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TIGR00591

Source: TIGRFAM

Description

phr2: deoxyribodipyrimidine photolyase

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003904
Molecular function Deoxyribodipyrimidine photo-lyase activity Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.
Subterm of
GO:0006281
Biological process DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Subterm of

Associated Lotus transcripts 2

Transcript Name Description Predicted domains Domain count
Lj2g3v2002610.1
– PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cicer arietinum] gi|502160136|ref|XP_004511645.1|
Domains
18
LotjaGi2g1v0427200.1
– Deoxyribodipyrimidine photo-lyase; TAIR: AT1G12370.2 photolyase 1; Swiss-Prot: sp|Q9SB00|PHR_ARATH Deoxyribodipyrimidine photo-lyase; TrEMBL-Plants: tr|G7KG67|G7KG67_MEDTR CPD photolyase; Found in the gene: LotjaGi2g1v0427200
Domains
18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 50.00