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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0429700 |
| Transcript ID | LotjaGi2g1v0429700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal protein L7a; TAIR: AT2G47610.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|P49692|RL7A1_ARATH 60S ribosomal protein L7a-1; TrEMBL-Plants: tr|I3SHC8|I3SHC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0429700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92672853..92674852) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGAGTAACACTGCATATGAATCTCAATTCAGATCCTCGTTCTGTTCACTTCTCCATGCTTGTTTCGATTCTTCCCT CAATGAACATTCATCGTTGTATTTGAATTTGTAGGCTCCTAAGAAAGGTGGAAAAGCTCCTGTTGCAGCTTCCAAGAAGA AAACTGTATGAAACTATCTGAAATGAATCTTACTCATGATCCATTTTTTGTTTTTTTAATTATCTGATTTTAGTTTTATG AAATCTCAGGAGAAGGTTACGAATCCGTTGTTCGAGAAGAGACCGAAGCAGTTCGGAATCGGAGGTGCATTGCCACCGAA GAGGGACCTGACCAGATTCGTGAAGTGGCCCAAAACTGTGCAGATTCAGAGGAAGAAGAGAATCCTCAAGCAGAGGTTGA AGGTTCCCCCAGCTTTGAACCAGTTTACCAAAACCCTAGACAAAAACCTTGGTAAGACAAAATTTACAAAATCTTTGTAT CTGTTTTTATTTTATTTTTGTGTGTTGTTCTGTGTGGTGTAGGCTTTGTTGCTAGGCATATTTGATTTCTTTAAAGCCAA TGTTAGAATGGTCATAGTTTGATAGTGTTAATTGGTATACATAAAATAGGCTGAAGTTTTTACTGAATACCTTACTCTAA TACTATTGATTTTTTATTGGATGGGTGCTGTATGTTAGGAGAAATATTTTCTCTTGTTTTAATTTGTGGTTGGCAGAATA CAAATTCAAAATGCTATTGTTCAGGAAATTTTAACCGATTAAAGTCATTTGTATCACTTTGTTGCTCTGGAGATTGTTTT GTGACATAAAACCCTGATAATGTTATGATTGCAATGCTTTGTTTTTTCCCTGTCAAATTTCAGATATTTGGATTGTTACA ATATCATTTTGTAGCTCTAGCAACTTTTATCTGCTAAAAAAATTTGGGTTGTATTTCTATTGTTGTTTTTAACTTCGCTT GTCAGAGATTGCACACTTTTTATTTATATAGGTAATGATAATCATAGGTTTATGTCGTGATTAGTTTTTTGGTTGTTGCT GCCAATTGCTCATGAGCTGTTTTTTATGTTTTACTTTAGGTTGTGTATTAGTTATCTACTTTTTGTTAGGCAACTTTCAG AATTCTGTATTCATATTTTGCTTCTTTATTTTGTATCATGATCTTACTTATCTTTATTGATCTTACCTGCAGCAACAAGC CTGTTCAAGATACTTCTGAAGTACAGGCCTGAGGATAAGGCTGAAAAGAAGGATAGGCTTGTCAAAAGGGCTCAGGCTGA GGCAGAAAACAAAACTGTCGAAACTAAGAAGCCTATTGTTGTGAAGTATGGTCTCAATCATGTTACCTACCTTATTGAGC AGGTTGTCTCTTGATTCATTACTGTATGATTGCAGTTTCAACCCTTGTGTGTAGCGACATTGATGAGTGACTTGTTAATC TATCTTTCCCTTGCAGAATAAAGCTCAACTGGTTGTGATTGCACATGATGTGGACCCAATTGAATTGGTCGTCTGGCTTC CAGCATTGTGCAGGAAGATGGAAATTCCGTACTGCATAGTGAAAGGCAAGGCACGCCTGGGCTCGGTAATTTTTACTGTG ATCTCTACATCGTTTTATGACTGAATTAAATTTTCTTGATAGCCCCAAGTATATGACTGATTTAACCCACTTGCATTTTC AACAGATTGTCCATAAAAAAACTGCATCTGTTTTGTGCTTGACAAGTGTTAAGAACGAAGACAAGTTGGAGTTCAGCAGA GTCCTCGAAGCTATCAAGGTGATGTTGAATGGAACCATCCTTTCATTTTTTCTGCTGTTAATACTCTTTTTATAAAACTG AATTCATTGTGTGTGGTTTCCTTTTCAGGCAAATTTCAATGACAAGTACGAAGAGTACAGAAAGAAGTGGGGTGGTGGGA TCATGGGTTCCAAATCCCAAGCCAAAACCAAGGCAAAGGAAAGGGTCCTTGCCAAGGAAGCTGCCCAGAGGATGAATTAG
CDS sequence (LotjaGi2g1v0429700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCTCAGGAGAAGGTTACGAATCCGTTGTTCGAGAAGAGACCGAAGCAGTTCGGAATCGGAGGTGCATTGCCACC GAAGAGGGACCTGACCAGATTCGTGAAGTGGCCCAAAACTGTGCAGATTCAGAGGAAGAAGAGAATCCTCAAGCAGAGGT TGAAGGTTCCCCCAGCTTTGAACCAGTTTACCAAAACCCTAGACAAAAACCTTGCAACAAGCCTGTTCAAGATACTTCTG AAGTACAGGCCTGAGGATAAGGCTGAAAAGAAGGATAGGCTTGTCAAAAGGGCTCAGGCTGAGGCAGAAAACAAAACTGT CGAAACTAAGAAGCCTATTGTTGTGAAGTATGGTCTCAATCATGTTACCTACCTTATTGAGCAGAATAAAGCTCAACTGG TTGTGATTGCACATGATGTGGACCCAATTGAATTGGTCGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCGTAC TGCATAGTGAAAGGCAAGGCACGCCTGGGCTCGATTGTCCATAAAAAAACTGCATCTGTTTTGTGCTTGACAAGTGTTAA GAACGAAGACAAGTTGGAGTTCAGCAGAGTCCTCGAAGCTATCAAGGCAAATTTCAATGACAAGTACGAAGAGTACAGAA AGAAGTGGGGTGGTGGGATCATGGGTTCCAAATCCCAAGCCAAAACCAAGGCAAAGGAAAGGGTCCTTGCCAAGGAAGCT GCCCAGAGGATGAATTAG
Protein sequence (LotjaGi2g1v0429700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSQEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILL KYRPEDKAEKKDRLVKRAQAEAENKTVETKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPY CIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVLAKEA AQRMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 244 | 243 | 1.7E-153 | – | |
| PANTHER | 2 | 244 | 243 | 1.7E-153 | – | |
| PRINTS | 16 | 33 | 18 | 1.7E-68 | ||
| PRINTS | 33 | 50 | 18 | 1.7E-68 | ||
| Gene3D | 37 | 220 | 184 | 5.7E-87 | ||
| PRINTS | 53 | 72 | 20 | 1.7E-68 | ||
| SUPERFAMILY | 75 | 216 | 142 | 4.21E-33 | ||
| PRINTS | 77 | 90 | 14 | 1.7E-68 | ||
| Coils | 88 | 108 | 21 | - | – | |
| Pfam | 102 | 192 | 91 | 4.9E-25 | ||
| PRINTS | 111 | 131 | 21 | 1.7E-68 | ||
| PRINTS | 115 | 129 | 15 | 2.3E-23 | ||
| PRINTS | 134 | 147 | 14 | 2.3E-23 | ||
| PRINTS | 150 | 160 | 11 | 2.3E-23 | ||
| ProSitePatterns | 153 | 170 | 18 | - | ||
| PRINTS | 160 | 174 | 15 | 2.3E-23 | ||
| PRINTS | 172 | 196 | 25 | 1.7E-68 | ||
| PRINTS | 204 | 224 | 21 | 1.7E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of LotjaGi2g1v0429700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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