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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0398600 |
| Transcript ID | LotjaGi2g1v0398600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G51280.1 DEAD-box protein abstrakt; Swiss-Prot: sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35; TrEMBL-Plants: tr|A0A151TW33|A0A151TW33_CAJCA DEAD-box ATP-dependent RNA helicase 35; Found in the gene: LotjaGi2g1v0398600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:89573531..89575300) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAAGAAGAAGATGATTATGAGGAATATATTCCTGTGGCCAAGCGTCGGCTCATGGAAGCTCAGAAGATTCTCCAACG CAAAGGGAAGGCCTCTGCTGTCATTGACGAGGAGTTGGAGAAATTAAGAGTAGCAGCTGAAGCTAAGCCGAGTCTTCTGG TTAAGGCATCACAGTTGAAAAAAGATCAACCCGAGATCAGTGCGACAGAGCAGATTGTTCAACAGGAGAAGGAGATGATT GAAAACTTGTCGGACAGAAAAACCCTTATGTCTGTTCGTGAATTAGCTAAGGGGATCACTTATACAGAACCTTTGCTCAC AGGGTGGAAGCCGCCTTTGCATATAAGAAGGATGTCAAAGAAGGAATGTGATTTGATTCGAAAACAGTGGCATATAATAG TTGATGGTGGAGATATCCCGCCTCCAATTAAGAATTTTAAGGATATGAGATTTCCAGAGCCAATTTTGAAGATGTTGAAA ACTAAGGGGATTGTGCAACCAACACCTATTCAGGTGCAAGGTCTTCCTGTTATCTTATCAGGGCGGGATATGATTGGGAT TGCTTTCACGGGTTCTGGAAAAACTCTGGTCTTTGTGCTGCCAATGATCATGGTGGCAATGCAGGAGGAAATTATGATGC CTATTGTTCCCGGAGAAGGTCCATTTGGTTTAATTATTTGCCCATCAAGAGAACTGGCTAGGCAAACTTTTGATGTGGTT GAAGAGTTCTTGATACCTATGAAGGAAGCTGGATATCCAGAGATCAGACCCTTGCTTTGTATTGGTGGAGTGGATATGAG ATCACAGCTTGAGATCGTGAAGAAAGGTGTTCACATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGA AGAAAATGAATCTTGATAACTGCAGGTATTTAACATTAGATGAGGCTGATCGATTGGTGGATTTGGGATTTGAAGATGAT ATAAGAGAAGTTTTTGACCATTTTAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCCACTATGCCAACCAAAATCCAGAA CTTTGCTAGAAGCGCTTTGGTAAAACCTATCATGGTCAATGTGGGACGTGCAGGGGCAGCCAATCTGGATGTAATTCAGG AGGTAGAGTATGTTAAACAAGAGGCAAAGATAGTTTACCTACTTGAGTGCCTACAAAAAACCCCACCTCCTGTTCTAATA TTCTGTGAGAACAAGGCTGATGTCGATGACATTCATGAATATCTTCTGTTGAAAGGAGTGGAAGCAGTGGCTATTCATGG AGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACCGATG TTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATCAACTATGACATGCCTGCTGAAATTGAAAATTATGTC CATAGGATTGGAAGGACTGGAAGATGTGGCAAAACTGGGATAGCAACAACATTCATCAACAAGAATCAATCTCCCACAAC ATTACTTGATTTAAAGCACCTCTTGCAAGAAGCAAAGCAAAGGATTCCCCCAGTTTTGGCCGAGCTGAGTGATCCAATGG AAGACAATGAAGCAATCACAGACATAAGTGGGGTCAAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGTGAT TGTCCCAAATTAGAACATCAGAAGAGCATGGCAATTGCAAACAATAGACATGATTATTTTGGATCTGGAGGTTACAGAGG GGAAATTTGA
CDS sequence (LotjaGi2g1v0398600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTCAGAAGATTCTCCAACGCAAAGGGAAGGAGATGATTGAAAACTTGTCGGACAGAAAAACCCTTATGTCTGT TCGTGAATTAGCTAAGGGGATCACTTATACAGAACCTTTGCTCACAGGGTGGAAGCCGCCTTTGCATATAAGAAGGATGT CAAAGAAGGAATGTGATTTGATTCGAAAACAGTGGCATATAATAGTTGATGGTGGAGATATCCCGCCTCCAATTAAGAAT TTTAAGGATATGAGATTTCCAGAGCCAATTTTGAAGATGTTGAAAACTAAGGGGATTGTGCAACCAACACCTATTCAGGT GCAAGGTCTTCCTGTTATCTTATCAGGGCGGGATATGATTGGGATTGCTTTCACGGGTTCTGGAAAAACTCTGGTCTTTG TGCTGCCAATGATCATGGTGGCAATGCAGGAGGAAATTATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTAATT ATTTGCCCATCAAGAGAACTGGCTAGGCAAACTTTTGATGTGGTTGAAGAGTTCTTGATACCTATGAAGGAAGCTGGATA TCCAGAGATCAGACCCTTGCTTTGTATTGGTGGAGTGGATATGAGATCACAGCTTGAGATCGTGAAGAAAGGTGTTCACA TTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACA TTAGATGAGGCTGATCGATTGGTGGATTTGGGATTTGAAGATGATATAAGAGAAGTTTTTGACCATTTTAAAGCTCAAAG GCAGACTCTTCTATTTTCTGCCACTATGCCAACCAAAATCCAGAACTTTGCTAGAAGCGCTTTGGTAAAACCTATCATGG TCAATGTGGGACGTGCAGGGGCAGCCAATCTGGATGTAATTCAGGAGGTAGAGTATGTTAAACAAGAGGCAAAGATAGTT TACCTACTTGAGTGCCTACAAAAAACCCCACCTCCTGTTCTAATATTCTGTGAGAACAAGGCTGATGTCGATGACATTCA TGAATATCTTCTGTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTT CATCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACCGATGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAG CATGTCATCAACTATGACATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGAAGGACTGGAAGATGTGGCAAAAC TGGGATAGCAACAACATTCATCAACAAGAATCAATCTCCCACAACATTACTTGATTTAAAGCACCTCTTGCAAGAAGCAA AGCAAAGGATTCCCCCAGTTTTGGCCGAGCTGAGTGATCCAATGGAAGACAATGAAGCAATCACAGACATAAGTGGGGTC AAGGGATGTGCATATTGTGGTGGGCTTGGTCATCGCATCCGTGATTGTCCCAAATTAGAACATCAGAAGAGCATGGCAAT TGCAAACAATAGACATGATTATTTTGGATCTGGAGGTTACAGAGGGGAAATTTGA
Protein sequence (LotjaGi2g1v0398600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAQKILQRKGKEMIENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLHIRRMSKKECDLIRKQWHIIVDGGDIPPPIKN FKDMRFPEPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLI ICPSRELARQTFDVVEEFLIPMKEAGYPEIRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLT LDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIMVNVGRAGAANLDVIQEVEYVKQEAKIV YLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSPTTLLDLKHLLQEAKQRIPPVLAELSDPMEDNEAITDISGV KGCAYCGGLGHRIRDCPKLEHQKSMAIANNRHDYFGSGGYRGEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 514 | 484 | 1.9E-221 | – | |
| PANTHER | 31 | 514 | 484 | 1.9E-221 | – | |
| Gene3D | 47 | 298 | 252 | 5.2E-76 | – | |
| ProSiteProfiles | 79 | 107 | 29 | 10.153 | ||
| CDD | 90 | 295 | 206 | 3.70147E-136 | – | |
| SMART | 98 | 309 | 212 | 1.8E-56 | ||
| Pfam | 103 | 282 | 180 | 7.4E-47 | ||
| ProSiteProfiles | 110 | 294 | 185 | 29.283 | ||
| TMHMM | 120 | 142 | 23 | - | – | |
| SUPERFAMILY | 155 | 438 | 284 | 3.31E-68 | ||
| Gene3D | 304 | 466 | 163 | 3.1E-56 | – | |
| ProSiteProfiles | 305 | 465 | 161 | 23.455 | ||
| CDD | 306 | 434 | 129 | 2.74148E-57 | – | |
| Pfam | 318 | 425 | 108 | 6.4E-31 | ||
| SMART | 344 | 425 | 82 | 8.6E-34 | ||
| SMART | 482 | 498 | 17 | 0.0053 | ||
| Pfam | 482 | 498 | 17 | 1.7E-4 | ||
| SUPERFAMILY | 482 | 503 | 22 | 1.8E-5 | ||
| ProSiteProfiles | 483 | 498 | 16 | 9.109 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi2g1v0398600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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