalloprotease FTSH 8, mitochondrial; TrEMBL-Plants: tr|A0A0D2QCK5|A0A0D2QCK5_GOSRA Uncharacterized protein; Found in the gene: LotjaGi2g1v0376100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87341909..87345207) extracted from Lotus japonicus Gifu genome v1.2.
CTGAGTGTGTCTTTGCCTGATAATTGGAATGTGAATCCAATCATATGCATTTTGGTTTCTTTTTCATTGTTAACTTGCCA TCATCTTGCTGACCCGACCAGAGTTTGAATCTTTGCAGATTAGCTTTCAAGAGTTTAAAAATAAGCTGTTGGAACCAGGG TTAGTAGACCATATTGTTGTCTCAAACAAATCAGTTGCTAAAATATATGTAAGGAGCTCTCCCCGTGATCAAACAGATGG TGAAATGGTCCAAGGGACCCTCCCTCCAAAGGGATCTGGAGGCCAATACAAATATTTTTTCAATATTGGAAGTGTTGAGT CTTTTGAGGAGAAGTTAGAGGAAGCACAAGAAGCACTGGGAATCGACTCTCATGATTATGTACCTGTTACATATTCTTCT GAAATGGTTTGGTACCAGGAATTGATGAGATTTGCTCCAACACTGTTGCTTTTGGGATCTCTCCTATATATGGGAAGAAG AATGCAAGGTGGAATTGGTGTTGGCGGTGGCGGCGGTGGTAAGGGTGCTCGTGGAATATTCAACATAGGAAAAGCCCATG TTACTAAAGTAGACAAAAATGCCAAAAACAAGGTTAGTAGCTTTCTTATTCTTCTACAAATGATGGTTATTGTTTTTTAA GAGCATGCTCCCTAGTTTCCATTATTGTCTTTCCCATTATAGTTTTCTCTCTAAGGAATCATGTCTTGTGCGAATAAGTT GGTGATGAGCATTTGAGAGACTATATTTTTCATTATTTATATTCATTTGGTCAGGTCTATTTCAAAGATGTTGCTGGCTG TGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTTAAGAACCCAAAAAAATATGAAGAACTTGGTGCGAAAA TTCCAAAAGGTGCTCTCCTGGTTGGTCCTCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGAGAGTCTGCT GTACCATTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGTCGGGCCATCTAGGGTGAGAAACTTGTT TCAGGAAGCAAGACAGTGTGCTCCCAGTATAATATTTATTGATGAGATTGATGCGATTGGTCGAGCAAGGGGACGTGGAG GTTTCTCTGGAGCAAATGATGAGCGCGAAAGTACTTTAAATCAATTGTTGGTCGAGATGGATGGTTTTGGAACCACAGCT GGAGTTGTTGTGCTGGCAGGAACAAATAGACCTGATATATTAGACAGTGCCCTACTTAGACCTGGGCGATTTGATCGCCA GATTTCAATTGATAAACCTGATATTAAAGGTCGTGACCAGATATTTCAGATATACTTGAAAAAGATTAAACTTGACCATG AGCCTTCATATTTTTCACAAAGACTTGCAGCCCTTACTCCAGGATTTGCTGGAGCCGACATTGCTAATGTTTGCAATGAA GCTGCTCTGATTGCTGCAAGAGGTGACAAAACACAAGTCACAATGGACCATTTTGAGGCAGCTATTGATAGGATTATTGG TGGTTTGGAGAAGAAGAACAAGGTATGCCATTTTTAGTTTTTATATTATTATTTAGAAAGATCTAGCCTATAGGAAAGGG GCAGGGTAGCTGCACATTATAGGCATAGTTGTAGCCTTCATTTTTCCCATATTACTTTCCTTTCATCATCATTGTGAGTA AAATGAAGCTTTAGCAGAGAATATAGTTTATTTATTTTAATAAATATTGTTCCACATGGTATTGGTTACTTACGATGGAG AATGAAAATGTCCCTGAGTAGACCGTCCCTTATACCCCAGATCTTCTAGTTTATTTGTATATCTAATTCGCAAAGATAGT TGTTCTTTGGCTGTTGTTGCATTTTAAGGCTTCATGATGATGAAGATTATATGCTACATTGAATTGAAAGTATTGAACCA AGTTTGGAGCTCTCACTTTGTATTTTTTTTTTCAGTTACTGGTTAAAAGTTTCTCTAATAACTTGTTTCTTATCAAGGTA ATAAGCAAGCTGGAAAGGCGTACTGTCGCTTACCATGAGTCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACATGCTGA TCCCTTGTTGAAAGTAACTATTGTTCCTCGTGGAACTGCTGCTCTTGGATTTGCGCAGTACGTTCCAAATGAGAACCTTC TCTTGACAAAGGAGCAGATGTTTGATATGACTTGTATGACCCTTGGTGGTCGGGCTGCAGAGCAGGTTGTTTAGCATTTC CAATTTTGTTTACTTACTGTTTTTCTCTCCTTTTTTCATTAGCTCTTTGCTGTATGACTAATGTTGATATTCTAGTGAAA GGGTGTAACATGTTTCAGACTTTTGACTAGTCTCACATTGATTAGTGATATAACTAAATAAGTCCTTATATATGGTAGAG AAATCCTCACCTCGAGCTTAGCTTTTGGGCTAGAGTTAGATCTAGCCCGAAAATCGAATATGGCATTAGAGCCTATCCTA AATCTGTTTATTGAAGATCACCCATAAATGGGCTACGACTACCCATGGCCAGTCCTGAAAATTTCATGCTCCAGATTTTC AGCTCGGGGGTGAGGGTGTGTTGAGGAGTCCCACATTAACTAGTGATATGACTAAATAATTATTTATATAGATAGAGCAT TTCTCATCCCTGAGCTAGTTTCTGGGGTAAACTTGGGCTTAGCCTGATTTCTAATTCAGACACTGTACATTACTTATTAT ATTTTTCAAATTCAAATCTTATTACTGCCTTGTTTTATTGTATAATGTTTTTCTCCAATTCAAATCTGAGAAAATGATTG TTTCCCTCCCTTGTTACTGCAGGTTCTCATAGGGCAAATCTCAACAGGAGCACAGAACGACTTGGAAAAAGTGACAGACT GGAGTTATAAACAAGTGGGTGTCCTAGGTTTCAATGAGGAAGTGGGCCTCCTATCTTTCCCTCAGAAAGAAGACTCATTT GGGTCGAAGCCATATAGCAGCGAAACTGCTGCATTGATTGATAGGGAAGTGAGAAAATTGGTGAAGAAAGCATATGACCA TACAGTAAATTTAATTGAGGAACACAAGGAGCAGGTAGCTCAAATTGCAGAGTTGCTGCTGGAAAAAGAAGTACTTCACC AAGATGACTTGCGTCGAGTTTTGGGTGAGCGTCCCTTCAAGGCCAGTGAACCCACCAATTATGATACCTTTAAGCAAGGT TTCCAAGAGGACGAGACAAAAAACATAGAAAGCATGGTCGATGTGGCTGAAGAGGGTGGTGGGGATTCACCTTTTGATCC TCAGGTAGTTCCCACATAG
CDS sequence (LotjaGi2g1v0376100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCCAAGGGACCCTCCCTCCAAAGGGATCTGGAGGCCAATACAAATATTTTTTCAATATTGGAAGTGTTGAGTCTTT TGAGGAGAAGTTAGAGGAAGCACAAGAAGCACTGGGAATCGACTCTCATGATTATGTACCTGTTACATATTCTTCTGAAA TGGTTTGGTACCAGGAATTGATGAGATTTGCTCCAACACTGTTGCTTTTGGGATCTCTCCTATATATGGGAAGAAGAATG CAAGGTGGAATTGGTGTTGGCGGTGGCGGCGGTGGTAAGGGTGCTCGTGGAATATTCAACATAGGAAAAGCCCATGTTAC TAAAGTAGACAAAAATGCCAAAAACAAGGTCTATTTCAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGG AGTTTGTCCACTTCCTTAAGAACCCAAAAAAATATGAAGAACTTGGTGCGAAAATTCCAAAAGGTGCTCTCCTGGTTGGT CCTCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCAACTGCAGGAGAGTCTGCTATGGATGGTTTTGGAACCACAGCTGG AGTTGTTGTGCTGGCAGGAACAAATAGACCTGATATATTAGACAGTGCCCTACTTAGACCTGGGCGATTTGATCGCCAGA TTTCAATTGATAAACCTGATATTAAAGGTCGTGACCAGATATTTCAGATATACTTGAAAAAGATTAAACTTGACCATGAG CCTTCATATTTTTCACAAAGACTTGCAGCCCTTACTCCAGGATTTGCTGGAGCCGACATTGCTAATGTTTGCAATGAAGC TGCTCTGATTGCTGCAAGAGGTGACAAAACACAAGTCACAATGGACCATTTTGAGGCAGCTATTGATAGGATTATTGGTG GTTTGGAGAAGAAGAACAAGGTAATAAGCAAGCTGGAAAGGCGTACTGTCGCTTACCATGAGTCAGGCCATGCTGTTGCA GGTTGGTTCTTGGAACATGCTGATCCCTTGTTGAAAGTAACTATTGTTCCTCGTGGAACTGCTGCTCTTGGATTTGCGCA GTACGTTCCAAATGAGAACCTTCTCTTGACAAAGGAGCAGATGTTTGATATGACTTGTATGACCCTTGGTGGTCGGGCTG CAGAGCAGGTTCTCATAGGGCAAATCTCAACAGGAGCACAGAACGACTTGGAAAAAGTGACAGACTGGAGTTATAAACAA GTGGGTGTCCTAGGTTTCAATGAGGAAGTGGGCCTCCTATCTTTCCCTCAGAAAGAAGACTCATTTGGGTCGAAGCCATA TAGCAGCGAAACTGCTGCATTGATTGATAGGGAAGTGAGAAAATTGGTGAAGAAAGCATATGACCATACAGTAAATTTAA TTGAGGAACACAAGGAGCAGGTAGCTCAAATTGCAGAGTTGCTGCTGGAAAAAGAAGTACTTCACCAAGATGACTTGCGT CGAGTTTTGGGTGAGCGTCCCTTCAAGGCCAGTGAACCCACCAATTATGATACCTTTAAGCAAGGTTTCCAAGAGGACGA GACAAAAAACATAGAAAGCATGGTCGATGTGGCTGAAGAGGGTGGTGGGGATTCACCTTTTGATCCTCAGGTAGTTCCCA CATAG
Protein sequence (LotjaGi2g1v0376100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQGTLPPKGSGGQYKYFFNIGSVESFEEKLEEAQEALGIDSHDYVPVTYSSEMVWYQELMRFAPTLLLLGSLLYMGRRM QGGIGVGGGGGGKGARGIFNIGKAHVTKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVG PPGTGKTLLAKATAGESAMDGFGTTAGVVVLAGTNRPDILDSALLRPGRFDRQISIDKPDIKGRDQIFQIYLKKIKLDHE PSYFSQRLAALTPGFAGADIANVCNEAALIAARGDKTQVTMDHFEAAIDRIIGGLEKKNKVISKLERRTVAYHESGHAVA GWFLEHADPLLKVTIVPRGTAALGFAQYVPNENLLLTKEQMFDMTCMTLGGRAAEQVLIGQISTGAQNDLEKVTDWSYKQ VGVLGFNEEVGLLSFPQKEDSFGSKPYSSETAALIDREVRKLVKKAYDHTVNLIEEHKEQVAQIAELLLEKEVLHQDDLR RVLGERPFKASEPTNYDTFKQGFQEDETKNIESMVDVAEEGGGDSPFDPQVVPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 55 | 55 | 3.3E-15 | – | |
PANTHER | 2 | 179 | 178 | 0.0 | – | |
PANTHER | 2 | 179 | 178 | 0.0 | – | |
Gene3D | 104 | 177 | 74 | 6.4E-21 | – | |
SUPERFAMILY | 116 | 291 | 176 | 1.64E-39 | ||
CDD | 153 | 182 | 30 | 2.03418E-6 | – | |
Pfam | 157 | 177 | 21 | 1.8E-4 | ||
Gene3D | 178 | 218 | 41 | 4.1E-10 | – | |
Pfam | 178 | 217 | 40 | 2.1E-5 | ||
PANTHER | 184 | 534 | 351 | 0.0 | – | |
PANTHER | 184 | 534 | 351 | 0.0 | – | |
ProSitePatterns | 188 | 206 | 19 | - | ||
Gene3D | 219 | 298 | 80 | 1.5E-27 | – | |
Pfam | 247 | 286 | 40 | 5.8E-14 | ||
Pfam | 301 | 482 | 182 | 5.7E-63 | ||
Gene3D | 301 | 501 | 201 | 1.3E-66 | ||
SUPERFAMILY | 301 | 490 | 190 | 2.22E-61 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi2g1v0376100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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