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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0429700 |
| Transcript ID | LotjaGi2g1v0429700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal protein L7a; TAIR: AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P35685|RL7A1_ORYSJ 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0429700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92672748..92675564) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGCCCAATTGTTTCCCCACGAAAATAAAAGTTAGGTTTTCCTCAGAGGTACTTCTTTGCGATACACCAGGACCAGGT GCAGGCACCAGCAGCAGCAACAGCAATGGTGAGTAACACTGCATATGAATCTCAATTCAGATCCTCGTTCTGTTCACTTC TCCATGCTTGTTTCGATTCTTCCCTCAATGAACATTCATCGTTGTATTTGAATTTGTAGGCTCCTAAGAAAGGTGGAAAA GCTCCTGTTGCAGCTTCCAAGAAGAAAACTGTATGAAACTATCTGAAATGAATCTTACTCATGATCCATTTTTTGTTTTT TTAATTATCTGATTTTAGTTTTATGAAATCTCAGGAGAAGGTTACGAATCCGTTGTTCGAGAAGAGACCGAAGCAGTTCG GAATCGGAGGTGCATTGCCACCGAAGAGGGACCTGACCAGATTCGTGAAGTGGCCCAAAACTGTGCAGATTCAGAGGAAG AAGAGAATCCTCAAGCAGAGGTTGAAGGTTCCCCCAGCTTTGAACCAGTTTACCAAAACCCTAGACAAAAACCTTGGTAA GACAAAATTTACAAAATCTTTGTATCTGTTTTTATTTTATTTTTGTGTGTTGTTCTGTGTGGTGTAGGCTTTGTTGCTAG GCATATTTGATTTCTTTAAAGCCAATGTTAGAATGGTCATAGTTTGATAGTGTTAATTGGTATACATAAAATAGGCTGAA GTTTTTACTGAATACCTTACTCTAATACTATTGATTTTTTATTGGATGGGTGCTGTATGTTAGGAGAAATATTTTCTCTT GTTTTAATTTGTGGTTGGCAGAATACAAATTCAAAATGCTATTGTTCAGGAAATTTTAACCGATTAAAGTCATTTGTATC ACTTTGTTGCTCTGGAGATTGTTTTGTGACATAAAACCCTGATAATGTTATGATTGCAATGCTTTGTTTTTTCCCTGTCA AATTTCAGATATTTGGATTGTTACAATATCATTTTGTAGCTCTAGCAACTTTTATCTGCTAAAAAAATTTGGGTTGTATT TCTATTGTTGTTTTTAACTTCGCTTGTCAGAGATTGCACACTTTTTATTTATATAGGTAATGATAATCATAGGTTTATGT CGTGATTAGTTTTTTGGTTGTTGCTGCCAATTGCTCATGAGCTGTTTTTTATGTTTTACTTTAGGTTGTGTATTAGTTAT CTACTTTTTGTTAGGCAACTTTCAGAATTCTGTATTCATATTTTGCTTCTTTATTTTGTATCATGATCTTACTTATCTTT ATTGATCTTACCTGCAGCAACAAGCCTGTTCAAGATACTTCTGAAGTACAGGCCTGAGGATAAGGCTGAAAAGAAGGATA GGCTTGTCAAAAGGGCTCAGGCTGAGGCAGAAAACAAAACTGTCGAAACTAAGAAGCCTATTGTTGTGAAGTATGGTCTC AATCATGTTACCTACCTTATTGAGCAGGTTGTCTCTTGATTCATTACTGTATGATTGCAGTTTCAACCCTTGTGTGTAGC GACATTGATGAGTGACTTGTTAATCTATCTTTCCCTTGCAGAATAAAGCTCAACTGGTTGTGATTGCACATGATGTGGAC CCAATTGAATTGGTCGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCGTACTGCATAGTGAAAGGCAAGGCACG CCTGGGCTCGGTAATTTTTACTGTGATCTCTACATCGTTTTATGACTGAATTAAATTTTCTTGATAGCCCCAAGTATATG ACTGATTTAACCCACTTGCATTTTCAACAGATTGTCCATAAAAAAACTGCATCTGTTTTGTGCTTGACAAGTGTTAAGAA CGAAGACAAGTTGGAGTTCAGCAGAGTCCTCGAAGCTATCAAGGTGATGTTGAATGGAACCATCCTTTCATTTTTTCTGC TGTTAATACTCTTTTTATAAAACTGAATTCATTGTGTGTGGTTTCCTTTTCAGGCAAATTTCAATGACAAGTACGAAGAG TACAGAAAGAAGTGGGGTGGTGGGATCATGGGTTCCAAATCCCAAGCCAAAACCAAGGCAAAGGAAAGGGTCCTTGCCAA GGAAGCTGCCCAGAGGATGAATTAGGAGCTTTATCAATTTTTGTTGCTTTCTATCTGCCGTTTTTTGTTCTTGTATGTCA CCGATAGACACAACCCTTTTTTCTGTGAGATTGATTATCTTGAGAACAGCATCAGTAAATTATTCCCAGCTTTTCTCGCA TGAGAACAGCATTGAGTAAGAGAACACCCTGAAATGAAGTTGAAATTGTGGTAAGAATTATATTTCAAAAACTCCACTCA CTTTGTGAATTAAAAGGGAGTTGGGAATTGGGATGGATCGTAGTATCGGAGGGAGTGAGGAAAAAAGAGAAGGTAAACCA ATGAGGCTTCATTTATTCAAAGATGAACAGATGAGATGATACAGTAGAATTTTGGAGCATATTTGGCCCCATTTGGAAAC AAAAGCTTAATTAAGCGCTTATTCATAAGCTATATATAAGTATAAGCTCTTTTTTATAAGTTATCTTGAGTAGCTTATGA AAATAAGATAACTTATGAAAATAAGCTCAAAACAGCTTATGGCCATAAGCTGTCTCAAACACTGACATAAGAGCTTATGC TACAGCTCAAATAAGTTCTTTCAAACGGGGCCTTTAGTATATGTTTTAGTATAAGCTCCAATTGTTATTTTATTTGTATC CAAGCAGACTTGAGGTAAAAACTAATAGAAGTTCTTTATTGGCTAGCTAAACTCAACTAGCTTTGTTCCTATCCCTCAAA ACTTCGTTTGAGTGGAT
CDS sequence (LotjaGi2g1v0429700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCTAAGAAAGGTGGAAAAGCTCCTGTTGCAGCTTCCAAGAAGAAAACTGAGAAGGTTACGAATCCGTTGTTCGA GAAGAGACCGAAGCAGTTCGGAATCGGAGGTGCATTGCCACCGAAGAGGGACCTGACCAGATTCGTGAAGTGGCCCAAAA CTGTGCAGATTCAGAGGAAGAAGAGAATCCTCAAGCAGAGGTTGAAGGTTCCCCCAGCTTTGAACCAGTTTACCAAAACC CTAGACAAAAACCTTGCAACAAGCCTGTTCAAGATACTTCTGAAGTACAGGCCTGAGGATAAGGCTGAAAAGAAGGATAG GCTTGTCAAAAGGGCTCAGGCTGAGGCAGAAAACAAAACTGTCGAAACTAAGAAGCCTATTGTTGTGAAGTATGGTCTCA ATCATGTTACCTACCTTATTGAGCAGAATAAAGCTCAACTGGTTGTGATTGCACATGATGTGGACCCAATTGAATTGGTC GTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCGTACTGCATAGTGAAAGGCAAGGCACGCCTGGGCTCGATTGT CCATAAAAAAACTGCATCTGTTTTGTGCTTGACAAGTGTTAAGAACGAAGACAAGTTGGAGTTCAGCAGAGTCCTCGAAG CTATCAAGGCAAATTTCAATGACAAGTACGAAGAGTACAGAAAGAAGTGGGGTGGTGGGATCATGGGTTCCAAATCCCAA GCCAAAACCAAGGCAAAGGAAAGGGTCCTTGCCAAGGAAGCTGCCCAGAGGATGAATTAG
Protein sequence (LotjaGi2g1v0429700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKKGGKAPVAASKKKTEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKT LDKNLATSLFKILLKYRPEDKAEKKDRLVKRAQAEAENKTVETKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELV VWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQ AKTKAKERVLAKEAAQRMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 12 | 258 | 247 | 7.6E-155 | – | |
| PANTHER | 12 | 258 | 247 | 7.6E-155 | – | |
| MobiDBLite | 12 | 26 | 15 | - | – | |
| PRINTS | 30 | 47 | 18 | 2.4E-68 | ||
| PRINTS | 47 | 64 | 18 | 2.4E-68 | ||
| Gene3D | 51 | 234 | 184 | 6.8E-87 | ||
| PRINTS | 67 | 86 | 20 | 2.4E-68 | ||
| SUPERFAMILY | 89 | 230 | 142 | 4.88E-33 | ||
| PRINTS | 91 | 104 | 14 | 2.4E-68 | ||
| Coils | 102 | 122 | 21 | - | – | |
| Pfam | 116 | 206 | 91 | 5.5E-25 | ||
| PRINTS | 125 | 145 | 21 | 2.4E-68 | ||
| PRINTS | 129 | 143 | 15 | 2.7E-23 | ||
| PRINTS | 148 | 161 | 14 | 2.7E-23 | ||
| PRINTS | 164 | 174 | 11 | 2.7E-23 | ||
| ProSitePatterns | 167 | 184 | 18 | - | ||
| PRINTS | 174 | 188 | 15 | 2.7E-23 | ||
| PRINTS | 186 | 210 | 25 | 2.4E-68 | ||
| PRINTS | 218 | 238 | 21 | 2.4E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of LotjaGi2g1v0429700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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