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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0382900 |
Transcript ID | LotjaGi2g1v0382900.2 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Histone H3; TAIR: AT4G40030.2 Histone superfamily protein; Swiss-Prot: sp|P59169|H33_ARATH Histone H3.3; TrEMBL-Plants: tr|K7VSQ3|K7VSQ3_MAIZE Histone H3; Found in the gene: LotjaGi2g1v0382900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87931765..87933224) extracted from Lotus japonicus Gifu genome v1.2.
CGTCGCATCTGTTTAAACCAAAACGCAGCGTTTAACGGCAAAAGCGTCCAGAAGTGTTTATTTGAACCCGAAGCGGTTAT CATCTCTTTGTGGTTCTTTTCTTGGGTCCTGTCCTCTGGCGATTGGAGATTCTGAAACCCTAATCTGGTAATTCCCTTGC TCGTTCTCTTCAAATTTCTTGTTTCCCGCTGAGAATTTCGAATTCTTCTTGTCTTCTATGCATGCTCACCTGCTTCTTCA CCTGCAGATAATTTCAATTCGTCTTCCGTGAAGCGACATGGCTCGTACCAAGCAAACCGCTCGCAAATCCACCGGTGGAA AGGCTCCAAGGAAGCAGCTCGCAACCAAGGTTTTCTTCGTCCTATCTTTTTTTCGTTTCGTCAACGATTGTTACTCGATT TTGGATTTTGGATTTTCGTCTTTTTTTGAATTTGAATTGTTTACAATCGTTTTTTTATTTTCTTTAAAAAATTGCAAGAG CATGTTATCATCTCAGAGGAGCTATGATTTTCCTAATTTGTTTCCCCTCGCTCTGTGAATTAATTTTGATTTTGAATTTG GTTGTTTAAGGCACTTTTTGAATTTGAGTTTAGCTTGTAAATTGTAAAGTTCTTATGAAATTGAAACCCTAGTTGTTGTT GGCTTTTAAGAATTAATGTGCATTTTCTTTACGGGTTGAATTTCGTAACAAATGTTGCAAGCATGCTATTGATATGAGAT ATGTATTTTAGTTAATTTGTATAGGTCCTTGTTTTATGTAATTTTTTTACATTGAGGTCTGATTTTGTGTGTCTTCTGTA TACAAAGGCTGCAAGGAAGTCTGCACCAACCACTGGTGGAGTCAAGAAACCCCATCGATACCGCCCTGGAACTGTTGCTC TCCGGTACATGAACTTTACCATTGAATTAGTATACTTATTTTCCCTTTTGCTTCGTTGAAATCTGTTTGGAATTCGTATT GAAACATTTTCCCACTCTTTTGATCTTGGAACAGTGAAATTCGTAAGTATCAGAAGAGTACTGAGCTCTTGATCAGGAAG CTGCCCTTCCAACGTCTTGTTCGTGAAATTGCACAAGACTTCAAGGTTATGATTCATACTTTATGTTTGTTCTCAGTTAT TGATGTCCTATTATTAACTACTGAGTGAATTGTATTTGTTTTTCTCTGTGGTGTAGACTGATTTGAGGTTCCAGAGCCAT GCTGTACTTGCTCTTCAGGAAGCTGCTGAAGCTTATCTTGTTGGATTGTTTGAGGATACCAATCTCTGTGCTATCCATGC TAAGAGGGTGACCATTATGCCCAAGGACATCCAGCTTGCTAGACGTATTCGTGGTGAAAGGGCTTAATTGTAGTATGTGT TTCGTCAATAGAAAGAACGAAAAAAATATTATCTTTGTTATGTTCATTTAGGTTTATATAATGCTATGCACTTATAAGCT GCTATGTGATTCAGACTTGA
CDS sequence (LotjaGi2g1v0382900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGTACCAAGCAAACCGCTCGCAAATCCACCGGTGGAAAGGCTCCAAGGAAGCAGCTCGCAACCAAGGCTGCAAG GAAGTCTGCACCAACCACTGGTGGAGTCAAGAAACCCCATCGATACCGCCCTGGAACTGTTGCTCTCCGTGAAATTCGTA AGTATCAGAAGAGTACTGAGCTCTTGATCAGGAAGCTGCCCTTCCAACGTCTTGTTCGTGAAATTGCACAAGACTTCAAG ACTGATTTGAGGTTCCAGAGCCATGCTGTACTTGCTCTTCAGGAAGCTGCTGAAGCTTATCTTGTTGGATTGTTTGAGGA TACCAATCTCTGTGCTATCCATGCTAAGAGGGTGACCATTATGCCCAAGGACATCCAGCTTGCTAGACGTATTCGTGGTG AAAGGGCTTAA
Protein sequence (LotjaGi2g1v0382900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 136 | 136 | 1.6E-104 | – | |
MobiDBLite | 1 | 43 | 43 | - | – | |
Pfam | 1 | 132 | 132 | 9.1E-54 | ||
PANTHER | 1 | 136 | 136 | 1.6E-104 | ||
Gene3D | 2 | 136 | 135 | 1.4E-79 | ||
SUPERFAMILY | 2 | 133 | 132 | 5.32E-57 | ||
PRINTS | 3 | 17 | 15 | 4.3E-85 | ||
ProSitePatterns | 15 | 21 | 7 | - | ||
PRINTS | 17 | 31 | 15 | 4.3E-85 | ||
SMART | 34 | 136 | 103 | 1.1E-74 | ||
PRINTS | 34 | 55 | 22 | 4.3E-85 | ||
PRINTS | 58 | 75 | 18 | 4.3E-85 | ||
ProSitePatterns | 67 | 75 | 9 | - | ||
PRINTS | 80 | 98 | 19 | 4.3E-85 | ||
PRINTS | 98 | 114 | 17 | 4.3E-85 | ||
PRINTS | 114 | 135 | 22 | 4.3E-85 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi2g1v0382900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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