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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0378100 |
| Transcript ID | LotjaGi2g1v0378100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G35840.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1; TrEMBL-Plants: tr|I3S719|I3S719_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0378100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87519216..87522771) extracted from Lotus japonicus Gifu genome v1.2.
ATAATTATCAGTTTTATTTTGTTGATAACAGAAGAAAATTAGCGGCATCGATAGAGGTCAGGTCACACAACCGAGCTTTA AATGCGAGTTGGTTGATGGTAGTTTCCTTCTTTCTTTCTTTATTTATTCTTATTCTTATATATTAAGCTTTCTATTTTTC TTTATAGCGCGTCTTTTCTATTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATATTAAAGTTT TAATTTAATTTTGTCAATCAATATAAATATAAATAACGTGTTGTTCTTGTTCTTAAACCCAAATCTCGTGACAACAAAAC CGTACCCGCAAAAACATCATCAATCATCGTTTTTGCATGATTCGATTCCCAATTGGCTTTTGTTGTTGTCGCAATTTCTC TCATGGATTTTCTCCCAAATCCAAGCCCTTCTCGTCCATCGTTGTTCGGTTCCTTCGGAAATCTCGTTGACAAGGTTAAA CAGATTTGTAATCTCGCAATCTCTGCCATTATTGGTAACATCTTGTCCGCAATCTTGACCTTCTGCTTCGCATTAGGTTC GATTCGATTCCCATTTCCATTTCTCTTCCAAATTCTTGATCTATTTCTATGTTATCATGATTTTGCCTCTTTTTTGTGAA TTTGCTATAATTGAGGGGGTTTTGTTTGAGATTGTTATGCTGTTTGTTGATTGGTTTGTTCTGATTGGTGCTGTTGTCTT GTTTGATTTTTCTATTCATTGGTGTTTTGTACATTGAGATGTTTTATGCATGTGAATTTTTGAAGGTGAGCTAGCTCTAA TGGCTGTTTTTGTTTTGTCTGCAGTTGGCACTTTGTTGGGGGCTATGACAGGGGCTTTGATAGGTCAAGAGACTGAGAGT GGCTTCATTCGAGGGGCTGCTGTTGGTGCTATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCT TTGGCATTCTGATGAATCTGGGATTGGGTGTCTCTTATACTTGGTGAGTGGTGAGCCTTGTCAAAATGGGATCTCTGGTT TGGTTTGGATTTGGAAGCTGAAAAGCTTATGTAGTAGCCAGTTGATTACAGAGTTGCCGTTAGAAAGTACGAAAACAAAA ACAGTTCGACAAAAAGTTGTACATCGATATGTGTCATTTCCCTTGTTTTCGTACTTTCTAACGGAAAACCAAACAGACTA TTTATGATTTACAATGGCATGTTGTTGTGTAGCCTGATTTCTTTGTGTTATATGCAGATTGATGTTATTGGTAGCTTACT GAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCAGTTCAAAGTCAGGTAATTCACTTATAGCGTG TTTGGATCAGCTTCTCTTTTGTTAAAATTAATTCTAGCACTTAAAGCTACTTACGGTAGTTTTTTCCCTATGATTGATTC AGGCGACAAAATCAATCATGGGGAAAAAATAATCAAGTAGCTTTGCTGAGGTAATTGACTGTAATAAGTCCTTTGTCCTA TCAGCTTCAAATTTGGTTGTACATTCTCTCACATTGCTGACACCTCTGCTCTTCCTTATCAGATGGGTGCTGTTGAAACT GGCTTTGATGAGGTTCAGAACATCTTTGACACCGGCTGCGGCGGTGCAAAAGGTTTATCAGGAGATTCAGTAGAAAAAAT CCCAAAAATCAAAATTACTACTGACAACAATGCTGATGCATCTGGTGAAAGAGTTTCCTGTTCAGTTTGCCTCCAGGTTG GTCTTTAGCTTTTTGCAGTTTCTGTGGTTGTTAGCAATGGTTTACCTGTACCTTGAGCAGAGTGCTATTAAGCTTGTGTT TATTGGTATTGACATTGACATTTCTGAATTTGTGCTTATGCAGGACTTTCAGCTGGGAGAGACTGTTAGAAGCTTACCTC ATTGTCATCACATGTTTCACCTACCCTGCATAGACAAGTGGCTCTTCAGGCATGGCTCTTGCCCATTATGTAGAAGGGAT CTCTAATTTTGTATGTGCATAGTTCAGTAAAAAAAGTTCATCTTTTTCTGTTTTGTTTATAAGCTTATTTGATTTTAGGA CTTACTCTTGAATATCTAATCTAGTGAGAGCCAACCGACGCACTTATGTGGTATCATTAATCATTGTACTAAATTAGTGT AAAGAAATTTTGAGATGAAACAGTTTCCACTTATTGTATATGAATGAGTAGATGACCCTTTTTCTAGCTAGTCATCACTT CTTTCTGTTCTATTTTATCTATATTTTCCAGAACAAAGATCATGCGACTGTAATCTAGCTGTAGTGACTTATAATTTTTA TCTTTTAAAGGTTAAGAAGTCTCACTTTTTTGTCTGTTTTCTGAACCTGTGGTCTTGGTGCAAATGATAGGTTCCCTCAC ATTTCAGCTTGATCTTTCAGTTAATTATATATTTAGTCAAACATTGTTTTTGATTGAGAGATTATGTACATTATGAAATT GGCATCATGAATCACATTTATATATTGTTTGTTTTTTCACTTAAACTTCGCAAGCTACTCATAGCACTCATGGACTAGCA TCGGTGGTTGTAATTTAACTCCTATAAACCCTTGGTTTAAGAGCATCTTTAGTTTTTTGTTTAAATCATAGTAGTAAAAA ATTGTTGTTAGAAAAAGGTAAAGTAAAACCAATGATGCAAAGTGTGGTCCAAATCCAAAAGTGCTTATTCATTGAAACAA TAAATTAGACAAAGTACTGCAACATACATTAACATTACATGCATATAAACACATATATTATTGAGTTGCTGTCTTTATGT TTGGCCTTTTCTGTCCTCTTTAAAATAGAACTGGTTTTGTTTTGAGATGATTTATGATTCATCCAACCTTAAGCAGTTTG TTAACGAAGTTACTGTGATGGGTGAATAGGAAACATTCAATTTATTGTGATTCAAACTTTTGTAGAGTTCAGATGGTAGG CCGCACATGCAGAGAAGTGTAATGTACTAGTAGAAATATCATATCGTCCTTACAAGTCACCAACTCTAACAATGTTGCAA TTATCCTTTCATCTGCCACATTAAATGTTGTTCTTTTACAGTAGACACATGGGGGCTTTTCACATTCCAATTCCGGATTC TGGATTTTAGTTAAAGTTAAGACTATTCACCCCCTCTCCAAGTGTATTGTTCGGAGAATAAACTTAAGAACTCTTCCCGC ACATTCGATCCGTGTTATGAACTGAGCTACTCCAATATGATTTTTTTTTTAAATATTGCGAATTTAAAAACATGTTAGAC ATTAATATTTTCTTATTTCTTTCATCTGATATCCATACTTAGTTTTTTTATCTGTCACTTTATCCCTATTTCTTAGCTTT TCCTTTATCTATCATGAATCTATTATTGCCTAAACTATTCAAAACAGAACTATCAGTCACTTTCTAGAACCCCCTTCATA TGGCCCAAATCTAGCAAAAATGTATGGAAACTCCAATCCCAATCACCAAGTCCATGTTAAGAACCACATTGAAGACCCTC AAAATCGATTTCATGTTGTTCAAATTTGGTTTACAC
CDS sequence (LotjaGi2g1v0378100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTTCTCCCAAATCCAAGCCCTTCTCGTCCATCGTTGTTCGGTTCCTTCGGAAATCTCGTTGACAAGGTTAAACA GATTTGTAATCTCGCAATCTCTGCCATTATTGGTAACATCTTGTCCGCAATCTTGACCTTCTGCTTCGCATTAGTTGGCA CTTTGTTGGGGGCTATGACAGGGGCTTTGATAGGTCAAGAGACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCT ATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGGTG TCTCTTATACTTGATTGATGTTATTGGTAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGA GTGCAGTTCAAAGTCAGATGGGTGCTGTTGAAACTGGCTTTGATGAGGTTCAGAACATCTTTGACACCGGCTGCGGCGGT GCAAAAGGTTTATCAGGAGATTCAGTAGAAAAAATCCCAAAAATCAAAATTACTACTGACAACAATGCTGATGCATCTGG TGAAAGAGTTTCCTGTTCAGTTTGCCTCCAGGACTTTCAGCTGGGAGAGACTGTTAGAAGCTTACCTCATTGTCATCACA TGTTTCACCTACCCTGCATAGACAAGTGGCTCTTCAGGCATGGCTCTTGCCCATTATGTAGAAGGGATCTCTAA
Protein sequence (LotjaGi2g1v0378100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFLPNPSPSRPSLFGSFGNLVDKVKQICNLAISAIIGNILSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGA ISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIGSLLSGRLVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGCGG AKGLSGDSVEKIPKIKITTDNNADASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| PANTHER | 19 | 237 | 219 | 2.8E-121 | – | |
| PANTHER | 19 | 237 | 219 | 2.8E-121 | – | |
| Phobius | 31 | 59 | 29 | - | – | |
| TMHMM | 35 | 57 | 23 | - | – | |
| Phobius | 60 | 70 | 11 | - | – | |
| TMHMM | 70 | 92 | 23 | - | – | |
| Phobius | 71 | 91 | 21 | - | – | |
| Phobius | 92 | 102 | 11 | - | – | |
| TMHMM | 102 | 124 | 23 | - | – | |
| Phobius | 103 | 124 | 22 | - | – | |
| Phobius | 125 | 237 | 113 | - | – | |
| Gene3D | 155 | 237 | 83 | 8.9E-22 | ||
| SUPERFAMILY | 191 | 237 | 47 | 5.3E-20 | – | |
| Pfam | 191 | 234 | 44 | 2.7E-11 | ||
| ProSiteProfiles | 192 | 234 | 43 | 11.958 | ||
| SMART | 192 | 233 | 42 | 2.6E-6 | ||
| CDD | 192 | 234 | 43 | 3.0417E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0378100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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