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IPR038120 is a RNA polymerase Rpb1, funnel domain superfamily.
<p>RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This entry represents the funnel domain. The funnel domain contains the binding site for some elongation factors [[cite:PUB00002975], [cite:PUB00008731]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | DNA-directed RNA polymerase subunit; TAIR: AT5G60040.1 nuclear RNA polymerase C1; Swiss-Prot: sp|F4JXF9|NRPC1_ARATH DNA-directed RNA polymerase III subunit 1; TrEMBL-Plants: tr|I1LK95|I1LK95_SOYBN DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi1g1v0634400 | 29 | ||
– | DNA-directed RNA polymerase subunit beta''; TAIR: ATCG00170.1 DNA-directed RNA polymerase family protein (ChrC); Swiss-Prot: sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|A0A023IN53|A0A023IN53_LENCU RNA polymerase beta' subunit; Found in the gene: LotjaGi1g1v0660200_LC | 9 | ||
– | DNA-directed RNA polymerase subunit beta''; TAIR: ATCG00170.1 DNA-directed RNA polymerase family protein (ChrC); Swiss-Prot: sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|A0A0K0LU53|A0A0K0LU53_9FABA DNA-directed RNA polymerase subunit beta''; Found in the gene: LotjaGi1g1v0660200_LC | 9 | ||
– | DNA-directed RNA polymerase subunit beta''; TAIR: ATCG00170.1 DNA-directed RNA polymerase family protein (ChrC); Swiss-Prot: sp|Q9BBS7|RPOC2_LOTJA DNA-directed RNA polymerase subunit beta''; TrEMBL-Plants: tr|A0A0K0LU53|A0A0K0LU53_9FABA DNA-directed RNA polymerase subunit beta''; Found in the gene: LotjaGi1g1v0660200_LC | 7 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT4G35800.1 RNA polymerase II large subunit; Swiss-Prot: sp|P18616|NRPB1_ARATH DNA-directed RNA polymerase II subunit 1; TrEMBL-Plants: tr|V7CLS7|V7CLS7_PHAVU DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0377500 | 38 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 | 19 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 | 24 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 | 24 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT1G63020.1 nuclear RNA polymerase D1A; Swiss-Prot: sp|Q9LQ02|NRPD1_ARATH DNA-directed RNA polymerase IV subunit 1; TrEMBL-Plants: tr|G7KER5|G7KER5_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi2g1v0430800 | 19 | ||
– | DNA-directed RNA polymerase subunit; TAIR: AT3G57660.1 nuclear RNA polymerase A1; Swiss-Prot: sp|Q9SVY0|NRPA1_ARATH DNA-directed RNA polymerase I subunit 1; TrEMBL-Plants: tr|A0A151QTE2|A0A151QTE2_CAJCA DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi5g1v0147900 | 28 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 7.14 |