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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0389900 |
| Transcript ID | LotjaGi2g1v0389900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-3-methyladenine glycosylase 1; TAIR: AT1G75230.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2; TrEMBL-Plants: tr|G7KDL7|G7KDL7_MEDTR HhH-GPD base excision DNA repair family protein; Found in the gene: LotjaGi2g1v0389900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88562149..88569130) extracted from Lotus japonicus Gifu genome v1.2.
CGTAGATGATAAAGGAAGGGAATAGAGAAAAGGTAGTTTTGATAAAGAGAAGCTTCTAAAAAAGTTGGGTAGAGAAAAAT GTGAGATTTAGCGTTCGCGAATCCGATGCAAAATTTCTCGCCCATGTCCTGACTTTTTCGTACATACACATGATTTGTGT CGGGTCCAACCGTCCTCCACATACTAGTGGAGTTAGCGTCGCAATACAACCGCCACTAACTTCCCCATGTAGGACGCCAA CATGGTTGGTGATCTTCATGTGAGCAATAAAGGAAGATTAGGCCCAATGGTTGAGTTTGGCAATTCTTCATCAACTCAAT TTTGATTTTTGACCGGTATGAAGCGAACACGATCCCAAACAAAACCCTATTCAAATCCAAACGATTCACTTTCCTCTTCC AAAATCTCCTTCCGCGCGCGAAAAATCCGACGAACCCCCCTCATCACCAACAAAAACCCTAACCCAGAACCAGAGACTTC ATCAAAACCCTCTCCCACCACCATCTCAAAGCCGTTAACCGCCACCGGCGAAATCGAAGCCGCCCTCAACCACCTCCGCG CCGCCGATCCCCTCTTAGCCAACTGCATCGACTCTCTCCCTCCTCCTCACTTCTCAAACGACGTCGTCGTCACCCCCTTC TTCTCCCTCACGAAGAGCATCATCTCCCAGCAACTCTCCAACAAAGCAGCCTCCGCCATCGAATCCCGCTTCGTCTCCCT CTGCGGCGGCCGCGATTCGGTTCTCCCCGACGTCGTTTTGTCCTTGTCTCCCGTTCAGCTCCGGCAGGTTGGAATCTCCG GACCCAAAGCGACTTACCTCCACGACCTCGCCACCAAGTACATCGATGGGATTCTCTCGGATTCTACTATCCTGCAAATG GACGATGAGACGCTGCACGAGAAGCTTACCTTGGTTAAGGGAATTGGGCCTTGGTCTGTTCACATGTTCATGATTTTCAC GCTTCACCGCCCTGATGTTCTTCCTGTTGGGGACCTCGTTGTTCGGAGAGGAGTGGAGCGATTGTATGGACTTAAGGCAT TGCCTGCTCCTTCCCTGATGGAACGATTGTGCCAGAAATGGAAGCCTTATAGCTCTGTTGCCTCTTGCTACATGTATAAG TTTATGGATGCTAAAGGGGTGTTGCCATTGCCAGCCACCACTATCACAGATCATCAACAGATGGGTTAGTTTTCTCAGGT TCTAACCTTTTGCTTGTGTTAAGATTATTGTTCTGTATTCAGTATTACTATTTAGTGGTTAGTCAACTTGAATTGGGTAT TCACCAATTCTGTAGCTGAATGTGGGCAGTGCATTTATCTTATTAGGTTGGGATAGAAGTGATTGCTGATTATGGGAGAT TAGTTTTTGAAAGTATTAAATTTATTTTATGTTGATTTGCACTTGCTTGTCTGGGAAGGATAACTTGTTACTGGAAATGT TGTGTGTGGTTGGATTGGAGAAGATTCATGTTTAACAATGAACCGAAGAATAAGTACTTTTAGTTAGATGAATGGAAATC CAACCTCATGCACTTATAGATTTGGTTTTATTTTGTGTATGGCTGTGTGATTTTTGGACTGATGTGAAACTAGTCATGAC AATGCTATATAAGCACTGCTATGAACACAGATGCATAGATTTTTGACAGGGCCTTGCTGAGATATTAGCATCTTTTGTGG CATTGGATTGCTTCTTATTGGCTTGTGGGTTTTATTTTATTAGGTGGTGGGGAGTGATCCTCTTACTGTGACAAATAAAG GGACGGATGTAGATAAGAATTCTCCTCAGATGGCAAGTGAGATCTTCTCTATTCCCATTGCTGTCCTATGTCAAGATTGT AATGGTGGGATAGAGATTCAGACACATTTTGAGGACATAAGATTTCAACGCAGAGGTTTGTTTGTTTGGAAACATGGAGA ATGAGACACAATTCTTAAACTAGTTTCTTTGTTTGGAAACTATTACTACTTTTGATATGTAATGTGGTGAGCAGGAGTTC TATTATACGAAGTGTTTAGTTAGTGAGGATTAATTCTAAAGAGTAAAGATGTAGACGGATACCAGCTGTATGCTGCCATG GTTAAAAGAAACTACATAGTGAAATGATAATGGAGAGGACATCTCATCTCATGAATTTCAATCTAAATTTTCTGTCATCC TAGATTGACATAAAATTCCATTTCAAATTAAAAAAAAAAAGAAATAGAAGCATCATCATGAAAAGATTAAATTGACCTAA ACCTCCATTTCAACCCATTTTCCATCTGTAATTATCCACCTTCCATGGCACATCTATCTATCTACTACTTGTTATTTGTG AGTTTACTTTACACTGTAGCTAAAAGACCTCCAATGGTGTTTCGCCACGTGTACCGCTTTTTGTTATTTTTTCAAATTTT GTTTTATTTTTTAGCTGGAATCTATTACTCTAGATCTGACGATCCACATTCCCCATCTATAAATGACCATGATGATAGTT TTCAATAAGATTTAATCTAGGCCGTTGAAACTTAAAAAACTTTTGGTGAACCTCTCTCCTGCTTGCTTCGTCCTCTCTTT CACGTGGGTATCCTATCAGCGTCGCTCTTCTCCTTGATCTCCGGCGTATTCCATGGCTTCTCCGGCGGTATTAGTCACAT CCCGCCATCAACCATTACATCGGTAAGTCGTAACTAAGTCATCCTTCCATTATCAAATTTTCTCACACGCAACCTCAAAC GTCAGTTTCCGTTCGTTATAACAGTAGGAGTGGTTGAGAGAAAGAAATCTCCTCCACGATTGCAGACGCCATTTTCGCCT CCCTCCCTTGATTTTCTCTCATCTTTCGTCTTCCTTTCATCATTCACGATCTGGTAATTTAATTGAATATAAAGATTTAT TGATTTATTTCCTTTCTCACTCAAGTCCTCCTTGATTTACTCCCCAACTCCTCTCTCAGCAAACTCCTCTCTATTCCAAT TTTTTTTTTAATTGTATGATTGACTGATGGGGTTGCCATTAATGTTTGGGTTGGGGGAAATGTAATTTTTTTCTTCATTG TATGTCAGCATACGTATTTGTTTAGTAGGTGTTGTCAATTCATCTCTGATTTTGCTGAAAACCACCAATACGACACTATT GAAAGGAGTTCCCTCATCTTCATATATGTTGTTTTCTATAAATAAGCACTCCTTGCTAATCTTTTCTCACATTCAGCTAC CTGTCATTTGTGTTGAGATAGATATGTTAGGATTTTTTTGTGCTTTTGTTCTTGCATATCTTATCTTAATACCGATATCA ATGTCTCATTTAGCTGGAACTAACAGTAGATTGAAAACTCTTTGTGGTGGAAGGGATACATGGAGGATTAAAGTAAGAGT CATTCGAGTATGGGAGATGTGCCCAGTTTCTGAACCATCAAAACCATATGCAATGAGTTTGCAGTAGAAATAGTGCAGCC AAGCATATGACAAGATAAACTGTCTACCCTTTTAATTTTCAGCACTGGGGCTTATACCAGTTTTATAATTTTCTTTCAAT TTGAATGTATTGATTGTGTTTTATTCAAGATTGCATTTTTGTTCACTAGCAACTACGAGACAGGACTGTCAAAAAAAAAA TACTACGAGACAGTGTCCTCTTATGGTGAGTTATGTCACCTTTTGCAGTAATATGTGTTGTATTTGAATTTGAAATCCAT TATCACAAATGCATAAATAGGGGTGTGTTTCAGTTGCTACTTGCATTCATCTCAGTATCTGGGTTTTGTTGTAGTGTTTC AAGCTTTCTGTTTTGATCTGCATCAATTGTTGATAATTCTGGACAGGTGAACCCAGGAGTTTATGTCGAGGCTAGGAACA GGAGAAATATCATATTGAACCGAAAAATTTGCAAAAGCTGAAGTATTTCAAACTTCAAACCCACCATGGTTAGTTGAATT CCATTTTGGTTTTGATCTTTTTTTTTCTAATGCTTTTATTTTGATGAACCGTGTATTGTAAAATGTTACATAATTACATT GTTGAGGTTAGAGCAATGGGTTCATATTAAGAGGGTAAACTTTTTACAAAATGTAATAATTTGTGTCCATAAGGAGATAA GGAAATAATAATATAAGAAAATTAATATGCATAGAAAAGGAAATTGTTTATATCCGCATTCATTTTTGAATTTTTTCTCA GTGACTATGGATTTATATTAACATTGGATCATGAATTGTCATAGGTCTTCCCATTGGAAATTGGATTTCTTATTGTCTTT TTAAAACCATTTCTTTTTTATTGGATGAATTAACTGATCTGGTTTTGTCTCACAGATTACTGACATACGACAACGTCAGT ATGAGAAGATTGGAATCGGAAGCAGTTACTTTTTTAGACTTGATGGTGGTAGCATGGTTAGTACCTAAGTAGAGTAATAT GTAAATTTTAGATTTTGAAAGTTTGAAGTCTAAGATTTTTGTTTTTCGTTTGTGGGGGATGTGTCCTATTGGTGATTCCT CAAAACTATGCTATGCATCTCGTCCTAAATGATGCAGAGGTTATATTTTTGGCATGTTATTGTTTTATAGTTTTCTGTCC TACAATTACTACATTCATTTACAGGGTGTGAAAATTGAGGCTTCCATCAAGAAAAATCACATTAGTAAATACGTAAGTGA CTTGGCTGAAAATTGATTTGGATCTTTTTTTTTCCTTGCTGCATTTTCACATGCTGAAATACATGGGAGTACAGGAAAAT AACGAGAGAAGGTATTCTCTTCAATGTGTTTATTTAGTTGGAATTGCCTATAAATACTGCAAGAATTGTTTTGTTAATTC TCATTCCATCTTGCATTGCACTAGAATTTAATCATTCCTGTCTCTCATATTCCATCCTTTCATTTGTTTGTCATGATTTA TATGATTTATTAGAACTGAAACAAAATCAATGGCATCAAGGGGGTTGGGATTGGTGGTCTAGCTTGCTCATTCCCCCCCC CCCCCCCTCCCCCTTTTGGCTGCTACATTTGATGCAGTTGGCAGTATTGGCTGGGAGTTTTATTTTTCCTTTCTTAGGCT TGTGTTTCTCTGGCCTCTTGAAGGAGAACACAGGTACAATAAATAGGTAATATGTAGTGTGGTATATGTATGTAAAACTA TAAAGAGCTATGATATATCGAGGTCCTTGATGATCCTAATTATTTACCGGTCATTTTCGTGAGTAGTGTGTCATTGAATA ATATACAAATAAAGGACTACTATTTCTCATAGTTGAACTCAATATATATCTTGAAAATTCAATTGCAGAATAAATTACAC ATATAGTTTTTAATTTGAATTTAGTGTCGTATAAGGTTGTATTGTTGTTCATATATTTATTTGATTTGATTTGAAGCTAT GCAACAAAAATAAGTTGTTGAATTCAGACTATCCTTTGTTTTATTATTTGGTCTAGAAGGTGTCTTACTTCACTGTTGTG CCTAACTCTGGATCATAATGATCAAAATTATAACAAGTTGGTTTTCGAGTTGAAAGCTAAAATGTCACAATCCATATTTG AATGGATACCATAGTTTGGTGTGTTGGTTCTATGGATTTTGAGCCATAATTTTTTTGTAGGTGTTAATCTTTCAAATGTG ACTGCAGGCAGGTCGTTCTTTAGATAGCTAATTTTTTGCTCCTTGACTATGAGGTGTCTACGAGGGAAACACATTACAAC ACCTTGAGAGAGCAAACTCCATAATATTGGGATAGTGTAGGCATACTTAATTATTTAAGTTTCAGATTCTAGAATTCGGT ATTGTTTTAATATGAAAGTAATACTTAGGATCTATCAAGGAGCTCGCTCTGATATTGTACACAGATATTCTCACTTCAAG TTAGGTTTTTCAGCTACTTATGTGGCGGCATGGTTGAGTTACTAGGATATTGGAATTGTTGTTGGGCTTGTGAGAATGCA TTTTCATGATTGTTTATTATAGCATTTATTTCTTATCATCCTAAATTAATAGGACAGTTTATGTCTACTTGCTTTAACAA TCCACAAAACTAATTCCACAAAGCTACCAACTGTTGCACCTTGCACACAATGCTAGGTAGTTGTTTATATATTTTTTTTT GAGACTACTTAAAATAGAGATTACAGTTGGTATCATAGAAAGAACCCTAGAGAGGATACAAAGAAAGACATACTGTGATG CAATTTGCTTTATCTGCATTGTTTATTTTAGGGGTGTGATGCTTCAATTTCTCTTGATTCCACTCCTTTAGTTCATTGTA AAGTTGAACAGCTGAAACTATAATATGATAAACCAAATTATTTGTGGTTGTGCCTCCAGTAGTTCTATCGCCTTCTCCAT TGAAACTTTGCAGACTTTAAGTGTTCCAACTTCATTAGACCTGCAAGGTTGCAGTCAAAAGTGATACTCTAAAAGGAATT CAATTTTTTGCAGTTCTTCTGGCTAAATTGGTAATAACGAACGGGCTATACATGTTATTCCAACCTATATATAGGCTCTA TGATAACAGTGAAAAAAGGATTGTTTGAGATCAATGTTTCAACTACTTCCTGTGCTCTGGATTCACAAGGGTATGAAATA TAAAAGTAACTAAATGCAGTCTCACTCATAAAAAATTTAAGCTAAAATATAACAAATGAGAGTGGACATTTTATACTTAT ATTAAAGTAGATTAATATTTTAATTATTAGAAGAAGAAAAGACTTTTTTTGTGTTTGTACAACCTCTAAATAATAAAGGT TCAAACTATTAGTATAAAAAAAAAAGGTTCAAACTATAATTTAGTTATATACACAACCATGTTTTCATTTATTTTCTAAT TTTTTCCTAACCTTTACATTCTTCCTTAGCAATTTTCTACTATCTTTAAATTGTAAATTGAGTTTTTATTCACAGCCTAA CATATACCGAGATCGTCATATGTTAATTTAATCTTATGAATCAATATAGTCGATATAAAAATGTTTATCTCATTATAAGT TTTGCAAAAATCAAACATTAAT
CDS sequence (LotjaGi2g1v0389900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCGAACACGATCCCAAACAAAACCCTATTCAAATCCAAACGATTCACTTTCCTCTTCCAAAATCTCCTTCCGCGC GCGAAAAATCCGACGAACCCCCCTCATCACCAACAAAAACCCTAACCCAGAACCAGAGACTTCATCAAAACCCTCTCCCA CCACCATCTCAAAGCCGTTAACCGCCACCGGCGAAATCGAAGCCGCCCTCAACCACCTCCGCGCCGCCGATCCCCTCTTA GCCAACTGCATCGACTCTCTCCCTCCTCCTCACTTCTCAAACGACGTCGTCGTCACCCCCTTCTTCTCCCTCACGAAGAG CATCATCTCCCAGCAACTCTCCAACAAAGCAGCCTCCGCCATCGAATCCCGCTTCGTCTCCCTCTGCGGCGGCCGCGATT CGGTTCTCCCCGACGTCGTTTTGTCCTTGTCTCCCGTTCAGCTCCGGCAGGTTGGAATCTCCGGACCCAAAGCGACTTAC CTCCACGACCTCGCCACCAAGTACATCGATGGGATTCTCTCGGATTCTACTATCCTGCAAATGGACGATGAGACGCTGCA CGAGAAGCTTACCTTGGTTAAGGGAATTGGGCCTTGGTCTGTTCACATGTTCATGATTTTCACGCTTCACCGCCCTGATG TTCTTCCTGTTGGGGACCTCGTTGTTCGGAGAGGAGTGGAGCGATTGTATGGACTTAAGGCATTGCCTGCTCCTTCCCTG ATGGAACGATTGTGCCAGAAATGGAAGCCTTATAGCTCTGTTGCCTCTTGCTACATGTATAAGTTTATGGATGCTAAAGG GGTGTTGCCATTGCCAGCCACCACTATCACAGATCATCAACAGATGGGTGGTGGGGAGTGA
Protein sequence (LotjaGi2g1v0389900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRTRSQTKPYSNPNDSLSSSKISFRARKIRRTPLITNKNPNPEPETSSKPSPTTISKPLTATGEIEAALNHLRAADPLL ANCIDSLPPPHFSNDVVVTPFFSLTKSIISQQLSNKAASAIESRFVSLCGGRDSVLPDVVLSLSPVQLRQVGISGPKATY LHDLATKYIDGILSDSTILQMDDETLHEKLTLVKGIGPWSVHMFMIFTLHRPDVLPVGDLVVRRGVERLYGLKALPAPSL MERLCQKWKPYSSVASCYMYKFMDAKGVLPLPATTITDHQQMGGGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 58 | 58 | - | – | |
| MobiDBLite | 7 | 24 | 18 | - | – | |
| PANTHER | 9 | 272 | 264 | 2.2E-114 | – | |
| PANTHER | 9 | 272 | 264 | 2.2E-114 | – | |
| MobiDBLite | 35 | 58 | 24 | - | – | |
| Gene3D | 71 | 261 | 191 | 3.1E-63 | – | |
| Gene3D | 97 | 211 | 115 | 3.1E-63 | – | |
| SUPERFAMILY | 98 | 260 | 163 | 1.03E-33 | ||
| CDD | 104 | 262 | 159 | 1.57467E-27 | ||
| Pfam | 106 | 250 | 145 | 1.6E-18 | ||
| SMART | 109 | 264 | 156 | 1.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Base-excision repair | In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. |
Expression pattern of LotjaGi2g1v0389900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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