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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0384700 |
| Transcript ID | LotjaGi2g1v0384700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase; TAIR: AT5G66330.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1; TrEMBL-Plants: tr|C6ZRZ2|C6ZRZ2_SOYBN Leucine-rich repeat family protein; Found in the gene: LotjaGi2g1v0384700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88110892..88113121) extracted from Lotus japonicus Gifu genome v1.2.
GGAGACTCTTAAATCACATTAAACGCGTAAACCTTTTTCGACAAATTATTTTTTATACACACATTCGACAATCAAACTTA AACTAAATACTCAAATAATTCAATCTGATACATTAGACCTGGTTGGTTAATGGTTATGGTAATGCTTATATATATATATA TATATATGCCTTTCTTCTTACCTAAACCAAAACATAAGTAAATAGCTTAATTTCAAAAGGATTGCTGTACTGTATCTGAG TTCTGTGCCCGTGAACCCACTCATCCAAAAGATCTCTGACTCCTTCCTTTCATTCACACTTTTCACCGTGTACTCTTTTC TTCCATCACCATCAAGATTCTCATCCAACGCTCCTGATTAATTCCCCGTACCCTCACTGTCCGTGCAACTCCACACACCC CTCTAATTTGGGTTAATCCAGCTCCACAGTACTCAGAAGTCAGAACTTCAAGCACTGAAAATCTCAAATGGGGTCTTTGT TTTTCTCTCTGTTCATGATCATCTCAGCTTCAGGATTCCTATTCAGAGCAGAATCAAAGACATTTTGGGGAGATGCAGAG GTTCTGAAGAAACTAAAACAGAGCATGGACCCTGCTTCAGTCACTCCAGGCTCATGCGTGAGCTCCTGGGACTTCTCCAT CGACCCATGCGACAACGTTTCAGGTGAGAAGTTCACCTGCGGGTTCAGGTGCGACGTCGTCGTTTCAGGGCTGAGCCGAG TCACCGAACTCAGTCTCGACCAAGCGGGTTACGCCGCCTCACTCTTCTCCTTCACCTGGAACCTCCCTTATCTAGAAACC CTCGATGTCTCCAACAACTACTTCTCCGGCCACATCCCCGATTCCTTCTCGAACCTGACTCGCCTCCGCCGACTCGGTCT CTCAGCGAACTCGTTCTCCGGCGAGATACCCTCTTCAATTGGTTCCCTCTCGAGCCTCGAAGAGCTCTACCTCGATAACA ACCACCTCGAAGGAGCAATACCCAGAAGCTTCAACGGGCTTGTGAGCTTGAAAACACTCCAACTTCAATCAAACAAGCTC GTGGGTCAGTTCCCAGATTTGAGCTCCCTGAGAAACCTTAACTACCTTGACCTCAGTGCAAATTCCCTCGCCGGAGCATT ACCGGCGTCGCTGCCGGTTTCCTTGATTCAGATTACAATCAGGAACAACCAGTTAACCGGAGTCTTAGCCTCTGAAAGCT TCAAGGATTTGGCATACTTGCAGGTAGTGGATTTGAGTGGTAACAGATTCACTGGCTCTGTTCCCTCTGTTCTGTTTCAG CTTCCATCGCTGCAACAATTGACACTCTCCTTCAACCAATTCTCCTCCATAGAAACCCCTTATCCAGGTTCCTCATTGCA AAGCGGGCTCATTGCGGTTGATCTGAGCAACAACCAGCTTCAGGGGCTTCTACCATCGTTCATGGCGCTGATGCCAAGGC TTTCATCTTTGTCATTGGAGAACAACCGGTTCACCGGTCTAATACCGACCCTGTATGCAGTGAAGACGGTTTTTCCTCAA ACCGGGTTCGCTTCGTTCCAGAGGCTTCTGTTGAGAGGGAATTACTTGCTAGGAGGGATACCTCGGCTTCTGCTGACTCT GAAACCTGATTCTGCTAATTTGAGCCTTGTCGATAACTGCTTGTTTAGGTGTCCTCATGTTTTCTTTTTCTGTCAAGGTG GTCAGCAGAAATCATCAGCAGAATGTAGTGGATTTAGCCAACTCACCCATTAGATGATGATGATGATGATGATGATTGTG GTTTGCAATTTGCATAGTTCTTTTGTTTGTTTAACTAGTGTACAAGTTTTGTTTTGTGTATTATATTTCATTTAATTTTG ATTTAGGATGATGATTAATGATTGGAGATTTTGTCTTGAATACTAGTAGTACTGGACAACTATGAATGTGAATTCAGCAT TTTCAGCTGTGAGTGTGAGAGGTTACGAAGATTAAATGTGTGTTTTGGTCAACAATGATAAGATCAAGTCGTCTAGTGCA AGATTTTGTCTCTGCTGTGACGTTGCAACATGTGAGTGTGGGGTGGGGAAAACCCACACGTTCGTGTAGTCGTTGAGGTT CTGCCGTTATTGAACTGAACCATTGTCAGATGGTTGTTTTTCTAACATGTAGATCATGTAGTGGTTTATTTTTTGGTAGT GGTTTTGAAGACACTGTTACTAATAAGGTTGGCCCAAAAACTGAAACAAATTATAGGCCAGATGCTAACT
CDS sequence (LotjaGi2g1v0384700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCTTTGTTTTTCTCTCTGTTCATGATCATCTCAGCTTCAGGATTCCTATTCAGAGCAGAATCAAAGACATTTTG GGGAGATGCAGAGGTTCTGAAGAAACTAAAACAGAGCATGGACCCTGCTTCAGTCACTCCAGGCTCATGCGTGAGCTCCT GGGACTTCTCCATCGACCCATGCGACAACGTTTCAGGTGAGAAGTTCACCTGCGGGTTCAGGTGCGACGTCGTCGTTTCA GGGCTGAGCCGAGTCACCGAACTCAGTCTCGACCAAGCGGGTTACGCCGCCTCACTCTTCTCCTTCACCTGGAACCTCCC TTATCTAGAAACCCTCGATGTCTCCAACAACTACTTCTCCGGCCACATCCCCGATTCCTTCTCGAACCTGACTCGCCTCC GCCGACTCGGTCTCTCAGCGAACTCGTTCTCCGGCGAGATACCCTCTTCAATTGGTTCCCTCTCGAGCCTCGAAGAGCTC TACCTCGATAACAACCACCTCGAAGGAGCAATACCCAGAAGCTTCAACGGGCTTGTGAGCTTGAAAACACTCCAACTTCA ATCAAACAAGCTCGTGGGTCAGTTCCCAGATTTGAGCTCCCTGAGAAACCTTAACTACCTTGACCTCAGTGCAAATTCCC TCGCCGGAGCATTACCGGCGTCGCTGCCGGTTTCCTTGATTCAGATTACAATCAGGAACAACCAGTTAACCGGAGTCTTA GCCTCTGAAAGCTTCAAGGATTTGGCATACTTGCAGGTAGTGGATTTGAGTGGTAACAGATTCACTGGCTCTGTTCCCTC TGTTCTGTTTCAGCTTCCATCGCTGCAACAATTGACACTCTCCTTCAACCAATTCTCCTCCATAGAAACCCCTTATCCAG GTTCCTCATTGCAAAGCGGGCTCATTGCGGTTGATCTGAGCAACAACCAGCTTCAGGGGCTTCTACCATCGTTCATGGCG CTGATGCCAAGGCTTTCATCTTTGTCATTGGAGAACAACCGGTTCACCGGTCTAATACCGACCCTGTATGCAGTGAAGAC GGTTTTTCCTCAAACCGGGTTCGCTTCGTTCCAGAGGCTTCTGTTGAGAGGGAATTACTTGCTAGGAGGGATACCTCGGC TTCTGCTGACTCTGAAACCTGATTCTGCTAATTTGAGCCTTGTCGATAACTGCTTGTTTAGGTGTCCTCATGTTTTCTTT TTCTGTCAAGGTGGTCAGCAGAAATCATCAGCAGAATGTAGTGGATTTAGCCAACTCACCCATTAG
Protein sequence (LotjaGi2g1v0384700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLFFSLFMIISASGFLFRAESKTFWGDAEVLKKLKQSMDPASVTPGSCVSSWDFSIDPCDNVSGEKFTCGFRCDVVVS GLSRVTELSLDQAGYAASLFSFTWNLPYLETLDVSNNYFSGHIPDSFSNLTRLRRLGLSANSFSGEIPSSIGSLSSLEEL YLDNNHLEGAIPRSFNGLVSLKTLQLQSNKLVGQFPDLSSLRNLNYLDLSANSLAGALPASLPVSLIQITIRNNQLTGVL ASESFKDLAYLQVVDLSGNRFTGSVPSVLFQLPSLQQLTLSFNQFSSIETPYPGSSLQSGLIAVDLSNNQLQGLLPSFMA LMPRLSSLSLENNRFTGLIPTLYAVKTVFPQTGFASFQRLLLRGNYLLGGIPRLLLTLKPDSANLSLVDNCLFRCPHVFF FCQGGQQKSSAECSGFSQLTH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 19 | 16 | - | – | |
| PANTHER | 11 | 417 | 407 | 2.8E-163 | – | |
| PANTHER | 11 | 417 | 407 | 2.8E-163 | – | |
| Phobius | 20 | 23 | 4 | - | – | |
| Gene3D | 23 | 196 | 174 | 9.0E-42 | ||
| Phobius | 24 | 421 | 398 | - | – | |
| SUPERFAMILY | 79 | 397 | 319 | 8.16E-54 | – | |
| Pfam | 105 | 142 | 38 | 2.4E-6 | ||
| SMART | 106 | 129 | 24 | 190.0 | ||
| SMART | 154 | 177 | 24 | 1.6 | ||
| Pfam | 155 | 214 | 60 | 3.2E-9 | ||
| Gene3D | 197 | 295 | 99 | 5.9E-21 | ||
| SMART | 201 | 225 | 25 | 86.0 | ||
| Pfam | 229 | 285 | 57 | 4.7E-10 | ||
| SMART | 272 | 298 | 27 | 10.0 | ||
| Gene3D | 296 | 415 | 120 | 5.7E-10 | ||
| SMART | 322 | 345 | 24 | 40.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0384700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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