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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0380200 |
| Transcript ID | LotjaGi2g1v0380200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit 4; TAIR: AT4G38630.1 regulatory particle non-ATPase 10; Swiss-Prot: sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 homolog; TrEMBL-Plants: tr|I3RZP6|I3RZP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0380200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87683086..87687438) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGCTCGAGGTAAACCCTGATTTTCCCCACTCCATGATTTCAATTTCCCAATTGTTAGGGTTTTCTTTTCTTCTCAA TTTTCACTGAATCGCTTACTTCAACAGGCGACAATGATCTGTATTGACAATTCTGAATGGATGCGTAACGGAGATTACAA TCCCTCTCGATTTCAAGCTCAAGCAGACGCTGTCAATCTCATTTGCGGTGCCAAAACACAGGTTATGCTCTAGCTTCAAA ATCTGAGCCCTAGATAATTGCATAGATAGGGTTTACTTGTTCTGATGAATGTGTTTTGGTTTGAATTGAATGATACAGTC TAATCCGGAAAATACAGTGGGAGTTCTCACAATGGCAGGGAAAGGTGTTCGTGTTTTGGTCACCCCTACCAGCGATCTGG GCAAGATCTTAGCCTGCATGCATGGTCCGTTTTTATTTTTTTCATTACTGATTTTCTTTTTCAATTTCTTGATGCTGTAA ACTTTTGAATGATATCTTTTTTTTTCCACTTTTTATATTCCTAATTTTAGGACTAGAGATTGGTGGTGAGATGAACCTTG CTGCCGGCATTCAAGTTGCGCAGTTGGCTCTTAAGCATCGGCAAAATAAAAAGCAGCAGCAACGGATTGTTGTTTTTGCT GGAAGGTATGCTTAACTATATTCTGTGCTTCGTTGGAAATGTCTTGTTTGTGGTTGTTCTGTGTTAACTGTCTCGATCGT CGTTTTATAGTCCTGTTAAGCATGAAAAGAAAATGCTGGAGATGATAGGGAGGAAGCTGAAAAAGAATAGTGTAGCACTT GATATTATTAATTTTGGTGAAGAAGATGAGGGGAAGACGGAGAAGCTGGAAGCTCTTCTTGCGGCTGTTAACAATAATGA TAGCAGCCACATTGTTTCTGTTCCACCTGGTCCAAATGCTCTTTCTGATGTACTGATAAGGTATGTGGGTTCAATTTCAT CTTGTACTTTTTCTGTCTAATCTCTTGTTTGTGATCTAGCTTTTGGATATTTATTTGATAATGTGCTGTGACAGTACACC TATATTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCCGCTGCTGCTGCCGCAGCTGCAGCTGGTGGTGTATCTGGAT ATGAGTTTGGTGTTGATCCAAACTTGGATCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGGGCCAGG CAGGAAGCAGCAGCCAAGAAGGCTGCAGAGGAGGCGGCCAACCAAGAGAAAGGAGGTGAAACCAGCTCCCAAGATGCAAC AATGACTGAACGTGCCAGTGCAGCCACTTCTGAAGCTGAGAATAAAACAATTGATTTAATGGTTGGTGCTTTTGTTGCAT TTATGATCTGTCTCTGTGTTGCATGTTTTTGTCCGTGCTTTACTGAGAATATAATCACTAAATGCGTATAATAGCTTATA AGACTAGTTTCAGAATTTATATTAATTTTTTAGTAGTTAAATTACAAAGGCGTATGAACTTGAAACTTCTCAAGGAAGAC AGTGGGTCCTTAATTTTCTCGGAAGGTTACTCATTTTAATGGAGGTAGAATTGAAATGTTAGAAACTTACAAAAATAGGT GAGGACTGCCGTTCGGTACAATCTGGACAGAACTCTTACCATTATTTATTATCTTTCTGTACTGTAGTGCTAGAACTGAA TTGATCGTAACCTATCCATACAATGATGTTAGTATCTGAAATGGAATAATCTCTATCTTCTGTATAGCTTCATCAATTTG ACATTTTATTTTCATTTTTTTGCTTTATATCTCAATATCTCAATGATCAGTTTATCCCTACTTTTACTCTCATCAGCACT AATGGATCACCATGCTAATTATTTCCAGTTTACCATTCCTGGAGCTAAAACATGTTTACCCAAATTTTCACACTAAACAC CATCATAATGGCATTGTGCGCTAGTTACTTTGATCCCTGTTGTCACCGCATAATATATCTGTGCTGTTATACTCATTACT AACTTTGAACCATATACTCTTATCTTCCAGCCAAATCAAAATAATATATAAAGCTATATTTTTCCATTTACTATAACTAA GGTCTGCATTTGAGCCCTTGTGTGTTCTAAGAGTCAGTGTTTGTGATGCATGCTTTTTGTAGATTATGTAATCTTGGTTG CAGAGTAGAAAGAAGAAATTAAATGAAGTTAGAGCTATGGAGACAATCTTTTGAAAGCACATCAGTTTTAGTGAAGTAGA GGAAAACTATGTGGAATGACACTTTTGCCAGAGAGATATTAATTCTAGATTAGATGTGAGAATCGGAGCACATTCCATAT CACAAGTCCTACAATTTCAGTATCTTTGGTCGGTTATAGAAAATGATAGGGAATAATAGGCAATGAATAGAGATAGGGAA TGCTTTGGTGTAGTTTATGATAGACAATCACGTAGAAGCTTAGGGGAAATTATACCGCACAAGTATATGATGTGTGATTT TGTAATATTAGGTGGTAAATAGCCAAAACATACAGTAAGATTAATACCTACATAAAAGAGAATGTTACTAGGATGCGTCA TGCGTGTCACACAAGACGAGATAGAATGATAAATGAAAGCATTGGAGGGAATGTTAAGATAGCAGCTACGGTAAAATAGA TTGTAGATCTCATCTCACTTTAGGTTGGTTTGGACATGTGCTAAGAAGAATTGTAGTGCCAATTCTGAGGGCAGATCAGA TAGAGGATAGTCCAATAGTTAGAATAAAAGCATAAGGAGACCAAAGAAAATTATTAATTGAACTATTAAAAAAGAGTTGG GGTTAAATTATCTATCAATGGACATGATTCATTATAGGACATTACGGTGTATTTGATCCATGTATCTGAACCCAACTAGT GAGAAAAAGGCTTTGACTATTGTTGTTGTTTTTCTATGAGAGGCATCTATAGTTATGTGTATCCAGGATGTTTGGAAATT GTTACTTCAACAACATTTTACTGTTGTAAGTTCAATGCAACATCAATATCTCTTTGCTTACCAGAAGTGGTATGCATTGC ATTATTTCATTATATTTATGACCAAAAACTTTTGCTTCTTTGTGCATTGCTTTTGAATTAGTTCTCATGTTTTATTTTAT GCTTTCTATAAATTGACTTCAACCGTAATAGTTCTGCTGTTTGTACTAACCTTCAAATGGAACAGGATGATGAGAATGCC CTACTCCAGCAGGCACTTGCAATGTCAATGGATGACCCTGTGAGTAGCCATGATGTAAAAGATACGGATATGTCAGAAGC ACCTGCAGATGACCCTGATTTGGCACTAGGTGAACTTTTGTTGTTTATGCATTCTGGCATGGACTTGGGACACGACATAG TCATAGAGACGGCAATATGGAACAATTTAGATAGGTGCTCCATTAGGCACTTAAGTGTCACATGGTGTCTGATATGTCTC CAACGTGAAAACATGGATGCAACTCCTTTTCTATGTGTCTAATTATGCTTCACAGTTCCTCCATCAAACATGGTTGAGTT TTTGCAAGTGTTTCTACATCTAGTATCAATGGGAAGTGCTTTGTTTATAGTCATATTTTTTTAATGTTTGAACTGAGTTA TGGAGTTGAAGAGACTTAATAAACTTTTTAAAATTCAGTATGGTGCAGGGGATTTCTTCATCTGTTTGCATTTAATAAAC TAGAGTGTTCTTATTTCTTTTGTTTTGAAGGAATGATTTCAATGGGTAGGTATTTGCTAGTATACATTCACATATTTTTC AGCTAACTCCTTCTTTTGAGGATTTGGTTTAGTAAAAGGGTAGTCTGAATATGGGGTTCTATTAACTTGCATTTTCTTAG AATTTCTAAAACACAGTAAACCCATGGTGCTTGTTATAATGTTTTATTGGTTTCTGGTCATATTGCTTGCAGCTCTCCAA TTGTCAGTAGCAGATGGCACAAAGGATTCAGGAAGCCAGTCGTCAGACATGAGTAAATTGTTGGCAGATCAATCTTTTGT ATCTTCTATCCTTGCATCGGTATGTCTGAAAAGTCCTGTAATTATCTGTGTTGTTTGTTTAACATAATAGCTTGATGTGC TATATTGCTTCTGCAGCTTCCAGGGGTTGACCCAAATGACCCTTCTGTCAAAGATTTACTGGCCTCCATGCAAAATCAAT CTGAGGTGAGTCTTTCTAAGGAAAAGTGTACATTGGATTTGAAATGAATTTTGTAGAAAATTTGAGCACAGACATAATTA GATTACTTGGCCTATTTTTCCCCTTTCCTTTTTGACTTATTTTGGAGGGTTGATATTGTACTTGAAGGACAAGAACAAGA CAGTTCCTGGCTCCTGCTGCTAGCATATTTTAA
CDS sequence (LotjaGi2g1v0380200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTCGAGGCGACAATGATCTGTATTGACAATTCTGAATGGATGCGTAACGGAGATTACAATCCCTCTCGATTTCA AGCTCAAGCAGACGCTGTCAATCTCATTTGCGGTGCCAAAACACAGTCTAATCCGGAAAATACAGTGGGAGTTCTCACAA TGGCAGGGAAAGGTGTTCGTGTTTTGGTCACCCCTACCAGCGATCTGGGCAAGATCTTAGCCTGCATGCATGGACTAGAG ATTGGTGGTGAGATGAACCTTGCTGCCGGCATTCAAGTTGCGCAGTTGGCTCTTAAGCATCGGCAAAATAAAAAGCAGCA GCAACGGATTGTTGTTTTTGCTGGAAGTCCTGTTAAGCATGAAAAGAAAATGCTGGAGATGATAGGGAGGAAGCTGAAAA AGAATAGTGTAGCACTTGATATTATTAATTTTGGTGAAGAAGATGAGGGGAAGACGGAGAAGCTGGAAGCTCTTCTTGCG GCTGTTAACAATAATGATAGCAGCCACATTGTTTCTGTTCCACCTGGTCCAAATGCTCTTTCTGATGTACTGATAAGTAC ACCTATATTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCCGCTGCTGCTGCCGCAGCTGCAGCTGGTGGTGTATCTG GATATGAGTTTGGTGTTGATCCAAACTTGGATCCTGAATTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAGGAGAGGGCC AGGCAGGAAGCAGCAGCCAAGAAGGCTGCAGAGGAGGCGGCCAACCAAGAGAAAGGAGGTGAAACCAGCTCCCAAGATGC AACAATGACTGAACGTGCCAGTGCAGCCACTTCTGAAGCTGAGAATAAAACAATTGATTTAATGGATGATGAGAATGCCC TACTCCAGCAGGCACTTGCAATGTCAATGGATGACCCTGTGAGTAGCCATGATGTAAAAGATACGGATATGTCAGAAGCA CCTGCAGATGACCCTGATTTGGCACTAGCTCTCCAATTGTCAGTAGCAGATGGCACAAAGGATTCAGGAAGCCAGTCGTC AGACATGAGTAAATTGTTGGCAGATCAATCTTTTGTATCTTCTATCCTTGCATCGCTTCCAGGGGTTGACCCAAATGACC CTTCTGTCAAAGATTTACTGGCCTCCATGCAAAATCAATCTGAGTTGAAGGACAAGAACAAGACAGTTCCTGGCTCCTGC TGCTAG
Protein sequence (LotjaGi2g1v0380200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLEATMICIDNSEWMRNGDYNPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLE IGGEMNLAAGIQVAQLALKHRQNKKQQQRIVVFAGSPVKHEKKMLEMIGRKLKKNSVALDIINFGEEDEGKTEKLEALLA AVNNNDSSHIVSVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYEFGVDPNLDPELALALRVSMEEERA RQEAAAKKAAEEAANQEKGGETSSQDATMTERASAATSEAENKTIDLMDDENALLQQALAMSMDDPVSSHDVKDTDMSEA PADDPDLALALQLSVADGTKDSGSQSSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSELKDKNKTVPGSC C
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 188 | 188 | 2.70223E-110 | – | |
| PANTHER | 1 | 397 | 397 | 2.3E-253 | – | |
| PANTHER | 1 | 397 | 397 | 2.3E-253 | – | |
| SMART | 2 | 175 | 174 | 7.9E-12 | ||
| Gene3D | 3 | 186 | 184 | 7.6E-78 | ||
| SUPERFAMILY | 4 | 169 | 166 | 1.14E-36 | ||
| ProSiteProfiles | 5 | 189 | 185 | 10.816 | ||
| Pfam | 6 | 115 | 110 | 2.7E-27 | ||
| ProSiteProfiles | 222 | 241 | 20 | 8.935 | ||
| SMART | 222 | 241 | 20 | 11.0 | ||
| Pfam | 224 | 237 | 14 | 0.6 | ||
| Coils | 232 | 257 | 26 | - | – | |
| MobiDBLite | 242 | 285 | 44 | - | – | |
| MobiDBLite | 257 | 281 | 25 | - | – | |
| Pfam | 290 | 305 | 16 | 0.046 | ||
| SMART | 290 | 309 | 20 | 4.8 | ||
| ProSiteProfiles | 290 | 309 | 20 | 8.718 | ||
| MobiDBLite | 303 | 322 | 20 | - | – | |
| SMART | 322 | 341 | 20 | 36.0 | ||
| Pfam | 323 | 336 | 14 | 0.54 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0380200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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