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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0398600 |
| Transcript ID | LotjaGi2g1v0398600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G51280.1 DEAD-box protein abstrakt; Swiss-Prot: sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35; TrEMBL-Plants: tr|A0A151TW33|A0A151TW33_CAJCA DEAD-box ATP-dependent RNA helicase 35; Found in the gene: LotjaGi2g1v0398600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89573516..89575300) extracted from Lotus japonicus Gifu genome v1.2.
GAGGTAGCAAAAATGGAAGAAGAAGAAGATGATTATGAGGAATATATTCCTGTGGCCAAGCGTCGGCTCATGGAAGCTCA GAAGATTCTCCAACGCAAAGGGAAGGCCTCTGCTGTCATTGACGAGGAGTTGGAGAAATTAAGAGTAGCAGCTGAAGCTA AGCCGAGTCTTCTGGTTAAGGCATCACAGTTGAAAAAAGATCAACCCGAGATCAGTGCGACAGAGCAGATTGTTCAACAG GAGAAGGAGATGATTGAAAACTTGTCGGACAGAAAAACCCTTATGTCTGTTCGTGAATTAGCTAAGGGGATCACTTATAC AGAACCTTTGCTCACAGGGTGGAAGCCGCCTTTGCATATAAGAAGGATGTCAAAGAAGGAATGTGATTTGATTCGAAAAC AGTGGCATATAATAGTTGATGGTGGAGATATCCCGCCTCCAATTAAGAATTTTAAGGATATGAGATTTCCAGAGCCAATT TTGAAGATGTTGAAAACTAAGGGGATTGTGCAACCAACACCTATTCAGGTGCAAGGTCTTCCTGTTATCTTATCAGGGCG GGATATGATTGGGATTGCTTTCACGGGTTCTGGAAAAACTCTGGTCTTTGTGCTGCCAATGATCATGGTGGCAATGCAGG AGGAAATTATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTAATTATTTGCCCATCAAGAGAACTGGCTAGGCAA ACTTTTGATGTGGTTGAAGAGTTCTTGATACCTATGAAGGAAGCTGGATATCCAGAGATCAGACCCTTGCTTTGTATTGG TGGAGTGGATATGAGATCACAGCTTGAGATCGTGAAGAAAGGTGTTCACATTGTTGTTGCCACTCCTGGGAGGTTGAAGG ATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACATTAGATGAGGCTGATCGATTGGTGGATTTG GGATTTGAAGATGATATAAGAGAAGTTTTTGACCATTTTAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCCACTATGCC AACCAAAATCCAGAACTTTGCTAGAAGCGCTTTGGTAAAACCTATCATGGTCAATGTGGGACGTGCAGGGGCAGCCAATC TGGATGTAATTCAGGAGGTAGAGTATGTTAAACAAGAGGCAAAGATAGTTTACCTACTTGAGTGCCTACAAAAAACCCCA CCTCCTGTTCTAATATTCTGTGAGAACAAGGCTGATGTCGATGACATTCATGAATATCTTCTGTTGAAAGGAGTGGAAGC AGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCTTTTAAGGCTGGAAAGAAAGATGTGT TGGTTGCAACCGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATCAACTATGACATGCCTGCTGAA ATTGAAAATTATGTCCATAGGATTGGAAGGACTGGAAGATGTGGCAAAACTGGGATAGCAACAACATTCATCAACAAGAA TCAATCTCCCACAACATTACTTGATTTAAAGCACCTCTTGCAAGAAGCAAAGCAAAGGATTCCCCCAGTTTTGGCCGAGC TGAGTGATCCAATGGAAGACAATGAAGCAATCACAGACATAAGTGGGGTCAAGGGATGTGCATATTGTGGTGGGCTTGGT CATCGCATCCGTGATTGTCCCAAATTAGAACATCAGAAGAGCATGGCAATTGCAAACAATAGACATGATTATTTTGGATC TGGAGGTTACAGAGGGGAAATTTGA
CDS sequence (LotjaGi2g1v0398600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGAAGAAGATGATTATGAGGAATATATTCCTGTGGCCAAGCGTCGGCTCATGGAAGCTCAGAAGATTCTCCA ACGCAAAGGGAAGGCCTCTGCTGTCATTGACGAGGAGTTGGAGAAATTAAGAGTAGCAGCTGAAGCTAAGCCGAGTCTTC TGGTTAAGGCATCACAGTTGAAAAAAGATCAACCCGAGATCAGTGCGACAGAGCAGATTGTTCAACAGGAGAAGGAGATG ATTGAAAACTTGTCGGACAGAAAAACCCTTATGTCTGTTCGTGAATTAGCTAAGGGGATCACTTATACAGAACCTTTGCT CACAGGGTGGAAGCCGCCTTTGCATATAAGAAGGATGTCAAAGAAGGAATGTGATTTGATTCGAAAACAGTGGCATATAA TAGTTGATGGTGGAGATATCCCGCCTCCAATTAAGAATTTTAAGGATATGAGATTTCCAGAGCCAATTTTGAAGATGTTG AAAACTAAGGGGATTGTGCAACCAACACCTATTCAGGTGCAAGGTCTTCCTGTTATCTTATCAGGGCGGGATATGATTGG GATTGCTTTCACGGGTTCTGGAAAAACTCTGGTCTTTGTGCTGCCAATGATCATGGTGGCAATGCAGGAGGAAATTATGA TGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTAATTATTTGCCCATCAAGAGAACTGGCTAGGCAAACTTTTGATGTG GTTGAAGAGTTCTTGATACCTATGAAGGAAGCTGGATATCCAGAGATCAGACCCTTGCTTTGTATTGGTGGAGTGGATAT GAGATCACAGCTTGAGATCGTGAAGAAAGGTGTTCACATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCA AGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACATTAGATGAGGCTGATCGATTGGTGGATTTGGGATTTGAAGAT GATATAAGAGAAGTTTTTGACCATTTTAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCCACTATGCCAACCAAAATCCA GAACTTTGCTAGAAGCGCTTTGGTAAAACCTATCATGGTCAATGTGGGACGTGCAGGGGCAGCCAATCTGGATGTAATTC AGGAGGTAGAGTATGTTAAACAAGAGGCAAAGATAGTTTACCTACTTGAGTGCCTACAAAAAACCCCACCTCCTGTTCTA ATATTCTGTGAGAACAAGGCTGATGTCGATGACATTCATGAATATCTTCTGTTGAAAGGAGTGGAAGCAGTGGCTATTCA TGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACCG ATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATCAACTATGACATGCCTGCTGAAATTGAAAATTAT GTCCATAGGATTGGAAGGACTGGAAGATGTGGCAAAACTGGGATAGCAACAACATTCATCAACAAGAATCAATCTCCCAC AACATTACTTGATTTAAAGCACCTCTTGCAAGAAGCAAAGCAAAGGATTCCCCCAGTTTTGGCCGAGCTGAGTGATCCAA TGGAAGACAATGAAGCAATCACAGACATAAGTGGGGTCAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGT GATTGTCCCAAATTAGAACATCAGAAGAGCATGGCAATTGCAAACAATAGACATGATTATTTTGGATCTGGAGGTTACAG AGGGGAAATTTGA
Protein sequence (LotjaGi2g1v0398600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEEEDDYEEYIPVAKRRLMEAQKILQRKGKASAVIDEELEKLRVAAEAKPSLLVKASQLKKDQPEISATEQIVQQEKEM IENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLHIRRMSKKECDLIRKQWHIIVDGGDIPPPIKNFKDMRFPEPILKML KTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTFDV VEEFLIPMKEAGYPEIRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFED DIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIMVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVL IFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY VHRIGRTGRCGKTGIATTFINKNQSPTTLLDLKHLLQEAKQRIPPVLAELSDPMEDNEAITDISGVKGCAYCGGLGHRIR DCPKLEHQKSMAIANNRHDYFGSGGYRGEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 59 | 580 | 522 | 1.6E-222 | – | |
| PANTHER | 59 | 580 | 522 | 1.6E-222 | – | |
| Coils | 67 | 87 | 21 | - | – | |
| Gene3D | 113 | 364 | 252 | 6.9E-76 | – | |
| ProSiteProfiles | 145 | 173 | 29 | 10.153 | ||
| CDD | 156 | 361 | 206 | 4.20001E-135 | – | |
| SMART | 164 | 375 | 212 | 1.8E-56 | ||
| Pfam | 169 | 348 | 180 | 9.4E-47 | ||
| ProSiteProfiles | 176 | 360 | 185 | 29.283 | ||
| SUPERFAMILY | 221 | 504 | 284 | 4.48E-68 | ||
| Gene3D | 370 | 532 | 163 | 3.8E-56 | – | |
| ProSiteProfiles | 371 | 531 | 161 | 23.455 | ||
| CDD | 372 | 500 | 129 | 7.48938E-57 | – | |
| Pfam | 384 | 491 | 108 | 7.7E-31 | ||
| SMART | 410 | 491 | 82 | 8.6E-34 | ||
| Pfam | 548 | 564 | 17 | 2.0E-4 | ||
| SMART | 548 | 564 | 17 | 0.0053 | ||
| SUPERFAMILY | 548 | 569 | 22 | 2.07E-5 | ||
| ProSiteProfiles | 549 | 564 | 16 | 9.109 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0398600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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