Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0414700 |
Transcript ID | LotjaGi2g1v0414700.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | AT hook motif DNA-binding family protein; TAIR: AT2G35270.1 Putative AT-hook DNA-binding family protein; Swiss-Prot: sp|O82166|AHL21_ARATH AT-hook motif nuclear-localized protein 21; TrEMBL-Plants: tr|A0A1J7GT77|A0A1J7GT77_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91251295..91257716) extracted from Lotus japonicus Gifu genome v1.2.
GGGTAATGATATATACACACCTCTTTTTTTATACACTTCATTTCCACCTATTTTTATTTCTATCTCTCTCATCTTATTAT CTATCACATCTTATACTTTCTCACTCTAACTTTTTATTTTCTTCCTATCTCTCTCTTCCTCCACCTTATTCCACCTCATT TTGAGGTGTGAATAAATAATTATTGATTGTGATTTTACACCGGTGAATAGTATACATCAAAAATTAAACTCATCGTGAAT ATACAAGTTGGTATGTAAAGTACAAAGTACAAACCCATTATTTTATGCTATATATATTATTTAAACTTTGGTTGCCCAAA CAAATGACTGTGTCTGGGGTCTTTAATTTGTCTCCTTCATCTCTCTCTTGCTTTGCTTCTTCTTCTTCTTCTCTTCAGCT CTCTTTCTACTCCCTTTTCTTTATCTGCACTCTCCTTCTGTCTGTTTATCAATTCCTTTTCCATCAACACAACTTTTTTT TATATTCACTCCACTCACCACTTCTCTTAAAATAAACCATAAACACAAAAGCAAGGGTTTTTTAAAACATAGTTTGCTCT ACTATTTTTTACTAATATCAATATTTTTTTTCCTTTTTTTATGAATAAAAATTGTATATCTCTCTCTTCGTTTGATATGT CCATGGCTGGTTTGGATTTAGGCACACCATCATCATCACACTTCCTTCAAAACCTCCACAGAGAAGATCACTTCAACCTT CAGCAGCAGCAACAGCAACAACCACAGGAATCGGAGGAAGAACCCAACCACAACTCCGACCCGTTTTCAGCTGAAGATGG ACCACGCTCCGGCGACTTGGTTGGCCGTCGACCACGCGGCCGGCCACCGGGGTCGAAGAACAAGCAGAAGCCGCCGGTTA TCATAACTCGGGAGAGCGCCAACACGCTCCGGGCACACATCCTTGAAGTTGGGAACGGCTGCGACGTGTTTGACTGCGTC GCCACCTACGCGCGGCGGCGCCAGCGCGGGATCTGTGTGCTCAGCGGCAGCGGCACCGTCACCAATGTCAGCCTGAGGCA GCCGGCGTCTGCGGGATCCGTTGTTTCCCTCCATGGAAGGTTTGAGATACTGTCACTCTCGGGATCTTTTCTGCCGCCGC CGGCTCCGCCGGGGGCAACCAGCTTGACGATTTACTTGGCCGGAGGGCAGGGGCAGGTAGTTGGTGGGAGTGTGGTGGGG GAGTTGACCGCGGCGGGTCCCGTGATTGTGATCGCGGCCTCGTTCACCAACGTGGCTTATGAGCGGTTACCTTTGGATGA GGAAGAAGAACAACAGCTTCAGATGCAACAACCACCTACGCCTGGTGGTGGTGGCGGCGATGTGGTGACCACCAACGCGT TTCCAGACCCGTCGTCGGGGCTTCCGTTTTTCAACTTGCCGCTGACGACGGCGATGCAGAGTAATGTTTCATTGCCAGCT GTGGATCATGGTTGGGCGGGAAATTCGGCGGCGGCACGTTCTTCATTTTGAGGGTGTTTGTTTGTTTTGTTAATCTAATG TGGTTGAATATTGATCCATCGCTAGTTGATGATCAAACTATGGTGAATTGAGGTCAGCAAATTCATGCACTTCATTTATA TGATGATATAATTTAGGTCATCTTCATCTTGTTTTCTTGTTTCTGTTGCTCATGGATTGTAAGATGTAGTAGTGAGTTTG AGTTGTACTTGTTCGACTTAATTAATTGGTGTACTCTCATGGGTTTTGGTATATGAATATCGATCTTTGGGATTATTCCC TTGTGTCTACTATGTATATGGTGAACTAGTTATACATCTTAGTCAGTTTCTTACTTTTTCTGCTTTAAATGTTAATTTGA GGGATTCAGACTTTAGACAAGCATTTACACAGGCCACATGGATGGCACACCTTGTTGTCGTTAAACATGAAGCAATATAG TAGCTCCCATACCAACTAGCCATTATTTTTAGATTTTTCACCTTTCTACTTCACATCTCAACTTGCAGGTTGGTTTCTAT TTTAAATACCATCCAGCTAAAAACAACTTCCCTCCATGGTTTAATGTATCAATAATTAAATATCTCTCTATATATATAGA TATATCTATATTTTGTATGTATAGGTACTTAAGTTTTGGCATTGAATTTACTGTGATTAATTTATTCCTGGAAGAACTCA TCAACAATCGCACATATATAAGATCAGATTTAATTATATTTGCTTGATCAGACTGAACTATAAATCACACTCTTGGTTCT GCATTGCTTATAAAAAATAAAAAAACTCTTGGTTCTACATTTATCAGTCTTCACAAGTGTACTGGTATGGGCGTATCAGC TTTATGTATTGGGCTTCCCATTATTGGTACAATTATTGGGCCAGGCGACCCATGATCCCTAGCGGGTCAAAACCAAGCTA TAAAAGACAGACACCACCCAAGCGGTGGGGGATCTAACATTTTCACGCATTTTTCATCTTGTTTGTTCCTTATCGCTCTC AATTGCTTAGCCCTTGCTTGATTTTTCATTGGTCTATTTTACATTCCTTTCGTTCTAAATCGATTAGCCCGAGAGGATAG TTCCATACCGGAATATTGGCGCCCACCGTGGGGCCAGGTAAAACTTCCCCACTTCCACAAATTCATCCGTCACCGGATCA TCATGACAAGCTTTTCTCCAACCACCGCTTTCATCCTTTTCCCTTGCCAATCCTCATCTGGAGTTCAAATATGTTATCTC GCATTTCATCATTGGTCACAAGCAAGTAACTAAGTTTCATGGCAGCGTACAACCGATATCAATCCTCTTCTCTGAATTTA CAATCGCTAAGCACCATTTTTCTCTTCATCATCCTCTGAGCCGTCATCATCGATCTGCCACCAAACTACCCATAATTCAC AAAACCAGAAAACAAAATAGATCGAGGAAAAGGGAAGGGGACGAAGAGGAGAACAGAAATTCGCAGCGGCGCGGTCTCCA ACGGCGGGGCGGAAGTTCAGGCGCGGGCGAAATTGATGCTTGACGACGGGATATACAATTTCAACCGCCAATTAGGAGTT GAAGCCATCACTTTTGAGTTGAAACCGCCCACTCAATATCAACCGCCAACTCTAAATTTAATAGCCATTTTGTCTCAACT GCCACTTCGGAGTTGGAACCGCTCATTTTGTCTCAACCGCCATCTCTGAATCGAAATTGTTCATACTTGCATATGAGTTG CATCAAACCAAATTGATTCAGGACCATTCCAATAGATCCTTGTTTCTTCAAATTTTTCTTCTACTTTTTGTTTCGGTTCT GTTTCCATTAGATTTGTGCTTTGATTATCAATAGTTTAAAATTAATTTCATCATTCTCTTCTGTGCTTTTGATATGAGAC AGAGAGGAGCATGGTAGATTAAGAAGAATAAGCCTATGAGTTGGAGCATGCCAACTGTTTGACGAAATGCTTCAGAAAAG CATTGTTTTTTTGCATGCCACAGTTTTAGAATCGGCACAAAGAGGATGACTTCTTTCCTGTTGCTGGTAGCGGTACATCC AGTGTCGGCATAGCGGAGAGTGATTGCAAACAAAATGGCAGATTATTGATTTTGGTTGAGCAAACTGAGGCGATGGTGAC TAGGCGAACTGATTGACATTAGTGTTCGAACAATGCCAAGAACTGGAGTCCAAATGACATGTTGGGTTTGCACATTCTAA CTTATCTTTATCTGAATTTTTATGTGTTGGATGAAATGTTTATGTGCTTGTGTTAATCAGTAATTGAATATGAGTCTGAA TGTATGTTGACATGTTTGAGTTCATTATGTGAAAATTATGGTGAAATTAATCTTATCTGTATTGTGAAGCTATTAAATAG AATGAGTGATCATTTGATTTTGGTAATTGAAGCATGTTAACCTTCTTTCCTAAACAATGCATATTTCTTATGCTTTGTGC TTGCTGAACAGTTTTTAAAAGTGTTTAAAGGGAAATATTCTTGAACCTGTTATTTTAAGCTCTACGTGCTATGCTACTTG TTTTGCTGTGATTTTGATTCTGATGTTTGTGTTGCAAAGCATGATTTGCTTGTTTCTGCTATTTATGCTTTGAAGCATGA TTTGCCATGAGTTGGGCCAAATGAAAGAAAGTGGCAGAGTAGGCTGTAAAATGGTCTTTGATACAGGAAAAGTGAGTGTC TTAAGGACATTGGTTACATTTTGAACTTCATGCTTTGATAGTCATTAGTTAATTAGTTAGTTCTTTTACTTAATTGTGCT AAGTACTTCCCTATTAATGTTCATAATGTTTTAGTCTTTCCTCACTTATTGCGCTCATCCATACCTGCTAGTTTTGTACT ATCAATTATCCTGTCAATGCCATTCAGTTTTGAAGTAAATGGACATTGTATCAAAACAGAATTATGCTTGGTTATATTTG TTTTAAATATACACGCCTGTGCTGGAACTGATTTTATTTCGGATACTTTATTTAAGCTGAAAATCTGCACATAGAGCACA TATTTCAGGATCTTAAAGAGGGTGAAAATTCCAAGTTTTCCACCATGCTTGTATTTTAACATTTTATTGGATTATTTAAC TATTGCAATTGTGAACTCAGAAAAAGCTCCTGGGAGTTACTGCTTCTCAGAATCTAATACAGTTTACTTGCGAAAATGAG GATTGTGAAAGCCGCTGGGTAAAGGAATACTTCTGGCACATCGACTGTTTTAGGAAGCTCAATGTCAAGGTTAGACGCAA ATTGGACCGCCCTTCCAAAGTCTCAAAGGCGCAAAGATATGGCATATGTGTTGGTGACTTTCAAAAGTGTCCTTCGCCGG GAGGTTGGTTCGCTTATCAGCCCCTTCATGGCAGATTTGATTTGTTTCATGCTATCCGTAAATCAGGTGATGAGTTGATT AAAAACAGTCAAAGCATAAAACATTATGTACAGAAAAAGAAAGGAGCAACAGGTATGCACTCTTTTCTCTACCCCAGGCG GGAGAGTTTTTAACGAGGCATAACCTTTTTAAAAATGTTCAAGGGCGTAACATTTCATATGCACTCTTTTCTCTACCCCA GGCGGGAGAGTTTTTAACGAGGCATAACCTTTTTAAAAATGTTCAAGGGCGTAACATTTCATTTCTTCCCATAGCGGAAA CTTATCAACTAAGGTCTATCAATTGGGCGACGTCAGACAATTGAGAAAAGAGTAAGTCTCTTAAAACAAGAGCATTTGAC CACGAATTCATAAGCACAGTCTTAAATTGGATTTAAGCTTGTCCAAAATAAGCACAAGTCTCCACGCGAGCATATTAATG AAATCAAATATCGTGACTTTGATTTCCATGAATAACTATGTCAAAAATAAAAATTTTGACTAAGTTATATACACAAAGGC CTTATGATTCCAAAGTAGTTGATTAAGTTTAAACTTTACAAAATTTCTGAGATTTACTCAAGAGTATTTTACTATATACA GTAAAGAAAGGCGGGATGATTCTGATGAAAAGTCGTATTCGAACTTGATAGAAAAATGATAAGATTATTGGGCGATATTA AACAATATCGTCCTTTGGGTGATATTAAACAATATCGTTTTTTATGATAAAGTTCATCTTACAAAGGATGCATTACACTG AGCATAGATGAATGTGCAAGCGATGTGAAGTAAGTGTGTTCCATATTATTGATTTACATTTAAGTCTTTAACTTTTATTT TGTCTAAGTTTCAAATTATTGTGCATTATTACTTGTGGTATTATGAGAGCAGGTTGTGATCATGGTTTAGGGGAAGAGAA AATTAATCATGATAATGACAGTGAGGCTGTGATTGATGCGAAGAGACGATTTGGGTTGCACACGCTACACAAAGATCAAG AAGTAACAACATAAGTTGAAATGACAAAGGAATGATTACTTAGCTTTTTTATGCCTTTTAAAATTTTGATTTTGGAGCCT GTGTGCCCATTATTTCCTTTGCACATTTTGGGCGTGTCAATTACTTGTTAGTCTTTGTATAGTGTTGGGTGAGTTGATTA CTTGTGGGCTTGATCAGAAGACACACTTCATCTTAAAGTTTTTAAGACTTGGTGTCTTGTGGGCTTGTGTACTGGTATGG GCGTATCAGCTTTATGTATTGGGCTTCCCATTATTGGTACAATTATTGGGCCAGGCGACCCATGATCCCTAGCGGGTCAA AACCAAGCTATAAAAGACAGACACCACCCAAGCGGTGGGGGATCTAACATTTTCACGCATTTTTCATCTTGTTTGTTCCT TATCGCTCTCAATTGCTTAGCCCTTGCTTGATTTTTCATTGGTCTATTTTACATTCTTTCGTTCTAAATCGATTAGCCCG AGAGGATAGTTCCATACCGGAACAACAAGCTAGTTATTGGTAAACTCAATTGCCTAATTAATGTATGTTTATCGTGGCTA GCTAGCAGTCATATCACATGTC
CDS sequence (LotjaGi2g1v0414700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAAAAATTGTATATCTCTCTCTTCGTTTGATATGTCCATGGCTGGTTTGGATTTAGGCACACCATCATCATCACA CTTCCTTCAAAACCTCCACAGAGAAGATCACTTCAACCTTCAGCAGCAGCAACAGCAACAACCACAGGAATCGGAGGAAG AACCCAACCACAACTCCGACCCGTTTTCAGCTGAAGATGGACCACGCTCCGGCGACTTGGTTGGCCGTCGACCACGCGGC CGGCCACCGGGGTCGAAGAACAAGCAGAAGCCGCCGGTTATCATAACTCGGGAGAGCGCCAACACGCTCCGGGCACACAT CCTTGAAGTTGGGAACGGCTGCGACGTGTTTGACTGCGTCGCCACCTACGCGCGGCGGCGCCAGCGCGGGATCTGTGTGC TCAGCGGCAGCGGCACCGTCACCAATGTCAGCCTGAGGCAGCCGGCGTCTGCGGGATCCGTTGTTTCCCTCCATGGAAGG TTTGAGATACTGTCACTCTCGGGATCTTTTCTGCCGCCGCCGGCTCCGCCGGGGGCAACCAGCTTGACGATTTACTTGGC CGGAGGGCAGGGGCAGGTAGTTGGTGGGAGTGTGGTGGGGGAGTTGACCGCGGCGGGTCCCGTGATTGTGATCGCGGCCT CGTTCACCAACGTGGCTTATGAGCGGTTACCTTTGGATGAGGAAGAAGAACAACAGCTTCAGATGCAACAACCACCTACG CCTGGTGGTGGTGGCGGCGATGTGGTGACCACCAACGCGTTTCCAGACCCGTCGTCGGGGCTTCCGTTTTTCAACTTGCC GCTGACGACGGCGATGCAGAGTAATGTTTCATTGCCAGCTGTGGATCATGGTTGGGCGGGAAATTCGGCGGCGGCACGTT CTTCATTTTGA
Protein sequence (LotjaGi2g1v0414700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKNCISLSSFDMSMAGLDLGTPSSSHFLQNLHREDHFNLQQQQQQQPQESEEEPNHNSDPFSAEDGPRSGDLVGRRPRG RPPGSKNKQKPPVIITRESANTLRAHILEVGNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSLRQPASAGSVVSLHGR FEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEEEQQLQMQQPPT PGGGGGDVVTTNAFPDPSSGLPFFNLPLTTAMQSNVSLPAVDHGWAGNSAAARSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 15 | 290 | 276 | 5.9E-132 | – | |
PANTHER | 15 | 290 | 276 | 5.9E-132 | ||
MobiDBLite | 24 | 52 | 29 | - | – | |
MobiDBLite | 24 | 94 | 71 | - | – | |
SUPERFAMILY | 100 | 235 | 136 | 5.49E-34 | – | |
ProSiteProfiles | 100 | 239 | 140 | 39.214 | ||
Gene3D | 103 | 238 | 136 | 3.4E-9 | – | |
CDD | 104 | 187 | 84 | 2.75029E-20 | ||
Pfam | 104 | 217 | 114 | 9.2E-29 | ||
MobiDBLite | 227 | 248 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | AT DNA binding | Interacting selectively and non-covalently with oligo(A) and oligo(T) tracts of DNA (AT DNA). |
Expression pattern of LotjaGi2g1v0414700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…