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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0377300 |
| Transcript ID | LotjaGi2g1v0377300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750; TrEMBL-Plants: tr|A0A0B2SC79|A0A0B2SC79_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi2g1v0377300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87461707..87465396) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGCCTATTAAAAAATTATGGATTATATTCAAACACCCATTTTGACGAGGGTCGATATTCATTGTTCGCCTATTATAC AAAATCATAAAAGCTTAAAGATTAGTTAACCCCTTTCAATTATTTTTGACACATCATCATTTCTGGACTCACTTAGATGG AAACACGTCTGGCCCTGGAGCATGTTCTCATCTTATTCATGGGATGACACACGAGGTGAGAATCATAAAATCAAAATGAC TTCAATGAAGCATAAGCTTACAATAGGATCAATCGGAGGAAAACATGTCTTCAACAAAAACCAGCAAATTATTCATCTGG GCAAACTGGGAAAAGTTGAAGAAGCTGTAAGAGTCTTCTCAAATACAATCCACAAAAACCTTGTAACATACAATTCCATG ATATCCGTGTTTGCTAAAAACGGTAAAATCAGTGATGCCCGACAGCTGTTTGATAAAATGTCCCAGAGAAACCTTGTTTC TTGGAACACCATGATTGCTGGATACCTTCATAATAGTATGGTTGAAGAAGCCAGTAAGCTGTTTGATGTAATGCCTGAAA GAGACAATTTCTCGTGGGCTCTCATGATAACTTGCTATACTCGTAAAGGGAAGCTTGAGAAGGCGAGAGAGCTGCTCGAA TTGGTTCCGGATAAGTTGGACACTGCGTGTTGGAATGCGGTGATAGCTGGTTACGCAAAGAAGGGCCAGTTCAGTGATGC TGAGAAAGTGTTTAACTTGATGCCTGTAAAGGATTTGGTTTCTTACAACTCAATGTTAGCTGGGTATACGCAGAACGGGA AAATGGGTTTAGCATTGCACTTCTTTGAGAAGATGGCCGAGAAGAATGTAGTTTCGTGGAATTTGATGGTGTCCGGGTTT GTTAACAGTGGTGACCTGAGTTCTGCTAGGCAATTGTTTGAAAAGATTCCAAATCCGAATGCTGTTTCTTGGGTTACGAT GTTGTGTGGGTTTGCAAGACATGGAAAGATTACAGAGGCTAGGAGACTCTTTGACAGTATGCCTTGTAAGAATGTGGTTT CTTGGAATGCAATGATTGCAGCCTATGCCCAAGACTTGCAAATTGATGAAGCTGTTAAGTTGTTCATAAAAATGCCACAT AAAGATGGTGTATCATGGACTACTATAATTAATGGGTACATTAGAGTTGGTAAGCTTGATGAAGCACGGGAAGTTTACAA TCAGATGCCTTGCAAAGACATAGCAGCAGAAACAGCATTGATGTCAGGATTAATCCAGACTGGAAGGGTAGATGAGGCTA GTAAAATGTTCAATCAACTTAGTACGCGTGATACTATTTGTTGGAACAGCATGATTGCAGGCTTCTGCCAGAGTGGAAGA ATGGATGAAGCTCTCGATCTATTTAGACAAATGCCCAAAAAGAATTCTGTTTCATGGAATACTATGATTTCTGGATATGC TCAGGCAGGACAGATGGATAGTGCAGAAAATATCTTTCAGGCCATGGAGGAGAGGAATATAGTTTCCTGGAATTCTCTTA TTACAGGTTTCCTCCAAAATAGTTTATACTTCGATGCTCTCAAGAGTTTGGTTTTGATGGGGCGGGAAGGAAAGAAGCCT GATCAATCAACTTTTGCATGTTCCTTAAGTGCGTGTGCTAATCTTGCTGCTTTGCAAGTAGGCAATCAACTTCACGAGTA CATTCTGAAGAGTGGTTATATAAACGATTTATTTGTTAGCAATGCCCTGATTGCCATGTATGCAAAATGTGGAAGGGTAG AAAGCGCTGAACAAGTGTTCACTGCTATTGAATGTGTTGATCTGATTTCTTGGAATTCCTTGATTTCAGGCTATGCTTTG AATGGATATGCAATTGAGGCATTTAAAGCCTTTAAACAGATGTTATCTGAAGAGGTGGTTCCTGATCAGGTTACCTTTAT TGGGATGTTGTCAGCATGCAGTCATGCTGGTTTAGCCAATCAGGGCTTGGATTTGTTTAAATGCATGGTTGAAGATTTTG CTATTGAACCTTTAGCTGAACATTACAGCTGCCTGGTTGACTTGCTTGGCCGCATGGGTAGGTTGGAGGAAGCCTTCAAC GTAGTGAGGGGGATGGATGTGAAAGCAAATGCTGGATTGTGGGGTTCATTGCTTGGGGCTTGTCGTGTACACAAAAACCT GGAAATCGGTGAATTTGCTGCTATGAGGCTTTCAGAACTCGAACCTCATAACGCTTCCAATTATATTACCTTGTCAAACA TGCATGCTGAAGCTGGTAGGTGGGAAGAGGTTGAAAGACTAAGGGTGTTGATGAGAGATAAAAGAGCTGGAAAGCTACCT GGCTGCAGCTGGATTGAAGTACAAAATCAGATACAATGTTTTCTATCAGATGATTCGGGAAGGCTGAGACCTGAAACTAT TCAGATTATTTTGAACGCAATATCCGCACACATGAGGGACAAATTTAATGTATTTAACATGCAATCTGTTTTTGACATTT CCTGATTGGAGGTACTCACAATCTGGTCTCACCATCTTAGCTTTCAAGTTACACTGAAAAAGGTAAATACATTGTTGGAC AAATTCCTAAGTTAAATATTTGTGAAATGTTAAGGTACATGAACATGCATCAGACCGACCATAATTTGACACTCTCATGT TGTCCATGTAACCTACACATTCATGTCTGTGATATTCTTGTTGGTACAAATTTATGTGGTGGCATGACATGTAATGATAT TACACATATACCAACTCTTCTAAACCAACTACTTTCTGGTTTTACTTCACTGATTATTGATAAAAGACAGGCAAATAATC CCTGCAATGAGTTTGATTTGAGTAGGCCACAGATTTTGAGAAACTCCGAAACCAAAGTTGATTTCCCTGAAAATTTAGAT GCAGATGTTCAGCAGAGCTTTGCATTCAATCTGTGCAAGAGAATAATGGACCAAGGAGACCTGGGGACATCATTACTTAG AAGTTACTATTGGCTTCTGTTTGGGGTAATTGCATCAACGGATGGATTTTATATTGCAAAGACAATCTCTGTCATTTGGA TCCCAGGAGTAGTACGGCAGTAGCATGTGTTCCTCTTCAAGGGCATGCTGCTAAGTGTCCAATACAGTCTGCCAAAGGTT ACCTTCTTAATTTCTCTTCTCAACAACTTTAAAATGGGCTTCACTTATATTGGTGCCTATGGTTTGCATATTTAACTTGT CTTGAAAATCAAATGCAACTTCTCAAATGTTCTGTGTTTACCTTGTTAATTTCCACAGTTGTTCAAGAGTAATTTTCCAT CGCCTGTACATATCGCTTTCAATAATTTTGGAGGAAGATCAAACGAGCCCACTTCTCCCATGAGACAAATCCCCTCGACA TTCGGAGATCACATTAAGTGAGTATGTCTCTCCCAACAAATCATTATCTATACGCACTGTCCGGATCGAACCATGGGTTA GATGCTTAAGGAGCATAGCTTTCTACCCGTTGTCCTGTAATTTGTTTTTCGTACATGTGGTATTTGTACTGTACGAATAT TATAGGTTTTGATTTAATAATATATATGTAGTCTGAAAAATCTATGTAGGCTTGATTAAGAGTTTCACTTTGTGATTTTC TTTTGGTCCATCAGCATAGATTACATCATTACAAATTTGGTAAATAAAAAATGATATTTTTTATGCCTTTGGGTCGGAGA GACAGTCTGG
CDS sequence (LotjaGi2g1v0377300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCATCTTATTCATGGGATGACACACGAGGTGAGAATCATAAAATCAAAATGACTTCAATGAAGCATAAGCTTAC AATAGGATCAATCGGAGGAAAACATGTCTTCAACAAAAACCAGCAAATTATTCATCTGGGCAAACTGGGAAAAGTTGAAG AAGCTGTAAGAGTCTTCTCAAATACAATCCACAAAAACCTTGTAACATACAATTCCATGATATCCGTGTTTGCTAAAAAC GGTAAAATCAGTGATGCCCGACAGCTGTTTGATAAAATGTCCCAGAGAAACCTTGTTTCTTGGAACACCATGATTGCTGG ATACCTTCATAATAGTATGGTTGAAGAAGCCAGTAAGCTGTTTGATGTAATGCCTGAAAGAGACAATTTCTCGTGGGCTC TCATGATAACTTGCTATACTCGTAAAGGGAAGCTTGAGAAGGCGAGAGAGCTGCTCGAATTGGTTCCGGATAAGTTGGAC ACTGCGTGTTGGAATGCGGTGATAGCTGGTTACGCAAAGAAGGGCCAGTTCAGTGATGCTGAGAAAGTGTTTAACTTGAT GCCTGTAAAGGATTTGGTTTCTTACAACTCAATGTTAGCTGGGTATACGCAGAACGGGAAAATGGGTTTAGCATTGCACT TCTTTGAGAAGATGGCCGAGAAGAATGTAGTTTCGTGGAATTTGATGGTGTCCGGGTTTGTTAACAGTGGTGACCTGAGT TCTGCTAGGCAATTGTTTGAAAAGATTCCAAATCCGAATGCTGTTTCTTGGGTTACGATGTTGTGTGGGTTTGCAAGACA TGGAAAGATTACAGAGGCTAGGAGACTCTTTGACAGTATGCCTTGTAAGAATGTGGTTTCTTGGAATGCAATGATTGCAG CCTATGCCCAAGACTTGCAAATTGATGAAGCTGTTAAGTTGTTCATAAAAATGCCACATAAAGATGGTGTATCATGGACT ACTATAATTAATGGGTACATTAGAGTTGGTAAGCTTGATGAAGCACGGGAAGTTTACAATCAGATGCCTTGCAAAGACAT AGCAGCAGAAACAGCATTGATGTCAGGATTAATCCAGACTGGAAGGGTAGATGAGGCTAGTAAAATGTTCAATCAACTTA GTACGCGTGATACTATTTGTTGGAACAGCATGATTGCAGGCTTCTGCCAGAGTGGAAGAATGGATGAAGCTCTCGATCTA TTTAGACAAATGCCCAAAAAGAATTCTGTTTCATGGAATACTATGATTTCTGGATATGCTCAGGCAGGACAGATGGATAG TGCAGAAAATATCTTTCAGGCCATGGAGGAGAGGAATATAGTTTCCTGGAATTCTCTTATTACAGGTTTCCTCCAAAATA GTTTATACTTCGATGCTCTCAAGAGTTTGGTTTTGATGGGGCGGGAAGGAAAGAAGCCTGATCAATCAACTTTTGCATGT TCCTTAAGTGCGTGTGCTAATCTTGCTGCTTTGCAAGTAGGCAATCAACTTCACGAGTACATTCTGAAGAGTGGTTATAT AAACGATTTATTTGTTAGCAATGCCCTGATTGCCATGTATGCAAAATGTGGAAGGGTAGAAAGCGCTGAACAAGTGTTCA CTGCTATTGAATGTGTTGATCTGATTTCTTGGAATTCCTTGATTTCAGGCTATGCTTTGAATGGATATGCAATTGAGGCA TTTAAAGCCTTTAAACAGATGTTATCTGAAGAGGTGGTTCCTGATCAGGTTACCTTTATTGGGATGTTGTCAGCATGCAG TCATGCTGGTTTAGCCAATCAGGGCTTGGATTTGTTTAAATGCATGGTTGAAGATTTTGCTATTGAACCTTTAGCTGAAC ATTACAGCTGCCTGGTTGACTTGCTTGGCCGCATGGGTAGGTTGGAGGAAGCCTTCAACGTAGTGAGGGGGATGGATGTG AAAGCAAATGCTGGATTGTGGGGTTCATTGCTTGGGGCTTGTCGTGTACACAAAAACCTGGAAATCGGTGAATTTGCTGC TATGAGGCTTTCAGAACTCGAACCTCATAACGCTTCCAATTATATTACCTTGTCAAACATGCATGCTGAAGCTGGTAGGT GGGAAGAGGTTGAAAGACTAAGGGTGTTGATGAGAGATAAAAGAGCTGGAAAGCTACCTGGCTGCAGCTGGATTGAAGTA CAAAATCAGATACAATGTTTTCTATCAGATGATTCGGGAAGGCTGAGACCTGAAACTATTCAGATTATTTTGAACGCAAT ATCCGCACACATGAGGGACAAATTTAATGTATTTAACATGCAATCTGTTTTTGACATTTCCTGA
Protein sequence (LotjaGi2g1v0377300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSSYSWDDTRGENHKIKMTSMKHKLTIGSIGGKHVFNKNQQIIHLGKLGKVEEAVRVFSNTIHKNLVTYNSMISVFAKN GKISDARQLFDKMSQRNLVSWNTMIAGYLHNSMVEEASKLFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDKLD TACWNAVIAGYAKKGQFSDAEKVFNLMPVKDLVSYNSMLAGYTQNGKMGLALHFFEKMAEKNVVSWNLMVSGFVNSGDLS SARQLFEKIPNPNAVSWVTMLCGFARHGKITEARRLFDSMPCKNVVSWNAMIAAYAQDLQIDEAVKLFIKMPHKDGVSWT TIINGYIRVGKLDEAREVYNQMPCKDIAAETALMSGLIQTGRVDEASKMFNQLSTRDTICWNSMIAGFCQSGRMDEALDL FRQMPKKNSVSWNTMISGYAQAGQMDSAENIFQAMEERNIVSWNSLITGFLQNSLYFDALKSLVLMGREGKKPDQSTFAC SLSACANLAALQVGNQLHEYILKSGYINDLFVSNALIAMYAKCGRVESAEQVFTAIECVDLISWNSLISGYALNGYAIEA FKAFKQMLSEEVVPDQVTFIGMLSACSHAGLANQGLDLFKCMVEDFAIEPLAEHYSCLVDLLGRMGRLEEAFNVVRGMDV KANAGLWGSLLGACRVHKNLEIGEFAAMRLSELEPHNASNYITLSNMHAEAGRWEEVERLRVLMRDKRAGKLPGCSWIEV QNQIQCFLSDDSGRLRPETIQIILNAISAHMRDKFNVFNMQSVFDIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 35 | 157 | 123 | 3.4E-26 | ||
| PANTHER | 39 | 168 | 130 | 7.1E-135 | – | |
| Pfam | 64 | 94 | 31 | 7.0E-9 | ||
| ProSiteProfiles | 66 | 100 | 35 | 12.529 | ||
| TIGRFAM | 68 | 99 | 32 | 1.5E-8 | ||
| Pfam | 97 | 127 | 31 | 1.4E-7 | ||
| TIGRFAM | 99 | 128 | 30 | 4.6E-6 | ||
| ProSiteProfiles | 101 | 127 | 27 | 6.752 | ||
| ProSiteProfiles | 128 | 158 | 31 | 8.813 | ||
| Pfam | 130 | 153 | 24 | 0.0033 | ||
| Gene3D | 158 | 221 | 64 | 1.6E-9 | ||
| ProSiteProfiles | 160 | 190 | 31 | 9.876 | ||
| TIGRFAM | 163 | 192 | 30 | 9.5E-7 | ||
| Pfam | 163 | 190 | 28 | 3.1E-6 | ||
| PANTHER | 164 | 221 | 58 | 7.1E-135 | – | |
| ProSiteProfiles | 191 | 225 | 35 | 11.466 | ||
| Pfam | 193 | 223 | 31 | 1.7E-6 | ||
| TIGRFAM | 193 | 224 | 32 | 1.4E-5 | ||
| Gene3D | 222 | 283 | 62 | 5.6E-14 | ||
| PANTHER | 223 | 280 | 58 | 7.1E-135 | – | |
| Pfam | 224 | 249 | 26 | 8.3E-4 | ||
| ProSiteProfiles | 226 | 252 | 27 | 5.546 | ||
| ProSiteProfiles | 253 | 287 | 35 | 10.6 | ||
| TIGRFAM | 255 | 285 | 31 | 1.0E-5 | ||
| Pfam | 255 | 284 | 30 | 1.5E-5 | ||
| PANTHER | 265 | 347 | 83 | 7.1E-135 | – | |
| Gene3D | 284 | 347 | 64 | 1.2E-16 | ||
| TIGRFAM | 286 | 318 | 33 | 5.4E-4 | ||
| Pfam | 286 | 313 | 28 | 2.4E-6 | ||
| ProSiteProfiles | 288 | 314 | 27 | 6.062 | ||
| SUPERFAMILY | 294 | 439 | 146 | 6.83E-7 | ||
| ProSiteProfiles | 315 | 349 | 35 | 11.389 | ||
| TIGRFAM | 317 | 347 | 31 | 2.7E-7 | ||
| Pfam | 317 | 346 | 30 | 4.6E-7 | ||
| Gene3D | 348 | 407 | 60 | 2.9E-14 | ||
| PANTHER | 350 | 411 | 62 | 7.1E-135 | – | |
| Pfam | 351 | 373 | 23 | 0.032 | ||
| ProSiteProfiles | 351 | 376 | 26 | 5.294 | ||
| ProSiteProfiles | 377 | 411 | 35 | 13.0 | ||
| Pfam | 377 | 405 | 29 | 5.4E-10 | ||
| TIGRFAM | 379 | 408 | 30 | 6.8E-9 | ||
| Gene3D | 408 | 490 | 83 | 2.4E-18 | ||
| TIGRFAM | 410 | 441 | 32 | 3.8E-8 | ||
| Pfam | 410 | 440 | 31 | 3.8E-9 | ||
| ProSiteProfiles | 412 | 442 | 31 | 9.219 | ||
| PANTHER | 413 | 494 | 82 | 7.1E-135 | – | |
| Pfam | 441 | 470 | 30 | 0.023 | ||
| ProSiteProfiles | 443 | 473 | 31 | 5.799 | ||
| ProSiteProfiles | 474 | 508 | 35 | 5.831 | ||
| PANTHER | 491 | 705 | 215 | 7.1E-135 | – | |
| Gene3D | 491 | 608 | 118 | 2.9E-26 | ||
| ProSiteProfiles | 509 | 539 | 31 | 7.585 | ||
| Pfam | 514 | 533 | 20 | 0.023 | ||
| ProSiteProfiles | 540 | 574 | 35 | 11.246 | ||
| Pfam | 540 | 587 | 48 | 1.7E-8 | ||
| TIGRFAM | 542 | 575 | 34 | 1.3E-6 | ||
| ProSiteProfiles | 575 | 605 | 31 | 7.662 | ||
| ProSiteProfiles | 611 | 641 | 31 | 6.95 | ||
| Pfam | 614 | 638 | 25 | 0.054 | ||
| ProSiteProfiles | 677 | 707 | 31 | 7.103 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0377300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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