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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0385600 |
| Transcript ID | LotjaGi2g1v0385600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase A; TAIR: AT5G66360.2 Ribosomal RNA adenine dimethylase family protein; Swiss-Prot: sp|Q9FK02|DIM1B_ARATH Ribosomal RNA small subunit methyltransferase, mitochondrial; TrEMBL-Plants: tr|G7KGB1|G7KGB1_MEDTR rRNA adenine N(6)-methyltransferase; Found in the gene: LotjaGi2g1v0385600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88155612..88164224) extracted from Lotus japonicus Gifu genome v1.2.
TGGTAGATGAATTTAATTTAAGAAATTGAAATTGAAATTATATGGATCAAATCGCACATTGTAATTATGGCATTTTCCTC CTGGGTATTGGTTTTTTCTTACCCGGTCCAAACCCAAACCCAGCCCAGTTACTGGGTTACAGTAATGAACACTAACAGAA TCATTTGGGGGTGGTGAGAACTGAACTGAACTGAACTGAGAAACTGTTGCGCAAGCATGTGCAAGAGTGTGGCACCGTAA CCTGAACCACCATGTTCAGCGCCACAAAACGGGTTACTGGGTTCATTCCACGGTGGTTACATCCAATCCGGCAACTCCAT GGCGACGGGGAAGAGAACATACGCTTTTACAAAAGCAGAGGCCAGCACATTCTCATGAACCCTCGAATTCTCGACACCAT TGTTCAAAAATCCGCAATCAACCCTTCCGACAGGGTCCTCGAGATCGGACCCGGCACCGGAAACCTCACCCTCCGCCTCC TTGAAGCCGCCCACGAGGTCGTCGCCATCGAGATCGACCAGCGCATGGTCGACGTTCTCGAGAAACGCGTCCTCCAACGC GGCCTCCGCAGTAAACTCAAGGTAACCAAGTTCTACTTTCGAGTTTCTCACACACACCACCTGTTCGATGAAATGCCTGA ACCGAAAAACTCACAGACATGGTTGTTTTCATTTTGCAGGTCATAAAGAAAGACGCATTGAGAACCCAGTTCCCGCGTTT TGATCTCGTCGTGGCCAACATTCCATACGGGATATCTTCCCCTCTTGTGTGTAAACTGGTGTACGGGAAGAGGCCGTTCC GCAGCGCCACTCTTCTGCTGCAGAAAGAGTTTGCCCGGAGGTTGCTAGCGAATCCCGGGGACTCCGAGTTTAACCGGTTG GCTGTGAATGTCAAGCTGCTGGCTGATGTGGAGCTTGTTATGGATGTGAGCAAGAGGGACTTTCTGCCGTGCCCGAAAGT TGATTCCTCGGTCGTCATAATCCGCCCTAAGGATCGCGTCCCGGATGTTGATCTCCGGCAGTGGAGGGCTTTCACCAGGA CTTGTTTTGGTCACAAGAACAAGACACTAGGGGCCATGTTTAAACAGAAGAGGAAAACTTTGAAATTGTTTCAAATCTCT AATAATAATGATGATTGCATTGGAGATGAGTCAGGAGAGTTTGGGTTTTCTCCTTCTTTAGAAGGATTCAGGGAAAATGC AGTTGAAGTGCTTAGAGCTGGAGGGTTTGAACACAAAAGGCCTTGTAAACTTTCAATTGAGGAATTGCTGCATTTGCACT CCTTGTTCAATCAAGGTGGCATATATTTTGATCGCCGTGGAAAGCTCACGAATGATGATGATGAGGAGGAGGAGGAGGAT GATTATGATATGGTTGAGGATGGTGATGACTAGTGCTCCCTGTCCCTGGAGTCTGCAGGATTCTTTCATGTCACATTTCC CTCTTCAAAGTCTCACATGTTAGAGTGATGAGTGCAATATGCTATTCTAGTTGTAGAGGATCCTAGCCTAGGCAGTTAGT TTATTAGAATCAGTTCAGAGGAGGTTAGTTTATGTTATAGCTAACTTCCTATATATGTAATCTACCTCTATAATAATTCA TTCATTCAATACATGAGATTCAGGTCACACTTCGGAAGGAGCAAGTTGAACCAGTAATCACTGCACTGGACCCGATCGCA TGAGTTTCTTGTTTCTCCAAAAATTCCGGTGCGGTTTGCCTCAGTTGTTAGCAAGGAATTCTGATTGGGAGCAACAAGAT GTTTTCTTCTCTCCTGGTTGCAGTCTTCTGTTTCAAGCTCAATTTTGACGAAGCTTTTTGGTTGCAAGTATGCTTATCAA GCATGAGATAAGATAGATACATAAAGATTTTCAGTCTCAAACTGAGGCAAAGTGAAGACAGCTCAGAACAGAGAGCTTCG AAATACGAAGCTTGAAGGCAAAACTGTCAGTAAGTTTTTTATGAAAAACAAATCTGTTTCTAATTCTCTTTGTGCAATAG GTGAATCCATAAGTCACAAAGGGCATGTTGATGTTATTTCTGAAGGTTTTCCTTCAGAATATGAGTCCTTAGTTAATGAT CCCATTGAGTGTTAAGTTTCAATCACTAATCAGTATGAAATTAAAGAGCGTTGTTGTTTGCTCAAGAGGTTTGTGTTGAG AGAAACAAGGTTTCAAATCTGTTCACGGAGATGTTCCAACTTCCAACTTCATCTTCAACCACTACACAAGCTTACTTTTC CTCTGCCTCTCGAGGTAGAGGCAGAGGTGGAAGGGGAGGAAGAGGTCGAATGGGCAGGTTTAATGTACAATTTCAGGTCT ACATGAAATTTAGACATGATGCATCTGTATGCTATCATAGTTCATAACTACTTTGTTCAGCCAGCTTCTTTTTCGCAAAA ATATCATCCTCATCAATTTTCTTCACCACAACAATTTCATCAGATAGAACGAGGGTTCAGAGGAACCTTTCTTCTCTGAT AATCGATGTGACACGAGAGATAGCTAACAGATAATAGAGCAATACAATATAATACAAATCCTATCTGAAAAGGCATCCGT ATTTCAACTTGAAATTTACCCTCTAGGTTGAATTAAATATCTCAATACATATATTAATTTATACATGCTCGAATTTATAT CTTGATGGTATAATCCAATCATGCATTAATGGGTTGCACACTAATTGGGAGCTTCTTCTTCATCTTCACTGTTGGAAAGT AAACTATTTCATCCCTCTCAGCAACCCATCTGGATGGTACAAAGTAGAAATCAGTTACATATCAAAGATTCAAATCATAA AGCATCTTTAAAAAAAATCAAGTCAGGCTATATGATATTACTTGTAAGTAGTAACAAAATGGTGAAGGAAAATAGAGAGC TCTAGCCTGGAGAGTTCTAATCCAGGGCATAGTCTATGTCCACCACCAAATGGGGTAAAGCAATTGTTACCCACAGCTCC AATTTTCTGCAAGCAAAATTCAAAGATGTGAGAAAAATGAGTTTTTATTTTATTAATTCATTAGCATGACACGTCTATAA AATATGATTGGTTGACAACATAAAAATATTTTCATTGTTAGTGCATCTAGAAGCTCACCTCCCACCTCCATGGATCAAAC TGATAAGGGTTTTCATAGTTCTTGTTGTCCACATGAACTGAGGTAAGAGATGCCATAACACCCCAGTTCTTGGGAATTAG GTACCCTGAAAATGCAGAACAGTGAAACTGTATTTATATTTTCCTTTCTATGCATCTATAATTGAAGTCCAACAATACTT TTCTTTGTGATAATGAATCACCTTTGATTTCTACATCTTTGACTGCTTTCCTCCAAATAGCATTGACAATATTAGCCATT CTAAGAGTTTCACTGATGACCTTTAAGAAATTAGGAAATGAAGGACAAAACACAAATCCATGGGCAAAATGTCAGATACA TATAACACATTGACTGCTTATTCTGCAAATAACAGCTGACGTTGGAGACTCACATTTTGAGTAAATGGTAATGACATGTA ATCAGTCCATGCATAATTATCTGAGCAATTGGTCTTCTGCCTCTTCAATTCCATATTTTCCTCCTGATAAGAAATAAAAA CAAAATTAATCAAGATAAGTTAAGTATTGAATTGTTACTTGAACGTGAATTCAAATGACAAACTATTGAACTTGTCATAT AGACTTGTTAGCGTTGGTGGGAGGCTATACAACAACCATTTGGTTTGAAATAAATGAATGAATGTTTTGTGAAGGTACCT GCAGTTTGGATAAGGCGAGGGGAGAGTCAGTGAGGAACTTGAGGGCCAATGTCATAGCCGTAGGAAGGGTCTCCTCTCCT GGGATCATGAACTCTATAATGTTCTCGCTAATCATTTCCAAGCTTAGCTTTGAGCTAGAGTCCTTATCCTGTAAGAGCAC GTCCACCACATCATTCACTGCACTCTCATGATTATTCTCCATAAGTTTCTTCTTCCTCTCCTCTATTATCCTCCTCACCA TCTTCACCATCCTTTCCTTAGCCTGCACAATTCCATTCACTTTAATTATCAACTTATTAATCAATTAATTTCTCATAAGT CACAAATAAATAAGGACAATTCTAATTCCCCTGTGCACCATGATAAAAACTGATTCACCTATAAACTATGTCTTTACTAC TAACATTTAATATATATTATTTACAATATGCATGAAATTAATTTACAGAAAAACTTTTTTAACTCGTGAATCAAATAACC TTCAAGGATTTATATAGCGTTGTTCCGGGAAACTTGATAGGTAAGCAAATCAAGCCTTTGATGAATTCTTCAAATTCTCT TTTCAGGAAGTCCAAATCTTCACCAGGACCAACACTCATCAAAACTTTAACCAAAACCCTGAAGGTAATCTGTGTGAAAG AGAGAAGAAAAAAGATTAGGATATTTCGCAGTCATTTACCGCTTAGTAACTGGGAGAAAGACCTTTTTGACTTGATCTTG AACGTATATGGTTGGGTGATGGGTCCAAGAAGCGAAGCATTGTTTGACAGAGTTTTCAATGTCTGTGGTGATTCGAGCTT TGAGTTGTGGGGAGCGAAGGAAGCCTCCAATGAGTGAATGAATTTTCTTGTGCATGGTCCCGTTCATTTGGAGTATGGAG TGTTCACCCATCAATTCTCGAATGGATTTTGGATAAGCAGGGACGAAGTTGTTCCCCTGGTTCTGCAGAATCACCTTGTT CACTTCCGGGTCTGTTGACACTATTACACTGCTTCCCAATATGCTGGTTCTGAACACATTCCCATACCTGCAGAATCACA CATATGTTAATTAAGTAGAAAACAATATAAAAATCATACTTCAGTTAAAAAAAATGAACAGAACTTTCTATTAATTGATC TGAAAATCACGAAACTGTATCTAAACACATTTTGGGTTTGTTTGGATATCTATTGTTTGTTGTGCAAATTGTAAGATAAT TGAATTGCATAATTGAAATCGGAGGTTAGTGTTCCTGAATGGTAGTTCAAGTGGTAAGAGTTAGGGGACATGTAAGTTGG GCGGGGAAGGTTGCGAGTGCAATTTATCTTTCCAATGAACTAGTATTGAGAAACACACCTAGTGCATGTTTGAATAAACG ATAAAAAATCAAAGTTTGTCAAAATCACATGAACAGAAGCAACTTCATTTAATTTTGGAGGATTTTGACTTCATGGTAAT TTTTCATAAAAAATGATCACATTGACAATACTATTCTTCCTTTCCAAACATTCATTCTAAAGGGGCAACTACTCTATAGC TAGTTATAGTTATTACAGAAGCAGGCTTTTTCTGCTTTTACCTTCTTTGAAAATATGTGAGCCTTTTTCTCACTAGGAGG AGGCTGCAGGGGCAAGCCTAGAATGGGGACAAGTGGACAACCACAAGATGGTGTATTTATTGTTAGATCACGAGGGTGTT AATGCTCCTTTAATGAACTGTATTATATTATCTGACTGAGACACCATTGTTTGAGCTACTTTAATCGACTGCATTTTGGA GGTTGTCATGAGATATGATTAAGAAGGCTAACTGATTCTTTATAGGTAGATATAGATACTCTTCCAAATCACTTGGTCGA AGGAAGGTGGAGTTTTTTTACAGTTACCATTTATTACAGACAGTAATTGTACTCAACTGGTCGTTTCTTTCACCCTAGCT AGCTATATGTAGTGAAACATGCCAAACATTGATTTTGTCTTCCATATGCACAACATGTATAGCAATTTTTAACTCATTTG GATTCTTGAGGGAAAAGGATATATATCTATATTGTTCAATGCCAAAACTAAGTCACCTACAAAGAGAGTGGCGCCTCTAG ATGCTTTCAAGAGCTTTCACTTTGGCATGCCTCTTTCCTTTTGTGATTATGTATTTGATAGAGTGAAATTCTCAATTAAA AAAACCCTAAAATCTATTCTAAGAAGCTAAAGAAAGACATTTCATCAATTTTTCGATACTTTTATTAACAGAAATTACAA TTTATACTAAGATTAAGGAAGCAACCCTAAAATAAAGGAGAACCACACATGTGACACAATCCTATTTCATGGAATATAAT TATCTTCATAAACACCTAATAATAAGCTAGAAAAATTTTCCGATGAAGAAAAAAAAAGCTAGAATATTAATTAGAATTAA TAAAGCTAATACAAAAGAACAAAATATATTTACCCCAATAGTCAAAAGCCTAATAAAAGTTAAGAAATGTGTGCTTTTGC TGTTGACTAAATTGCCCTTCTACGGTTCTACCAAATATTGTATAAAAAAAATGATACATTAACACCTCAATTTTATCTTC CACTCAAATAGAGATAAGGAATAGAAAACAGAAAATTGAGAAATACTATGAATGATATAATAAATAATGTGATGAGAAAA TAAGAGAAATATATAAAAAGATATCATAAGTAGAAATTAGATAGAAAATGTTTGAATGTACAAAAACTGATATTCTATAT CTTGCTCAAATTAAACTAGCAAAAACATTTCTATCACGAATCCTTTACTTTCATAATGAAAGAGAAGTCAGAATATTCTT GGTGGAATCTGTCTCTAATTAGAAGACTAAATCTACCTCACATTTCTACCGTTAGTTCATTTTTCTAGAACTGAATTCAA TAAAAGCTAACATCTCAGAACTGCATGCAAACTGTAGATAGCGTGTTTGGATTGGATTCCCATATCTTTCTAGAATTCCA AAAACGTTAATATATAAAAGGTACACATCCTTTTATCAAAAAAAAAAAAGGTACACATCCTAGCTAGCTTATGGTTCAAA TAAATTTGTAAACCGAGATAAGTAGATTAATTTTTCTTATACTAAATATCTGATTAAAACAAAAAAATAAACTTAATATC CTAAATGTCAGAAAATATATGCATTTCCTTTACTTTCTGTTCTTTGAGTTATGGATTATAAAAAAAACAAGTTATTTTAT AAAAGTAAGTTTTAGCTATCGCAACGGTTGATTTAAAAATCAATAATTAAGCTTAAAAAACATGCATCATAGTTTATTAT ACATAAGTGATGATGATCACGATCGATCTCGTCTCTCAGCAGTGGCGGAGGCACAGGGGTGACTAAGCAGGAAGTCACCC CTGGTTTTTGGGAATTTCTCAGCAAAAAAAAATTGAAGCAGAGAAAGTCACCCCTGTACAAAGATGCCTTCTGATTGTTT CTTCTTGGACGCCATGGAAGCTGGAGTTTCTGGGATGATGGACTAGGGTTTCTGGGAAGGGTTGGAATTCAGGGAAGGAG AGGAGTGTTTTCCAGGGAAGGGAAGGCAATAGAAGGGCTCATGAACTAGCTGCTACAGCCCAGATCAATTTCTTTTGCTT GTTGAAGAAAGTTTTTGTACCGAGTATCTAGTGGGTGCATTCATTATTGTTATTTTCTTTACTTTTCTCAATGTTTTACC TACAATTCTACAAAGAGCTGGCAGACACTATTTCATTAATTCATTTTCTTATTCTTGGCCTTGTAGCTTCAGCTTTTTTT TTTTATCCTCGTTTGAATGAGTTTGTGGGCCTTTAGCATTTTTAATGAAACACTTCATTAATTGATAAAAAAAAAATTAA TTCAAACTTAACTCCAACAAGGCAACGAGAAAGAACCCAAGAATTTTGCTAAACTAATATAACATTTTGAACTTTTTTTA TTTTCTCTCTTGCTCTTCATTTTCTCACATATGACTTTTTTTTTTTTTATGGATATTCAAATTTTCATGAGTTCAAACTC GAATATTGGTTCATTTTTGTTTTTTTTTTACTTAATTGCTCTGATTATATGAGATTGAATTTGTGGTGCTTGTGTTTTAC TTGGAAAAAAATTGACAAAATTATGCACACCAAGTGTTTGTAAAAAATCCCTTTTAAGATTTAGCCTTCAATAAAGAGAT TTGGAATTTTCATACAAATTATACTTCTTTAGATCCTAGTCCCCCTATGAAATTTCTGCCTCAGCCCTGTCTCTCAGTGG AACAGATAAGCAGGAAATTAAAAAAACAGAAAAGGCAGACAGTATATTTGCTGAGCATAATGCATGTCACTTGCCTCGTT GAGAAAGAAAACATGAAAATGGTAAAAACAATTATAAGAAGCATAAATTCAAAATGAAAATGAAAACTTACAGAGAGTTG CGGTTTTGGAAGAAGGTGACAGGGCGAGAGGAGTAGCCAGAAGCAATGAAATCAAGGGTCTCTCCAAGTAAAGGCCAACC AGAGTTCCCTTTTGGAATTATTACTCCCTTTCTCTCTGTTTTCTCCTTCTTCTTCTTCCCAAACAGAAACCACCAACTCA ACATCAACAAGATGATCATAATAACCCATAGGCCTATAATCCATTCCATCTTAATTAATTTGAATTGATGGATGAGTCTG TGTATAGCTATAAAGCCCTGTGTATCTTGTGAGATATGGCTCTGGTTATCAACTAACTACAAAAAGCTTGCGGATCAGTG GGGACTTGTCGGTTGTCTGTTCATGCAGCAGTTTTATTGTTTGGTGAGAGAGAAAGAAAAAAGAGAAGAGAATAGTGAGA GATAGAGATTAATGAATATTGTTTGTTTGATATTCAAGGAACAAACTTCTTTT
CDS sequence (LotjaGi2g1v0385600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAGCGCCACAAAACGGGTTACTGGGTTCATTCCACGGTGGTTACATCCAATCCGGCAACTCCATGGCGACGGGGA AGAGAACATACGCTTTTACAAAAGCAGAGGCCAGCACATTCTCATGAACCCTCGAATTCTCGACACCATTGTTCAAAAAT CCGCAATCAACCCTTCCGACAGGGTCCTCGAGATCGGACCCGGCACCGGAAACCTCACCCTCCGCCTCCTTGAAGCCGCC CACGAGGTCGTCGCCATCGAGATCGACCAGCGCATGGTCGACGTTCTCGAGAAACGCGTCCTCCAACGCGGCCTCCGCAG TAAACTCAAGGTCATAAAGAAAGACGCATTGAGAACCCAGTTCCCGCGTTTTGATCTCGTCGTGGCCAACATTCCATACG GGATATCTTCCCCTCTTGTGTGTAAACTGGTGTACGGGAAGAGGCCGTTCCGCAGCGCCACTCTTCTGCTGCAGAAAGAG TTTGCCCGGAGGTTGCTAGCGAATCCCGGGGACTCCGAGTTTAACCGGTTGGCTGTGAATGTCAAGCTGCTGGCTGATGT GGAGCTTGTTATGGATGTGAGCAAGAGGGACTTTCTGCCGTGCCCGAAAGTTGATTCCTCGGTCGTCATAATCCGCCCTA AGGATCGCGTCCCGGATGTTGATCTCCGGCAGTGGAGGGCTTTCACCAGGACTTGTTTTGGTCACAAGAACAAGACACTA GGGGCCATGTTTAAACAGAAGAGGAAAACTTTGAAATTGTTTCAAATCTCTAATAATAATGATGATTGCATTGGAGATGA GTCAGGAGAGTTTGGGTTTTCTCCTTCTTTAGAAGGATTCAGGGAAAATGCAGTTGAAGTGCTTAGAGCTGGAGGGTTTG AACACAAAAGGCCTTGTAAACTTTCAATTGAGGAATTGCTGCATTTGCACTCCTTGTTCAATCAAGGTGGCATATATTTT GATCGCCGTGGAAAGCTCACGAATGATGATGATGAGGAGGAGGAGGAGGATGATTATGATATGGTTGAGGATGGTGATGA CTAG
Protein sequence (LotjaGi2g1v0385600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSATKRVTGFIPRWLHPIRQLHGDGEENIRFYKSRGQHILMNPRILDTIVQKSAINPSDRVLEIGPGTGNLTLRLLEAA HEVVAIEIDQRMVDVLEKRVLQRGLRSKLKVIKKDALRTQFPRFDLVVANIPYGISSPLVCKLVYGKRPFRSATLLLQKE FARRLLANPGDSEFNRLAVNVKLLADVELVMDVSKRDFLPCPKVDSSVVIIRPKDRVPDVDLRQWRAFTRTCFGHKNKTL GAMFKQKRKTLKLFQISNNNDDCIGDESGEFGFSPSLEGFRENAVEVLRAGGFEHKRPCKLSIEELLHLHSLFNQGGIYF DRRGKLTNDDDEEEEEDDYDMVEDGDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 25 | 321 | 297 | 2.0E-154 | ||
| PANTHER | 25 | 321 | 297 | 2.0E-154 | – | |
| SUPERFAMILY | 29 | 314 | 286 | 3.55E-63 | ||
| TIGRFAM | 31 | 311 | 281 | 1.0E-71 | ||
| Pfam | 32 | 249 | 218 | 1.6E-60 | ||
| Gene3D | 32 | 216 | 185 | 4.5E-61 | – | |
| ProSiteProfiles | 32 | 317 | 286 | 63.88 | ||
| SMART | 46 | 215 | 170 | 2.6E-75 | ||
| CDD | 61 | 140 | 80 | 1.38671E-10 | – | |
| ProSitePatterns | 62 | 89 | 28 | - | ||
| Gene3D | 218 | 321 | 104 | 1.0E-17 | – | |
| MobiDBLite | 324 | 347 | 24 | - | – | |
| MobiDBLite | 330 | 347 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RRNA modification | The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | RRNA (adenine-N6,N6-)-dimethyltransferase activity | Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | RRNA methyltransferase activity | Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule. |
Expression pattern of LotjaGi2g1v0385600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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