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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0378900 |
| Transcript ID | LotjaGi2g1v0378900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G51325.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q8BI21|RNF38_MOUSE E3 ubiquitin-protein ligase RNF38; TrEMBL-Plants: tr|I3T8R6|I3T8R6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0378900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87573433..87574308) extracted from Lotus japonicus Gifu genome v1.2.
GGTATCTATCTAGGTCAAGGGTAACACTCTGTGTTGGTGTAACCGCTTTTGTGTTTGGACGCTAGAAACTTTCACACAAA CCTCATCTAACCAATCTTTCAAACCAAGCAAAACAACCAACCATGACTAAATAAGAACCGTAACTGTGACAAATGAGTCA CATTAGTTGCATCTCTACTTCATATCAAGGGTCTAATAGAGAGAAGCATGCCCCTCATCGAATCAAATGTCTCTCAAAGG CTTGGTATCACTTGTCTTCGACTTAGTGGGTCTAGCAGAAGTACCAAGGAACAATAATGATGCATCCAATTTCATGGAGA AGAGTGGGGGACATGGTTGGTGTTGCGTGTGCTTGTCGAGGCTAAAAGACAGAGATGAAATCCGAGTCCTTCCTTGCTTG CACGAGTTCCATAAGATTTGTGTGAACAGATGGCTTAAGGGTCATCACAAAACATGTCCATTGTGTCGTTTCTCAATGGG CGCTGCTGAGGAGAAGTCTCATCGTGCTGAAATGTTCACTGATGAGATGGTAATTTGGTTTTCTTCTTTCCATATAGCTG GTATGTAAATGTAATGATCTCCATTTCACCACACCAGAACCTTGCTTGCTTTGCTTTTGAGTTTTTGTTGTTGCTGCAAG GCTCATGTATCTGATTCTAAGCAAGCCTAAACGAATTGTGCTTGTCTATATATCAAAGTTTAATATTGCACCCTCACCCA TTTAAAGAAAATGTAACAACAAAAAAATGACATGATCATAACTTTCACTTCCACAACATCTGAGTACGATTCAATGTCTA GTTTTTCATCTTTCATTACTTTATCCTCGTTAGGTGAATCTTTTCAGCCCCTAAACTCCCATGAGCTAGTAAGTGC
CDS sequence (LotjaGi2g1v0378900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCTCAAAGGCTTGGTATCACTTGTCTTCGACTTAGTGGGTCTAGCAGAAGTACCAAGGAACAATAATGATGCATC CAATTTCATGGAGAAGAGTGGGGGACATGGTTGGTGTTGCGTGTGCTTGTCGAGGCTAAAAGACAGAGATGAAATCCGAG TCCTTCCTTGCTTGCACGAGTTCCATAAGATTTGTGTGAACAGATGGCTTAAGGGTCATCACAAAACATGTCCATTGTGT CGTTTCTCAATGGGCGCTGCTGAGGAGAAGTCTCATCGTGCTGAAATGTTCACTGATGAGATGGTAATTTGGTTTTCTTC TTTCCATATAGCTGGTATGTAA
Protein sequence (LotjaGi2g1v0378900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLKGLVSLVFDLVGLAEVPRNNNDASNFMEKSGGHGWCCVCLSRLKDRDEIRVLPCLHEFHKICVNRWLKGHHKTCPLC RFSMGAAEEKSHRAEMFTDEMVIWFSSFHIAGM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 13 | 9 | - | – | |
| Phobius | 14 | 17 | 4 | - | – | |
| Gene3D | 16 | 91 | 76 | 2.5E-17 | ||
| Phobius | 18 | 113 | 96 | - | – | |
| PANTHER | 26 | 84 | 59 | 1.4E-22 | – | |
| PANTHER | 26 | 84 | 59 | 1.4E-22 | – | |
| SUPERFAMILY | 38 | 85 | 48 | 3.53E-18 | – | |
| ProSiteProfiles | 39 | 81 | 43 | 12.666 | ||
| SMART | 39 | 80 | 42 | 5.3E-7 | ||
| Pfam | 39 | 81 | 43 | 3.9E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0378900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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