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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0394400 |
| Transcript ID | LotjaGi2g1v0394400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT2G23780.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q09463|RNF5_CAEEL RING finger protein 5; TrEMBL-Plants: tr|V7CIZ7|V7CIZ7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0394400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89190838..89191536) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAGTGGTTATGGCGAATCAACGCGAGCGGCTCCGAGCACATCTTGCTCGGGGAACAGTCCTAACGATGCTGGTGA TTTTGAATGCAATATATGCTTTGAATTGGCTCAGGACCCAGTGATCACTCTCTGTGGTCACCTCTTCTGCTGGCCGTGCC TTTATCGGTGGCTTCATCATCACTCCCAATCTCAGGAGTGCCCTGTCTGCAAAGCCCTCATTCAGGAGGAAAAACTGGTT CCTCTTTACGGGAGGGGCAAAGCACCGACCGATCCCAGGACTAAATCTTATCCTGGAATGGAGATCCCTCGACGTCCTTC TGGTCAGAGGCCACAGACCGCGCCTCCCCCTCCTCCGCCCGGTGCTGCCAACCCTTTTGGGAGTTATGGGTTTGGACTCA TGGGAGGTTTCATTCCCATGGCAACAGCCAGGATTGGAAACTTCACTCTTTCCACTGCTTTTGGCGGCTTTATCCCGTCT TTGCTCAACATTCACTTCCACAGCTTCCAGGACACCACAGTCTACGGGACAACCTCTGGTTACCCCTTTGGGTTTAATGC GTTTAATGGAGTAGGGAGCTCGCAAGGTTTTCCGCAGGCGACAACAGGTCAGGTGCAGCAGCAGGAGGACAGTGTTTTGA AGAATCTGCTTTTGTTGATTGGATTTCTTGTTCTTCTTACTGTCATTTTCGTTTGGTAA
CDS sequence (LotjaGi2g1v0394400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGTGGTTATGGCGAATCAACGCGAGCGGCTCCGAGCACATCTTGCTCGGGGAACAGTCCTAACGATGCTGGTGA TTTTGAATGCAATATATGCTTTGAATTGGCTCAGGACCCAGTGATCACTCTCTGTGGTCACCTCTTCTGCTGGCCGTGCC TTTATCGGTGGCTTCATCATCACTCCCAATCTCAGGAGTGCCCTGTCTGCAAAGCCCTCATTCAGGAGGAAAAACTGGTT CCTCTTTACGGGAGGGGCAAAGCACCGACCGATCCCAGGACTAAATCTTATCCTGGAATGGAGATCCCTCGACGTCCTTC TGGTCAGAGGCCACAGACCGCGCCTCCCCCTCCTCCGCCCGGTGCTGCCAACCCTTTTGGGAGTTATGGGTTTGGACTCA TGGGAGGTTTCATTCCCATGGCAACAGCCAGGATTGGAAACTTCACTCTTTCCACTGCTTTTGGCGGCTTTATCCCGTCT TTGCTCAACATTCACTTCCACAGCTTCCAGGACACCACAGTCTACGGGACAACCTCTGGTTACCCCTTTGGGTTTAATGC GTTTAATGGAGTAGGGAGCTCGCAAGGTTTTCCGCAGGCGACAACAGGTCAGGTGCAGCAGCAGGAGGACAGTGTTTTGA AGAATCTGCTTTTGTTGATTGGATTTCTTGTTCTTCTTACTGTCATTTTCGTTTGGTAA
Protein sequence (LotjaGi2g1v0394400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGYGESTRAAPSTSCSGNSPNDAGDFECNICFELAQDPVITLCGHLFCWPCLYRWLHHHSQSQECPVCKALIQEEKLV PLYGRGKAPTDPRTKSYPGMEIPRRPSGQRPQTAPPPPPPGAANPFGSYGFGLMGGFIPMATARIGNFTLSTAFGGFIPS LLNIHFHSFQDTTVYGTTSGYPFGFNAFNGVGSSQGFPQATTGQVQQQEDSVLKNLLLLIGFLVLLTVIFVW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 211 | 211 | - | – | |
| PANTHER | 1 | 222 | 222 | 3.2E-108 | – | |
| PANTHER | 1 | 222 | 222 | 3.2E-108 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 17 | 87 | 71 | 8.7E-19 | ||
| SUPERFAMILY | 26 | 83 | 58 | 1.27E-18 | – | |
| Pfam | 28 | 75 | 48 | 7.4E-10 | – | |
| CDD | 28 | 72 | 45 | 3.16685E-31 | – | |
| ProSiteProfiles | 30 | 71 | 42 | 13.64 | ||
| SMART | 30 | 70 | 41 | 1.9E-8 | ||
| ProSitePatterns | 45 | 54 | 10 | - | ||
| MobiDBLite | 84 | 122 | 39 | - | – | |
| Phobius | 212 | 231 | 20 | - | – | |
| TMHMM | 212 | 231 | 20 | - | – | |
| Phobius | 232 | 232 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0394400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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