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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0427200 |
| Transcript ID | LotjaGi2g1v0427200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Deoxyribodipyrimidine photo-lyase; TAIR: AT1G12370.2 photolyase 1; Swiss-Prot: sp|Q9SB00|PHR_ARATH Deoxyribodipyrimidine photo-lyase; TrEMBL-Plants: tr|G7KG67|G7KG67_MEDTR CPD photolyase; Found in the gene: LotjaGi2g1v0427200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92461538..92467815) extracted from Lotus japonicus Gifu genome v1.2.
CTTAACCGAAAGTCATTGCATATACCTATGAATCGAAAACGATTTCTTGTTGCTTGTCCAGCACCATATCCATATACATA TTCATATATATCCTTATACGCTCATGTCCATATCTAGGTATAGTTGAACTCAGTCATATGAGAATCTCCAACTGTTAAGC CTAAAATCCTTCTTCATTCACCTATTTCGCTAAACAAACTTCTATATCAAAATCTTTTTTATTTTGTTTGGGTGTTTAGG TTAGGAAGTTTCTACATTCGACTCGAGATAATTCTCCCAGCAGTAAATTTTTTTCATACACCATATACAAGGTGATTTTA GTTAATACGACACAGTCTCATTGATGAGATAGAAAATGAGACATCATTTGCAAGCACCAAATTTTGATTCTCCCATTGCT CACTAAAATCAAATTTAGAAAATACTTCAATAACAGAACTTTTACCAAAAACCCTAAACTTCCTTCACTTGTGGGCCTTG AGGATTGTTTAACCTTATTGTCTGCATGGGCTAGCGAGATCCAGCTTTAAATTGGGCCTTTAAATTCAGAAATGAGATCC AGTTACCCTTTCATTTCAGATTTATTTTATTAAAAATAATTTACGTTACACGTGTCAAACGATAACTGGAAGCGCGTATA TTAGTTTGAAACCACACATCAAACTGTTGAAGTTCCCTCCAAACTCCAACGCGCCGGTTCGGCTTCTGCGTTTCCGATTC AATTCACGGCCATGGCTTCCGCACCGTCGCCAATGTCGGTCAATCCGGGTCGCATTCGGACCCTGAAAGAAGGGTCGCCC CGTTCCAACGGCGAATCGGGTCCCGTCGTGTACTGGATGTTCAGAGATCAACGGGTTCGAGACAACTGGGCTCTTATCCA CGCCGTTCACCAAGCCAACAAAGCCAACGTTCCCGTCGCCGTCGTTTTCAATCTCTTCGATCACTTTCTGGGTGCAAAGT CTCGTCATCTAGGGTTCATGCTCAGGGGTTTACGCCAATTGTGTCACCAACTTCAACACACTCTTCAAATCCCCTTTTTC TTGTTCCGGGTATGTAAATTTTTTCATTCTCTCTTTGAAATTCCTCAACCCTTGAACCGTGTTGTTTGTAATTTGATTTA ACCTAACTTCTGTATTTTAGGGTGAAGCAGAGGAGACTGTGTCGAAATTTGTTAGGGAATGCGGGGCTTCATTGTTGGTG ACGGACATGTCACCCTTGCGTGAAGTTCGGAGGTGCAAATCGGAGATTTGTGAGAGGGTTGGTGATTCGGTGATGGTGCA TGAAGTGGATGCTCACAATGTGGTGCCAATTTGGGTGGCTTCTGATAAATTGGAGTACAGTGCTAGGACCATAAGGGGGA AGATTAACAAAAAGCTTCCTGAGTATCTCACTGATTTCCCTGACATTGAACCACAATCTAGAAAATGGGTTGTCACCGAG GACCGCATCATCGACTGGGATGATCTCATTGCTGAGGTCTTGAGGTTAGAGTTATATTATTCTTTTATTAGAATAATGTG GTCAATAAGGACCGAACTCTAGGTTACTTGGCTATAAAGACTCTGTTAACATCCCATGTCGTGAAATAATTATCCCAAAA GCTTCATTTGTTGGTTGAAAAAAGATGAATGTTTTTGTATTATATTTCTAAGAATTCTGTTTATAGGCTTCTAAACTCAA ATAAAATCATGTGGTTATGTTAACCTGAATTTGTTTTTTGTTTCTAAAACTAGAGGGGCTGAGGTTCCTGAAGTTGATTG GTGTGTGCCAGGGGAAATTGCAGCAATGGAAGTGTTGATGGGAAGTAAAAATGGATTCTTGACTAAAAGGTTGAAAAGTT ACCTAGACCGCAATAACCCGTGTAAAACCACTGCCCTTTCTGGTTTATCGCCCTATTTGCATTTTGGACAGATATCTGCT CAAAGGTGTGCTTTGGAAGCACGTAAGCTGCGAACATCATGCCCTCAGGTTTGTTGTACTTGTCCTGCCGTTTGCAGCGT GTTCTTCACTTCTGTTGTTTGGTTTTATTCCCACCAATGGTGATGAATATCTTCCATTTACATGTTTTTTGAGTTTAACT TTCCTGTGATTGACTTGCTGTTGTTCTTAAGGCGGCCGATGCTTTCTTGGAGGAGTTAGTTGTGCGGAGAGAACTTGCTG ATAACTTCTGTTACTATCAGCCTCAGTATGATTCATTACAAGGAGCATGGGATTGGGCTCGTAAGACCTTACTCGATCAT GCTGCTGATAAGAGAGAACATATCTACTCGTGAGTCACATTGTTTTGCAACTCTATAATGTTTTTGTTTACTTGCTATGC AAGCAGGCTCATGTATTCTTTTGTGCTCACAGGAAGGAACAATTGGAGAAAGCACAGACTGCAGATCGTGTAAGCTAATC ATTCATGGATAATAATAACTTTCCCAATTAAAACCACCTGACTCTTTCAAAGTCTCCTGCGCTTTCTTACATATAATAAT TTACTGGCTCTCAAACTGACTTTTTTCATAGCCCCTATATTAATGCATCGTCACACTTCAGCTCCTTCTAACTCACTGGG TTTTCATTTGGAATTCGCCTTGATGAGCATTATATTGTTTTGTTACAAATATCAGCTATGGAATGCTTCTCAGCTGGAGA TGGTTCATTTTGGGAAAATGCATGGTTTTATGCGGTAAAAAACTATTTTATGAATCATTGTCTCTTGTTTGCTGCTTTCC AAAGAATCTTAAGTTGCCCAGCCTAGGTTTATTACATATGTCATTATGAAGCAATGTGTATCCATATGTCATTATGAAGC AATGTGAGTCTACTGATACTATGGAAGCATCATTTATAAAATTTACTGCTGCAAAAAAAAGTGTTTAGAAAAGGATCTAA GATATAGAAGATGGTAACACAAGGAACATGTAAGTAGTTTAGTTCAGCAAATTGCCATGTCCATGGATCAGGAGAAATTC CATAAACCACATGACCTTAGGCAATACATCTTCTTTACCAAGTCTGCTCTTCTGTATTCATATATCATCGTTATCTGCAT AGAAAAAACTAACTTCTCATTCTTCAAGGAATCTGTGATTTCCCAAGGCATCAGACTAACCAGCCCGTCATGAATATCCT GTTGACAAACTGATACTGTGCCACTAGCCTAGTTTTTTTTTGGCTGTGTGACTGTGTGGCCATGGGGAGAGGTAGAGAAA TAGTATGAATGGTTCCTTATGTTGGTTAGAGAAGTCTACAAAATTTGCTGAATATCTCCCCAGATATGCTAAATCATGTT CTCTTTCTGGATTTCTGCTTCATTTTAGAAAATTTTACTTTTTTCCTACTATGCAGGACACTGTATAATAACATATTAGG AGAGACACACCGCATAAATATTTGTTTCCTCAAATAGAAATTTTCACGTGCAGAATGTATTGGGCAAAGAAGATACTAGA GTGGACAAGAGGACCTGAAGAAGCACTTGAGATATGTATTTATTTAAATGATAAGGTAATGTACGAATCCTTAACCAATC CAGTGAAGTAATGTAATCACAAATGCAGTTTTAATGAGGCGACTGTTATTACATTTGTCTAAATGACATCAATTTCACCT GATTGCAGTATGAAATAGATGGGAGGGATCCAAATGGTTATTGTGGCTGCATGTGGTCAATATGTGGGGTCCATGATCAG GTTCGCCTATATTGTTCTTATTTGCTACAACTTCATTTATAATTGAATGTTGAGGAAGAATGATGTTTTGGCCTTGTGCT TTTGGATCATAAAATGTAGTAGTTACTTTTTTTGCGAAACTGTCATAAAGAATTGTAAATTTTCAAGAATTTTGGCACTC ATGTTGTAATGCGTTTCAGGGTTGGCGAGAGCGACCCATTTTTGGGAAAATTCGATACATGAACTATGAAGGCTGCAAAA GAAAATTTGATGTTGAGAGATACATTGCATATGTCAACAAAGTAGTTAGTGAGATGAAAAAGAGAAAGGCTGAAAACTTG ATATCTCAAAAGGAGAAACTACTCCGCAGTTGCGATCCTGAAGATTGAAGAAGCATATATACTTACTAGATTTCTAGGCA TATTTTGTGTTTGGGTAGAGCTAATTTGTAATGTAAAATTATTTCACTGATGATATTTGAAGCAAGAATAGTCTTCTGCG TCTTTAGTTTTGGACACTTTTTTTCATAGACACGCATCCTTATGGTCGATTGATGAAACTGAGATTGCTTTTGCTTAGTT GGTTGTATTGACATTAGAGTGAAAAGCTAGATGAACAACTCCAGCTAAACAGGTCCTTTTTTATATGACCGAAATGTGAT CTTTTTTCCTTTTCCGAGTAACAGCAAAGTTTTCTAACTTCACTATTTGAAATAATGTCGCTTCTGTGAAAACTATACAA ATAACTTTGCTTAGTACCTAGGTTGAATCACAAGGACTTGAATGTCAATGTCCAAGGAATCAGCAAAAATGAGACAATTA AACTATATGATTACAACAAATATATTTTACAAGTAAGCAGAAGCTCATCTTCGAGTTCCCCAATTTCATCATATCTGGAG ATCATCTAATGAAAGTTCATGTGTAGTTAGCGTCTTCAATTTCTGCAAAAGAAGACAAATGTCAAGCAAGGATCGTTGTT GCATTTGACATATTTGCAATTCCTAGTTAAGGAACACATCTGGCAAGGAATAAGGTAGAAACTTCAATACCGTGATAAAT TGTGCAGGATCATCAAGACTTGATGAACCCAGAATAATTTCCCTCCTCAGCTTTCCACTAAGCTTGTGGCAAGCCCTCAG CTGAAGATTAAAACAACGTTCAGTTCAGAAATTAGAACACAAGGATTAAATATTATAATCTCATTTCATCAAAGAAAGGA TTCAAACCTCTGATCTGGTTGCTCCACCGACGATAAATACAAAAATTCGTCGCCCCATCTTCTTGAAATCACTTGATGCA TGTCTAAGCACTGAATCGCTGTATGAGAGCAGGAACATATGAAAATCACATGAGAAAGTTGCGGCTTTATTAGCTATTTC AACATACGCATGGTGGTTTACTACAAACTAAAATATATTAATAATAATAATAATAATAACAAGCTAATGCAAGTCTACAC AACTCATAAGCGAAGGGTGAATAATAAGCGAGCAAGTAGAGGGAAGAACAGTTAATGGACAAAGAAAGAGAAATATACTG ATCTGATCAAAAGCAATAATTAAATTACTGACTAGCACTGAGGAATGAAGACAAGAAAACCTGGAATATCCATCATCAGA GCCTCGTGGTCGAGCCCAAGTCGGCGTGCGTCTAGATCTCATCGAATGATGATTTTCATTTAAAGACCCAGCAAGGGGGG AGCTGTGAAAACTTGGACTTGGATCATTCAAACATGGATAGTCTACCTTTGACAGTTCATTTTTTGTGAGTTTTTCAATG AGTTCCTGAGTAATCATCAACACATCACACGAGGCATTGAGGCTATAAATATGCAACCCATAACATAATCGAAAAGACAT TATACGATAGAGTAGCAAAAACTATTTGCTTATTCAACATTTTTGCAGCGACTAATATTTGGAACCCTCAGACAACCAAA CTACATCGTTAAACTCTTCCTTTATGCTGATGGCTGCTATCCTTGAAATTTTAAAGCGAATGCATATTTTATGCGAGAAA ATCATATTGATATAATTTGCACCTCTATTATGGGATAAAAGCGCGATAGCTGCCATTTCTCTTCTTCACCAGGACGTTCT TTCCTTGCAGCACGCGTTTTCTGACAACTTAAAAGAACACATTTTAGGCATAATGTAACCTTGAAAACTCACAATTTTTA ACTAGAAATTACCTTTTACCTTATTCATATCAAACTTCAGACCAAAAGTACGAGTCGAACTTTTTTTGGTATTTGGTTGT ACCCCAAGCATTCTCAAATTTTCCACAGCACAGATATCCTCATCTGTCAATTTTGCTACCTGAAAAACTCATTTGAAAGA TAAAAGTTGGATAACACCATTACAGCTGTTAGGAATAACATCATTAGCAGCATATTTATTCTTTAAAATATAAAATGATG GGCAAGCCAATAAGAAAGAAGCCATACCTTCATTAAATTCATACCCTTTTCTCCCTCAAATTTCTCAGGATAAATTGCAG CAAGAATCATTAACAAGCGCAATTTATTTTCACGGGATATGTCCTGAATTAAGCAGTTTAAATATGAAAGTTAGTGTAAA AGTTGCATGTCTAATTTCACAACTCTATCTTGCACTAA
CDS sequence (LotjaGi2g1v0427200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCGCACCGTCGCCAATGTCGGTCAATCCGGGTCGCATTCGGACCCTGAAAGAAGGGTCGCCCCGTTCCAACGG CGAATCGGGTCCCGTCGTGTACTGGATGTTCAGAGATCAACGGGTTCGAGACAACTGGGCTCTTATCCACGCCGTTCACC AAGCCAACAAAGCCAACGTTCCCGTCGCCGTCGTTTTCAATCTCTTCGATCACTTTCTGGGTGCAAAGTCTCGTCATCTA GGGTTCATGCTCAGGGGTTTACGCCAATTGTGTCACCAACTTCAACACACTCTTCAAATCCCCTTTTTCTTGTTCCGGGG TGAAGCAGAGGAGACTGTGTCGAAATTTGTTAGGGAATGCGGGGCTTCATTGTTGGTGACGGACATGTCACCCTTGCGTG AAGTTCGGAGGTGCAAATCGGAGATTTGTGAGAGGGTTGGTGATTCGGTGATGGTGCATGAAGTGGATGCTCACAATGTG GTGCCAATTTGGGTGGCTTCTGATAAATTGGAGTACAGTGCTAGGACCATAAGGGGGAAGATTAACAAAAAGCTTCCTGA GTATCTCACTGATTTCCCTGACATTGAACCACAATCTAGAAAATGGGTTGTCACCGAGGACCGCATCATCGACTGGGATG ATCTCATTGCTGAGGTCTTGAGAGGGGCTGAGGTTCCTGAAGTTGATTGGTGTGTGCCAGGGGAAATTGCAGCAATGGAA GTGTTGATGGGAAGTAAAAATGGATTCTTGACTAAAAGGTTGAAAAGTTACCTAGACCGCAATAACCCGTGTAAAACCAC TGCCCTTTCTGGTTTATCGCCCTATTTGCATTTTGGACAGATATCTGCTCAAAGGTGTGCTTTGGAAGCACGTAAGCTGC GAACATCATGCCCTCAGGCGGCCGATGCTTTCTTGGAGGAGTTAGTTGTGCGGAGAGAACTTGCTGATAACTTCTGTTAC TATCAGCCTCAGTATGATTCATTACAAGGAGCATGGGATTGGGCTCGTAAGACCTTACTCGATCATGCTGCTGATAAGAG AGAACATATCTACTCGAAGGAACAATTGGAGAAAGCACAGACTGCAGATCGTCTATGGAATGCTTCTCAGCTGGAGATGG TTCATTTTGGGAAAATGCATGGTTTTATGCGAATGTATTGGGCAAAGAAGATACTAGAGTGGACAAGAGGACCTGAAGAA GCACTTGAGATATGTATTTATTTAAATGATAAGTATGAAATAGATGGGAGGGATCCAAATGGTTATTGTGGCTGCATGTG GTCAATATGTGGGGTCCATGATCAGGGTTGGCGAGAGCGACCCATTTTTGGGAAAATTCGATACATGAACTATGAAGGCT GCAAAAGAAAATTTGATGTTGAGAGATACATTGCATATGTCAACAAAGTAGTTAGTGAGATGAAAAAGAGAAAGGCTGAA AACTTGATATCTCAAAAGGAGAAACTACTCCGCAGTTGCGATCCTGAAGATTGA
Protein sequence (LotjaGi2g1v0427200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASAPSPMSVNPGRIRTLKEGSPRSNGESGPVVYWMFRDQRVRDNWALIHAVHQANKANVPVAVVFNLFDHFLGAKSRHL GFMLRGLRQLCHQLQHTLQIPFFLFRGEAEETVSKFVRECGASLLVTDMSPLREVRRCKSEICERVGDSVMVHEVDAHNV VPIWVASDKLEYSARTIRGKINKKLPEYLTDFPDIEPQSRKWVVTEDRIIDWDDLIAEVLRGAEVPEVDWCVPGEIAAME VLMGSKNGFLTKRLKSYLDRNNPCKTTALSGLSPYLHFGQISAQRCALEARKLRTSCPQAADAFLEELVVRRELADNFCY YQPQYDSLQGAWDWARKTLLDHAADKREHIYSKEQLEKAQTADRLWNASQLEMVHFGKMHGFMRMYWAKKILEWTRGPEE ALEICIYLNDKYEIDGRDPNGYCGCMWSICGVHDQGWRERPIFGKIRYMNYEGCKRKFDVERYIAYVNKVVSEMKKRKAE NLISQKEKLLRSCDPED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 486 | 486 | 1.7E-243 | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| Gene3D | 3 | 157 | 155 | 4.3E-47 | ||
| TIGRFAM | 8 | 466 | 459 | 6.5E-207 | ||
| ProSiteProfiles | 30 | 163 | 134 | 28.597 | ||
| SUPERFAMILY | 31 | 210 | 180 | 8.24E-42 | ||
| Pfam | 32 | 193 | 162 | 1.4E-26 | ||
| Gene3D | 158 | 327 | 170 | 6.5E-54 | – | |
| SUPERFAMILY | 223 | 474 | 252 | 4.06E-59 | ||
| ProSitePatterns | 304 | 318 | 15 | - | ||
| Gene3D | 328 | 478 | 151 | 4.5E-76 | – | |
| ProSitePatterns | 431 | 450 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Deoxyribodipyrimidine photo-lyase activity | Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
Expression pattern of LotjaGi2g1v0427200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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