Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0377300 |
| Transcript ID | LotjaGi2g1v0377300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750; TrEMBL-Plants: tr|A0A0B2SC79|A0A0B2SC79_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi2g1v0377300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87462912..87465152) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCATAAGCTTACAATAGGATCAATCGGAGGAAAACATGTCTTCAACAAAAACCAGCAAATTATTCATCTGGGCAA ACTGGGAAAAGTTGAAGAAGCTGTAAGAGTCTTCTCAAATACAATCCACAAAAACCTTGTAACATACAATTCCATGATAT CCGTGTTTGCTAAAAACGGTAAAATCAGTGATGCCCGACAGCTGTTTGATAAAATGTCCCAGAGAAACCTTGTTTCTTGG AACACCATGATTGCTGGATACCTTCATAATAGTATGGTTGAAGAAGCCAGTAAGCTGTTTGATGTAATGCCTGAAAGAGA CAATTTCTCGTGGGCTCTCATGATAACTTGCTATACTCGTAAAGGGAAGCTTGAGAAGGCGAGAGAGCTGCTCGAATTGG TTCCGGATAAGTTGGACACTGCGTGTTGGAATGCGGTGATAGCTGGTTACGCAAAGAAGGGCCAGTTCAGTGATGCTGAG AAAGTGTTTAACTTGATGCCTGTAAAGGATTTGGTTTCTTACAACTCAATGTTAGCTGGGTATACGCAGAACGGGAAAAT GGGTTTAGCATTGCACTTCTTTGAGAAGATGGCCGAGAAGAATGTAGTTTCGTGGAATTTGATGGTGTCCGGGTTTGTTA ACAGTGGTGACCTGAGTTCTGCTAGGCAATTGTTTGAAAAGATTCCAAATCCGAATGCTGTTTCTTGGGTTACGATGTTG TGTGGGTTTGCAAGACATGGAAAGATTACAGAGGCTAGGAGACTCTTTGACAGTATGCCTTGTAAGAATGTGGTTTCTTG GAATGCAATGATTGCAGCCTATGCCCAAGACTTGCAAATTGATGAAGCTGTTAAGTTGTTCATAAAAATGCCACATAAAG ATGGTGTATCATGGACTACTATAATTAATGGGTACATTAGAGTTGGTAAGCTTGATGAAGCACGGGAAGTTTACAATCAG ATGCCTTGCAAAGACATAGCAGCAGAAACAGCATTGATGTCAGGATTAATCCAGACTGGAAGGGTAGATGAGGCTAGTAA AATGTTCAATCAACTTAGTACGCGTGATACTATTTGTTGGAACAGCATGATTGCAGGCTTCTGCCAGAGTGGAAGAATGG ATGAAGCTCTCGATCTATTTAGACAAATGCCCAAAAAGAATTCTGTTTCATGGAATACTATGATTTCTGGATATGCTCAG GCAGGACAGATGGATAGTGCAGAAAATATCTTTCAGGCCATGGAGGAGAGGAATATAGTTTCCTGGAATTCTCTTATTAC AGGTTTCCTCCAAAATAGTTTATACTTCGATGCTCTCAAGAGTTTGGTTTTGATGGGGCGGGAAGGAAAGAAGCCTGATC AATCAACTTTTGCATGTTCCTTAAGTGCGTGTGCTAATCTTGCTGCTTTGCAAGTAGGCAATCAACTTCACGAGTACATT CTGAAGAGTGGTTATATAAACGATTTATTTGTTAGCAATGCCCTGATTGCCATGTATGCAAAATGTGGAAGGGTAGAAAG CGCTGAACAAGTGTTCACTGCTATTGAATGTGTTGATCTGATTTCTTGGAATTCCTTGATTTCAGGCTATGCTTTGAATG GATATGCAATTGAGGCATTTAAAGCCTTTAAACAGATGTTATCTGAAGAGGTGGTTCCTGATCAGGTTACCTTTATTGGG ATGTTGTCAGCATGCAGTCATGCTGGTTTAGCCAATCAGGGCTTGGATTTGTTTAAATGCATGGTTGAAGATTTTGCTAT TGAACCTTTAGCTGAACATTACAGCTGCCTGGTTGACTTGCTTGGCCGCATGGGTAGGTTGGAGGAAGCCTTCAACGTAG TGAGGGGGATGGATGTGAAAGCAAATGCTGGATTGTGGGGTTCATTGCTTGGGGCTTGTCGTGTACACAAAAACCTGGAA ATCGGTGAATTTGCTGCTATGAGGCTTTCAGAACTCGAACCTCATAACGCTTCCAATTATATTACCTTGTCAAACATGCA TGCTGAAGCTGGTAGGTGGGAAGAGGTTGAAAGACTAAGGGTGTTGATGAGAGATAAAAGAGCTGGAAAGCTACCTGGCT GCAGCTGGATTGAAGTACAAAATCAGATACAATGTTTTCTATCAGATGATTCGGGAAGGCTGAGACCTGAAACTATTCAG ATTATTTTGAACGCAATATCCGCACACATGAGGGACAAATTTAATGTATTTAACATGCAATCTGTTTTTGACATTTCCTG A
CDS sequence (LotjaGi2g1v0377300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCATAAGCTTACAATAGGATCAATCGGAGGAAAACATGTCTTCAACAAAAACCAGCAAATTATTCATCTGGGCAA ACTGGGAAAAGTTGAAGAAGCTGTAAGAGTCTTCTCAAATACAATCCACAAAAACCTTGTAACATACAATTCCATGATAT CCGTGTTTGCTAAAAACGGTAAAATCAGTGATGCCCGACAGCTGTTTGATAAAATGTCCCAGAGAAACCTTGTTTCTTGG AACACCATGATTGCTGGATACCTTCATAATAGTATGGTTGAAGAAGCCAGTAAGCTGTTTGATGTAATGCCTGAAAGAGA CAATTTCTCGTGGGCTCTCATGATAACTTGCTATACTCGTAAAGGGAAGCTTGAGAAGGCGAGAGAGCTGCTCGAATTGG TTCCGGATAAGTTGGACACTGCGTGTTGGAATGCGGTGATAGCTGGTTACGCAAAGAAGGGCCAGTTCAGTGATGCTGAG AAAGTGTTTAACTTGATGCCTGTAAAGGATTTGGTTTCTTACAACTCAATGTTAGCTGGGTATACGCAGAACGGGAAAAT GGGTTTAGCATTGCACTTCTTTGAGAAGATGGCCGAGAAGAATGTAGTTTCGTGGAATTTGATGGTGTCCGGGTTTGTTA ACAGTGGTGACCTGAGTTCTGCTAGGCAATTGTTTGAAAAGATTCCAAATCCGAATGCTGTTTCTTGGGTTACGATGTTG TGTGGGTTTGCAAGACATGGAAAGATTACAGAGGCTAGGAGACTCTTTGACAGTATGCCTTGTAAGAATGTGGTTTCTTG GAATGCAATGATTGCAGCCTATGCCCAAGACTTGCAAATTGATGAAGCTGTTAAGTTGTTCATAAAAATGCCACATAAAG ATGGTGTATCATGGACTACTATAATTAATGGGTACATTAGAGTTGGTAAGCTTGATGAAGCACGGGAAGTTTACAATCAG ATGCCTTGCAAAGACATAGCAGCAGAAACAGCATTGATGTCAGGATTAATCCAGACTGGAAGGGTAGATGAGGCTAGTAA AATGTTCAATCAACTTAGTACGCGTGATACTATTTGTTGGAACAGCATGATTGCAGGCTTCTGCCAGAGTGGAAGAATGG ATGAAGCTCTCGATCTATTTAGACAAATGCCCAAAAAGAATTCTGTTTCATGGAATACTATGATTTCTGGATATGCTCAG GCAGGACAGATGGATAGTGCAGAAAATATCTTTCAGGCCATGGAGGAGAGGAATATAGTTTCCTGGAATTCTCTTATTAC AGGTTTCCTCCAAAATAGTTTATACTTCGATGCTCTCAAGAGTTTGGTTTTGATGGGGCGGGAAGGAAAGAAGCCTGATC AATCAACTTTTGCATGTTCCTTAAGTGCGTGTGCTAATCTTGCTGCTTTGCAAGTAGGCAATCAACTTCACGAGTACATT CTGAAGAGTGGTTATATAAACGATTTATTTGTTAGCAATGCCCTGATTGCCATGTATGCAAAATGTGGAAGGGTAGAAAG CGCTGAACAAGTGTTCACTGCTATTGAATGTGTTGATCTGATTTCTTGGAATTCCTTGATTTCAGGCTATGCTTTGAATG GATATGCAATTGAGGCATTTAAAGCCTTTAAACAGATGTTATCTGAAGAGGTGGTTCCTGATCAGGTTACCTTTATTGGG ATGTTGTCAGCATGCAGTCATGCTGGTTTAGCCAATCAGGGCTTGGATTTGTTTAAATGCATGGTTGAAGATTTTGCTAT TGAACCTTTAGCTGAACATTACAGCTGCCTGGTTGACTTGCTTGGCCGCATGGGTAGGTTGGAGGAAGCCTTCAACGTAG TGAGGGGGATGGATGTGAAAGCAAATGCTGGATTGTGGGGTTCATTGCTTGGGGCTTGTCGTGTACACAAAAACCTGGAA ATCGGTGAATTTGCTGCTATGAGGCTTTCAGAACTCGAACCTCATAACGCTTCCAATTATATTACCTTGTCAAACATGCA TGCTGAAGCTGGTAGGTGGGAAGAGGTTGAAAGACTAAGGGTGTTGATGAGAGATAAAAGAGCTGGAAAGCTACCTGGCT GCAGCTGGATTGAAGTACAAAATCAGATACAATGTTTTCTATCAGATGATTCGGGAAGGCTGAGACCTGAAACTATTCAG ATTATTTTGAACGCAATATCCGCACACATGAGGGACAAATTTAATGTATTTAACATGCAATCTGTTTTTGACATTTCCTG A
Protein sequence (LotjaGi2g1v0377300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKHKLTIGSIGGKHVFNKNQQIIHLGKLGKVEEAVRVFSNTIHKNLVTYNSMISVFAKNGKISDARQLFDKMSQRNLVSW NTMIAGYLHNSMVEEASKLFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTACWNAVIAGYAKKGQFSDAE KVFNLMPVKDLVSYNSMLAGYTQNGKMGLALHFFEKMAEKNVVSWNLMVSGFVNSGDLSSARQLFEKIPNPNAVSWVTML CGFARHGKITEARRLFDSMPCKNVVSWNAMIAAYAQDLQIDEAVKLFIKMPHKDGVSWTTIINGYIRVGKLDEAREVYNQ MPCKDIAAETALMSGLIQTGRVDEASKMFNQLSTRDTICWNSMIAGFCQSGRMDEALDLFRQMPKKNSVSWNTMISGYAQ AGQMDSAENIFQAMEERNIVSWNSLITGFLQNSLYFDALKSLVLMGREGKKPDQSTFACSLSACANLAALQVGNQLHEYI LKSGYINDLFVSNALIAMYAKCGRVESAEQVFTAIECVDLISWNSLISGYALNGYAIEAFKAFKQMLSEEVVPDQVTFIG MLSACSHAGLANQGLDLFKCMVEDFAIEPLAEHYSCLVDLLGRMGRLEEAFNVVRGMDVKANAGLWGSLLGACRVHKNLE IGEFAAMRLSELEPHNASNYITLSNMHAEAGRWEEVERLRVLMRDKRAGKLPGCSWIEVQNQIQCFLSDDSGRLRPETIQ IILNAISAHMRDKFNVFNMQSVFDIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 136 | 124 | 2.8E-26 | ||
| PANTHER | 20 | 147 | 128 | 1.3E-134 | – | |
| Pfam | 43 | 73 | 31 | 6.8E-9 | ||
| ProSiteProfiles | 45 | 79 | 35 | 12.529 | ||
| TIGRFAM | 47 | 78 | 32 | 1.5E-8 | ||
| Pfam | 76 | 106 | 31 | 1.4E-7 | ||
| TIGRFAM | 78 | 107 | 30 | 4.4E-6 | ||
| ProSiteProfiles | 80 | 106 | 27 | 6.752 | ||
| ProSiteProfiles | 107 | 137 | 31 | 8.813 | ||
| Pfam | 109 | 132 | 24 | 0.0032 | ||
| Gene3D | 137 | 199 | 63 | 1.5E-9 | ||
| ProSiteProfiles | 139 | 169 | 31 | 9.876 | ||
| Pfam | 142 | 169 | 28 | 3.0E-6 | ||
| PANTHER | 142 | 197 | 56 | 1.3E-134 | – | |
| TIGRFAM | 142 | 171 | 30 | 9.1E-7 | ||
| ProSiteProfiles | 170 | 204 | 35 | 11.466 | ||
| TIGRFAM | 172 | 203 | 32 | 1.4E-5 | ||
| Pfam | 172 | 202 | 31 | 1.6E-6 | ||
| Gene3D | 200 | 262 | 63 | 2.8E-14 | ||
| PANTHER | 202 | 259 | 58 | 1.3E-134 | – | |
| Pfam | 203 | 228 | 26 | 8.0E-4 | ||
| ProSiteProfiles | 205 | 231 | 27 | 5.546 | ||
| ProSiteProfiles | 232 | 266 | 35 | 10.6 | ||
| Pfam | 234 | 263 | 30 | 1.5E-5 | ||
| TIGRFAM | 234 | 264 | 31 | 1.0E-5 | ||
| PANTHER | 244 | 325 | 82 | 1.3E-134 | – | |
| Gene3D | 263 | 326 | 64 | 1.2E-16 | ||
| TIGRFAM | 265 | 297 | 33 | 5.2E-4 | ||
| Pfam | 265 | 292 | 28 | 2.3E-6 | ||
| ProSiteProfiles | 267 | 293 | 27 | 6.062 | ||
| SUPERFAMILY | 288 | 675 | 388 | 5.88E-7 | ||
| ProSiteProfiles | 294 | 328 | 35 | 11.389 | ||
| TIGRFAM | 296 | 326 | 31 | 2.6E-7 | ||
| Pfam | 296 | 325 | 30 | 4.5E-7 | ||
| Gene3D | 327 | 386 | 60 | 2.7E-14 | ||
| PANTHER | 329 | 390 | 62 | 1.3E-134 | – | |
| ProSiteProfiles | 330 | 355 | 26 | 5.294 | ||
| Pfam | 330 | 352 | 23 | 0.031 | ||
| Pfam | 356 | 384 | 29 | 5.2E-10 | ||
| ProSiteProfiles | 356 | 390 | 35 | 13.0 | ||
| TIGRFAM | 358 | 387 | 30 | 6.6E-9 | ||
| Gene3D | 387 | 475 | 89 | 2.1E-19 | ||
| TIGRFAM | 389 | 420 | 32 | 3.7E-8 | ||
| Pfam | 389 | 419 | 31 | 3.7E-9 | ||
| ProSiteProfiles | 391 | 421 | 31 | 9.219 | ||
| PANTHER | 392 | 473 | 82 | 1.3E-134 | – | |
| Pfam | 420 | 449 | 30 | 0.022 | ||
| ProSiteProfiles | 422 | 452 | 31 | 5.799 | ||
| ProSiteProfiles | 453 | 487 | 35 | 5.831 | ||
| PANTHER | 470 | 684 | 215 | 1.3E-134 | – | |
| Gene3D | 476 | 550 | 75 | 1.3E-6 | ||
| ProSiteProfiles | 488 | 518 | 31 | 7.585 | ||
| Pfam | 493 | 512 | 20 | 0.022 | ||
| ProSiteProfiles | 519 | 553 | 35 | 11.246 | ||
| Pfam | 519 | 566 | 48 | 1.6E-8 | ||
| TIGRFAM | 521 | 554 | 34 | 1.3E-6 | ||
| ProSiteProfiles | 554 | 584 | 31 | 7.662 | ||
| Gene3D | 561 | 711 | 151 | 2.7E-16 | ||
| ProSiteProfiles | 590 | 620 | 31 | 6.95 | ||
| Pfam | 593 | 617 | 25 | 0.052 | ||
| ProSiteProfiles | 656 | 686 | 31 | 7.103 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0377300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…