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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0424200 |
| Transcript ID | LotjaGi2g1v0424200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated 1-1-like protein; TAIR: AT2G45140.1 plant VAP homolog 12; Swiss-Prot: sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2; TrEMBL-Plants: tr|I3S2M8|I3S2M8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0424200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92215613..92224477) extracted from Lotus japonicus Gifu genome v1.2.
CTAGACAGATTGTTTTTTAAGAAAAAACCACCTGTTCTGTAGCTGTCATAATCGCAATTCCCTTTTTGGTCTCTCCTTTA CTCTTTTCCTTCCACCGTCTCCTTTCCTTGATCCCTCCGTCCATCTCATCTCATCTCATAGGGCCAGGGGAATCTCCGCA CGGCACAATCCCCATTCCTTCTCCGATCGCGATTCGAAGATGAGCACTGGCTACCTTCTCCGCATTGATCCTCTCGAACT CAAGTTCACCTGTACGTTTTTCATCGATCTCTTTTCTCATCTTCTAGGGTTTCTTTCTCCTCTGTTTGATTTTGGTTTTA CTTGTTCCCTGTTTCAGTTCAGCTGAAGAAGCAGATCTCATGCTCTCTTCAATTAACAAATAAGACTGATGAATATGTTG CTTTCAAGGTATCATTCTTTCATTTCACTTTCAACTTTCTGTGTTTGATTTTGGAGTACGATTTCATTGCCCAACCTATA AGATCTGTTGAATTTACCCTAATTCGTTCTTACCAGATTCACATGTTACAATTGGTTAATTTGAATTGTTTTTTTGGTTT TCATTCATAGGTGAAAACGACAAATCCTAAGAAGTATTGTGTTCGTCCAAACACTGGGGTTGTCTTGCCGCGTTCTACAT GTGATGTTATAGGTACTGTTAGAAACAATGATTGATTGAATGATTCTTCTTAGATTCAATGCTTGAAGATTACAGTTTTT ATACAAGTTCCTAATCAGTGAAAGATAAAGAAAAACTAACTAACTGAACTCTAACAAACTCTAACTAACTGTAACTAATT GCTAACAAACTAACAAACTCTAACTGACTTGACTTGTGAGTCAAGTTGCTAATTTAAATTACAATAATTCCAATACCCTC CCTCAAATTGAGGCATATATGTCTCTAAGACTCAGTTTGGAAACAAGATGATTGAACTGCGTTGGATGAAGTGCTTTAGT ATGCAGATCTGCAAGTTGGGCAGTAGTTGGAATTGGCATGAGTTTGATGATCCCTTGTTGAATTTTCTCCCTAACCAAGT GGCAATCAATTTCTATATGCTTAGTCCGCTCATGAAATGTGGGGTTCTGAGCTATATGAATGGCCGACAAGTTATCACAG TAAAGAGCTACAGGAGACAACATAGGATGATGTAAATCTTTCATCAGATAAAGTAGCCACTGTATTTCACAGGTTGTGGA TGCTATTGCTCGATATTCAGCTTCAGATGAGGATCTGGAAATAGTACTTTGCTTCTTGGATTTCCAGCTAATTAAGGAAG TACCATAAAAGATGTTGAAACCTGTGATTGACCTTCGAGTATCAACACATGATGCCCAATCAGAATCACAAAACGCTGTA AGTGTATGTGCTGAAGTCGAAGAAAAGAATAAGCCCTGACCAGGATGTTGTTTGATATAGCGAAGAACTCTAAGTGCAGC ATCATGATGCTCTGTCATAGGATTAGATAAGAACTGACTAAGAGTGCTCACAGCAAAACACAGATCAGGTCTTGTGTTTG TGAGATAGAGTAGCCGACCAATCAACCTTCGATAAGCAAGAATGTCTGAACAAGGTTGGCCCGAGCTAGCTGAAAACTTG GTTCCTGGTGTCATTGGAGTAGCAACTGGTTGACTTGCTAACAGGCCTGCATCATCAATCAGCTCTAGGGCATATTTCCT TTGTGACAAGACTAAACCTTCCTTGGATCTTGCTACTTCAATACCAAGGAAAAACTTGAGAGCTCCAAGGTCTTTGATCT TGAATTGTTGATCCAAAATATGTTTGACATGTTGTATTTCTTCAAGATCATCTCCAGTCAATACTATATCATCAACATAG ACAAGCAAGATGGTAAGGTGGTTGGCTGTGTGCTTAACAAACAAGGAATAATCTGACTTGGATTGTGTGTAACCAAGTGA GATCAAAGAGGATGTAAGCTTGGAATTCCACTGTCTGCTAGCCTGCTTTAGCCCATATAGAGACTTGACCAACTTACAAA CTTGACCAGAATGACTTGGCTTATATCCTGGTGGAAGAGACATGTAGACCTCTTCATCTAAATGTCCATGCAGAAATGCA TTATTAACATCCAGCTGTTGCAAGTGCCAGTTATGTGATGCTGCCATAGCAAGAACTAATCTCACTGTGGTCATCTTAAC CACTGGTGAAAAAGTCTCAAAATAATCAAGACCATGCTGTTGAGTGTAACCCTTGGCTACTAACCGAGCTTTGTACCTTT CAATGCTCCCATCTGCATGTCTCTTGATCTTAAAAACCCATTTGCAACCAATAGGGTGTTTCCCAGGTGGTAAATCAGTT AGAACCCAAGTCTGAGTATTTTCTAGAGCAGTAATTTCAAGGTCCATGGCATTTCTCCAACATTCATGCTTCACTGCTTG ATTATATGTATGAGGTTCAACTTCCTGAGAAACAGCTAAAGCAAACCTTCTATGTGATGGTGAGAGTGTGTGATAGGATA TGTAATCTGAAATAGGATAAGAGACACCTGAAGAGGAAGAGGCCTGAGAAGAAGTATGAGCTATGTTACAATGATAATCT TGGAGATAAGAAGGTTTTTGTGTTTGTCTAGTGGAATGTCTCAAGGCTGGTGGCTGTGGTAACAAGGGTGATGAAAAGGG TGAAGAAATGATGGTAGTATCTGGCTCGAGTTGAGCTGGCTGTGGGGGAGTGAAATCATCTGAGGAAGAACTAAGATCAG TAGGGAGTGAGGGAACAGGGAACAAAGAAGATAGTGATACTGTGTCAGTTGCTTGAAAAGGAAAAACATTTTCATAAAAA ATGACATTTCTTGAAAGAAAAACTTCTCTAGTGTTCAAATCAAACAAAAGATATCCCTTGACCCCTTCTTTCTGTCCTAG AACAATGCATTTCCTAGCTCTTGGTTGAAACTTTGTTCTATGTGCAGTAAGGGAAGTAGCATAACATAAAGAACCAAAAA CCCGTAAGTGTTCAATGTCTGGTTTCAGGTTATGCAAAATGATGAAAGGAGATGAGTAAGATAAAACCTTGCTTGGTAAA AGATTCATTAAGTATACTGCATGAATCACAGCAAAAGACCAAAATTCAAGGGTCAAGTTAGATTGCAGCATAAGAGCCCT AGCAATATTCAGGATGTGCTGATGTTTTCTCTCCACAACACCATTTTGTTGTGGAGTTTCAACACAAGATAATTGGTGTT GAATTCCATGCTGTGAATAAAAATCAGTCATGGCAAATTCAACCCCATTATCTGATCTCACTATTTTAACAAGAGATCCA TACTGTCTCTGTGCATAAAGGATAAAAGTTTCCGAGCCTCTGATTTTGCTTTCATTAATTTTATCCAAGTAAACCTAGAC TTATCATCTACAATTGTGAGGAAATATTTGGCTCCTGTAATAGATGCAACACTGTATGGTCCCCAAATATCTACATGCAA CAATTCCAAAACAGTTCCAGAAATAGTATGGCTCAAAGAAAAAGATAATCTTTTTTGTTTAGCAAAATGACAAGTATCAC AATTCTTACATGGAGAAGTAGTAATAGCAGGGTACATTTGTTGCAAAGAAATATAACAAGGCTGAGATGGATGTCCTAAC CTATGATGCCATATATTTGGCAACTTATTAGAAGAAGAAACAGTACTCATGTTTACAGAATGGAAAGTATGAAGTGGTTT GAAACTAGTAATAGGTGGAAGCTCCATGATGTATAGCCCATCCTTGATCTCAGCTCTCCCAATCATCTTCAAAGTGGTCT TGTCCTGAATCAAACACAAGGAATCAGTGAAAATCAATCTGTGATTTAGTACTTTGGTAAGCTTGTGTATAGAAACAAGA TTGACAGAAAATTCAGGTACATAGAGAACATTATGTAAAGTCAGGGTAGGTGAAAGAAATACTGTCCCTAAATGGTTTGC AATAGCATGAGCTCCATTAGGCAAAGATACAGGTACAGGTTTGATTGAGTAGTAAGAAGAAAAGAAAGATAAGGAAGAAG CAATGTGATCAGTGGCACCTGAATCCATGATCCATTGAGAATTGACCATATCTATGTTATTAGCAATAACATTGTGACTA CTGACAAGGTTGGAAGCAGCAATAGGCTTAAGGTTGGGGGCTTGTGAAACTGCAGTGGGCTTAGATTGAGGAAGTAATGC CAGTAAACCTTGAAGTTGCTCTCTTGTCAGCTCAAGACTTGAAGAAGGAGGTTCATCTTGATCTGAAGAAGAATGTGAAT CACCTCCTGAAGTTGTAATGTAAGCCTTCTTTGGCTTATAACCATTTGGAAAGTTGGAAGGATAGCCATGCTTAAGGAAG CATGTTTCAACAGTGTGATTCTGCCTTCCACTGTGTGCACAACCTCTGCACATTGGATTTACTTGAAGAATACTGAGAAT TCGACCTTCCCCTGTTGGAATTAGAATATGTGCCTTGTGTATTCCCAGTATGAACTGCCATAGCTGCTGGCTCAGGAAGT ACTCCAATGCCTAAGTGTCTTTCTTGTTGTATTATCATAGAGAAAATCTTAGACAAAGTTGGCAAAGGTTCCATCAACAA AATCTGAGATCTAGCAGCAGCAAAATTATCATTCAAACCTCTAAGGAAACACAGCACACAATCATTTTCCCTATATTGCT TGAAGATTTTCACAGCCTCACAACAGCACGCATGAGGGGAAACACAAACAGGAATTGGCCGATAATTGCATAGTTCATCC CACAGAATCTTCATCTTGGTGTAGTAAGCAGTAATAGACAAATCACCTTGATTTAGAGAATACAATTCATGATGCAGGTG AGAAATTCTTACCGAATCTCCCTGCGAGAAACGATCTTTCAGATCTTGCCAAGCTCCAGAAGCTGTGTCAATCCAGATGA TGCTAATTGCTATCTCTGGAGAAACCGAATGATTAATCCACGAAAGCACAAGATTATTGCAGCGCTTCCAAGCTGAAAGC ATAGGATCATCATCGGAGAGCTTTGCAATCGAACCATCAGCGAAACCAAACTTATTCTTCATCTGCAATGACATCGCCAT TGCACGAGCCCAGCCATGGTAATTGCTCCCATCAAGAACTGGAGAAACGAGAACAAGTGAGGGATTCTCGTTTGGATGAA TGTAGTAATCGTGAGTCGAGTCTGTCAAATTTGCTCGAGTAATCGGAGCCATTGTTGAAGGTAGAAGAAGCTTCAAAGCT TTATGCAGAAGAATCAGTGAAGAGAAGTGAAGAAACGGCAAAGAGAATGCCGAGAAAGTGCTCGAGAAAATCTCTGAGAA AGTAGAAGAAGCTTGAGAAAATCTCTGAGAAAGTAGAAACAATAGCTAAGAGAATGCCAAGAAAGTGTTCGAGAAAATGT CTGAGAAGAAAAGAAAAAAAAAAAAAGATAGGTAACCGTCACCAAGAAAATTCCAACAGAAAAGGAATTTTCCCGAGAAA ATCAGAGACGAAGAGAGAAAGCGGAAGCTAAAAGCTCATGATACCATGTTAGAAACAATGATTGATTGAATGATTCTTCT TAGATTCAATGCTTGAAGATTACAGTTTTTATACAAGTTCCTAATCAGTGAAAGATAAAGAAAAACTAACTAACTGAACT CTAACAAACTCTAACTAACTGTAACTAATTGCTAACAAACTAACAAACTCTAACTGACTTGACTTGTGAGTCAAGTTGCT AATTTAAATTACAATAATTCCAATAGGTACCGCCGACGCGATGCCGCCACTGAATGCATTGATGATATTATTGTTTCCTG AGTTTAATTTTTATTGTCAATCAATGGCTTTGCTTGATGATATTGCTTGTGTTTTGCAGTTACCATGCAAGCGCAGAAGG AAGCTCCGCCAGATATGCAATGCAAGGATAAGTTTCTTCTTCAATGCGTAAAAGTAAATGATGGGGTCTCCCCAAAGGAC ATCACTGCAGAAATGGTACAACACTTCATGCTAGTTACAGTTGCAACTTGCTTTTATTCTTTTTATCTTTTTGTATAACA TTGGGTATTGGGGAGTTAGGATCGGGTTGATTAGTGATTGGTTAGTAAGTTGTTAGTTGTTATAAATTAGAATTAGAACC AAGCTTACTAGTTTTGAAATACATGCTACTATGGTAGTTAGAGTAGTTATAACTGCACAGGTAGTTAGCTTTCACCTTCA TGTATATAGCATTGTATCAACTCTAGATCAATGAGAAATTACATTTTCCTTTCTCCATTTCCTGGACTCTCTACGTCAAT ATTGGGTGAAATGATGAGAGTTGTGTCCGTGTGATTTTTTAGTTCAACAAGGAATCAGGGCACGTGGTTGAAGAATCCAA ATTGAGAGTGGTGTATGTCTCTCCACCTCAACCTCCGTCTCCAGTTGCGGAAGGTTCTGAGGAAGGCTCATCGCCCAGAG GTTCTGTTTCTGAAAACGGAAATGTCAATGTCTCAGACTCAGCAACAGTAAGTTCTAAACTTGTTCCTAGTTTAGATGAA TCTTTGATTTTTCTCTATAAAAAAATCTAATGATACCAACCGGGGTATATTTCTTTTGGGTATTGAAGATTGCCAGAGGA TTTACTGAAAGACATGAGGCTACAGATAAATCTGCAGAGGTAATGCAAAACTACTTTTTTTAAGGATATTGTCTGTTTGT CTGTCAACATGCATTTTGAATTGTGTATAACTATAGTTTTAATTAAATAAGTATCGAAGCATTATGTTGAATCAATGACC TATCTATCTTTGACTAGCAGGACAAAAAGAAAAGTTTCTTATGATTTTTGGTTGGAGGCTGTAATTTATTTTGTTTCTTA AAGCTTGTAACTTCAGATTGTTTTCCTTCTCTGTGCACTCTCGCTCAAGCTTTGGTGTGTGTGGACTTTATTTTGATTAT AGTTGCTTTGTTGCAGGCAAAAGCTCTTATCACGAGGCTGACTGAAGAAAAGAGTAATGCAATTCAACAAACTAACAAGC TTCGACAGGAATTGGTGAGGGTTTACAAAATATATATTGTAGATAACTATTATCTCTCCATCTGACTGAATAAAACCTAT CTCTCCATCTTACCCCTCTTCATTCAGGAAAAAAAGAAGAGAAATACATATCAGTCAGATAAAAACACTAAAAACATATT TTCTAAATTTGAAAGCCTATCCTGAGCAATGTAAAAGCACATTATGTTCTGTGTTAGATGTGGAACTGTAGAAGTTGAAG TATTTAACTGGTTCTGTCAAAGTAGCTTTAGGAGAGGATATTTTCTTGAATAGTATGAATGTTCGTTTGATTTCTCCCAG AAAATATTTTCCGAGTGTTTAATCAATCTTTTCCGTTGCTGGATATGCTGTGATGTTTGTGAGCATTTATTGTTTGGCAC TGGGGAACGGAGGAACATAGATTTTCAGCTCCAGCATTTGAGCTTTACTTGAAGAAACAATTGTGCAGGCTATGTTGGTC ATTTTTGCTTTATTTTGTTTCTTACTAATTTCATAATTCACATTTTTAACCTTTGGTTCCTGTTAAATCTTGTGCCTGTT TGCTTTCTGCTACTGTGCTACGATCTGTTAGGAACCCATATTTTCATGCTAATTGCTTTCTCATCCGTTTATGTTGAACT TGAAGGTTTAAACTTGTCATTCATTACCTCGCTTATACTTTTAGCTGTGCATATGGTGACAATATGTTTTTTCCTTATTT TGTTATTAGAAAAGTATATGATGACAATAGAACTTGGTATGATGTAATTGAAGCTACTAATCGAAGTGTCTTTTAATGTT GCTTCTGAACTTGGGGGAAACGCTTACATCAATGATATTATTGCCTGCAGGACCTGCTGAGACGTGAGAGCAACAAAAAT CGTGGGGGTGTCTCAATGCTCATTGTCATATTAGTTGGTTTACTTGGCATAGTTATGGGGTATCTGATGAAGAAGACCTA AGTATCTGAGATTCCATCCATCTTTCACCATACTTCACAGTTTCCCTATTGTTCCTGAGTATTCAGAAAATGATGACGAA AGGAAAAATAGGTTAATTTAGCAGGTATTTTCTTTTGGAGGGTCGTTAATATTTGAATGTAGACACATTAGTTGGGAGTG TGGGTCTATGGTTGCTTGTAGAGCAGACTATTGTGAATTGACTCATACTTTTGGGTAACATGCATTCTTTTTGTAACTTG TGGAAGATTATTTTGTGTGGTTTATCTAATGACTATCTGGAAATGTCATCAAAGACCACCAGTAACATTAATAGTAAGAG TATAATTTTTTCACCTCTTCTTGTGAAGAATATCAAAATTGAAGGTCAGTACTTGACCTGGGTGATCAGATATACAGCCT TGCTCTACTTTAGGGATGTAGGGCATTTCAATGTTCTTAGAAAATATTAATTAAGGATCCATACAAGCAGAAGAAAAGCT TTACTTTAGCACTTTCCAGATCCTCAATGAATATTAGTTTCTTTTAAGTTCTATTTATAAGTCTCATTTAGTTGTTAACC CTAAACTCGTGCTTGGACCGTATCTAAGCTTAAGGGATTTGTAGATTTTAATTGATGTCCGTACCGCTCTGCAATAATTA CTCCGTATTTAGGTATGAAAATAACATTGCTAGTTGATATTTATATATTCATCTTTGGATTCCATCATTTTTTTTAATCT AAAATAAAAGTATAAACGTGCCTACTGATTTATCAATAATTACCCAGTCTTTAGGTATGAAAACACTTGCATGGTGAAAA TGGAGTATGTGAATCATCCCATGAATCAGACATAGGTGCGAACAACTCCTCTATCTCAGCCTCGAGGTAGGATACATAGG GAATCCTTTCCATCCCTAATTCTTCAAGCATGAGGAAATAACAGGCACCAGTGCGTAGCGTTGAC
CDS sequence (LotjaGi2g1v0424200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCACTGGCTACCTTCTCCGCATTGATCCTCTCGAACTCAAGTTCACCTTTCAGCTGAAGAAGCAGATCTCATGCTC TCTTCAATTAACAAATAAGACTGATGAATATGTTGCTTTCAAGGTGAAAACGACAAATCCTAAGAAGTATTGTGTTCGTC CAAACACTGGGGTTGTCTTGCCGCGTTCTACATGTGATGTTATAGTTACCATGCAAGCGCAGAAGGAAGCTCCGCCAGAT ATGCAATGCAAGGATAAGTTTCTTCTTCAATGCGTAAAAGTAAATGATGGGGTCTCCCCAAAGGACATCACTGCAGAAAT GTTCAACAAGGAATCAGGGCACGTGGTTGAAGAATCCAAATTGAGAGTGGTGTATGTCTCTCCACCTCAACCTCCGTCTC CAGTTGCGGAAGGTTCTGAGGAAGGCTCATCGCCCAGAGGTTCTGTTTCTGAAAACGGAAATGTCAATGTCTCAGACTCA GCAACAATTGCCAGAGGATTTACTGAAAGACATGAGGCTACAGATAAATCTGCAGAGGCAAAAGCTCTTATCACGAGGCT GACTGAAGAAAAGAGTAATGCAATTCAACAAACTAACAAGCTTCGACAGGAATTGGACCTGCTGAGACGTGAGAGCAACA AAAATCGTGGGGGTGTCTCAATGCTCATTGTCATATTAGTTGGTTTACTTGGCATAGTTATGGGGTATCTGATGAAGAAG ACCTAA
Protein sequence (LotjaGi2g1v0424200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTGYLLRIDPLELKFTFQLKKQISCSLQLTNKTDEYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQAQKEAPPD MQCKDKFLLQCVKVNDGVSPKDITAEMFNKESGHVVEESKLRVVYVSPPQPPSPVAEGSEEGSSPRGSVSENGNVNVSDS ATIARGFTERHEATDKSAEAKALITRLTEEKSNAIQQTNKLRQELDLLRRESNKNRGGVSMLIVILVGLLGIVMGYLMKK T
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 239 | 239 | 2.6E-120 | ||
| PIRSF | 1 | 240 | 240 | 4.5E-69 | ||
| Phobius | 1 | 218 | 218 | - | – | |
| PANTHER | 1 | 239 | 239 | 2.6E-120 | – | |
| Gene3D | 2 | 130 | 129 | 8.9E-42 | ||
| SUPERFAMILY | 2 | 141 | 140 | 1.05E-45 | ||
| ProSiteProfiles | 6 | 126 | 121 | 30.318 | ||
| Pfam | 7 | 111 | 105 | 1.9E-32 | ||
| MobiDBLite | 126 | 160 | 35 | - | – | |
| MobiDBLite | 143 | 160 | 18 | - | – | |
| Coils | 170 | 211 | 42 | - | – | |
| TMHMM | 218 | 237 | 20 | - | – | |
| Phobius | 219 | 238 | 20 | - | – | |
| Phobius | 239 | 241 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
Expression pattern of LotjaGi2g1v0424200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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