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LotjaGi2g1v0430100.1

Overview

Field Value
Gene ID LotjaGi2g1v0430100
Transcript ID LotjaGi2g1v0430100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Homeobox protein knotted-1, putative; TAIR: AT1G62990.1 homeobox knotted-like protein; Swiss-Prot: sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7; TrEMBL-Plants: tr|A0A0L9UPV4|A0A0L9UPV4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:92713610..92720111) extracted from Lotus japonicus Gifu genome v1.2.

TGGTTATGAAATTAGAGTTTATTATTTGCGTTATTAGATGATAAACCCCAAATTAGCGTAGCCAATCAAATCAAGTACCT AACCAACCTTACCCCAAAACAAAACTGTGAGTAATAAGAAAGAAATGGATTTGTCATGATCAGTTCAGTTCACAGAAGCA GAAGCAGAAGCAGCAGCAGCAGCTTTATCTTGTGTTTTCTGACATCGCTTCGCTTCCATCCCCTTTCATACTAATGATTC CGCACCTCTCTCTCTCTCTCTCTCTCACACGCATATCATATCATACCATAGTTTCTTTCATATAAATTCACCCTGTTGTC TTTAATGCCTTTGTTTCTCCCTCTTTCTCTGCGCATGTAAAATCTTTGTTTCCATCAAACGCGCTGCACTCAAAAGCTAA CTTGCATTTCAGAAACAGATCCCCATAATACCATTACAACCAACTTCCCTCCTCTCTCTCTCAAACATAGTGTGGTCCTC AACCTCAATTCTGATTTTTCTGCTTTCTTCAACCTCTTTTGCCTTTATTATTTATTTACCACACACACACACACACACAC ACACACACCACTTTTGTTAATTCAATTGGGGAGATGCAAGAACCCAACCTCGGAATGATGGGCGGTGGTTTCACCGGTGA TGTTTCAGCTTCCGGCGACCACCACCACCGCCAACTCAAGGCTGAAATCGCCACTCACCCTCTCTACGAACAGCTTCTCG CAGCACACGTCGCGTGTCTCCGAGTCGCCACTCCGATCGACCAGCTTCCACTAATTGATGCGCAGTTATCTCAATCTCAC CATCTTCTCCGCTCGATTGTCTCTCAACACACTCACTCTCTTCCTCCGCATGATCGCCAAGAACTTGATAACTTCCTGGT TGGTAACAAATTGAACAATTTTCATTTTCTCATATTTAGCTTCGTCAATCGGTTTATTTGATGGATCCATGTTGAATACT GTTGCAGGCACAGTATTTGATTGTTCTGTGTACCTTCAAAGATCAGCTTCAGCAGCATGTCAGAGTTCATGCCGTCGAGG CTGTCATGGCTTGCCGTGATATTGAAAACACCTTGCAGGCTCTCACAGGTACAATTCATTACAACCTCTGCTTTTTCTGT CTCAAATTTTACTCAATCACAAGTTTCATTCACAAACCAATTTTTTCCAATGTTCTTTTTGTTTTTATGCTTTCATTTGA TTTGAAGTGATGAACATGCTATTATATATTTACTGAAAAATATCATATCATTTATATTAATTTAAAAAATAATAATTTAT TTTTAGGTATTCATACTGCTTTTCGCTGTAATTAGGCGCGTTGACATGATGGCTCAACAGTTCATTCTTTATGCAATTGG TTTCGGTTCGATTCCCAATTATTGTGAAAAGAAAAAATTTCTTCACTAGTCTCATATTGCATTGTCTCAGAATTGAGAGA TTAGTTTCATGGCATAGGTGATGTGAGATACATTAGTTAAGGGAAAAAAAAAACTAATTTCTCTATAATAATTATCCCTT ATTTAATTTGTATGCCTTTTTTCTTTGTTTCTTGTGTTTGATGCGATTTGGGAGCAAGGGAAGAAGCTATATGATATGAT GATAGTGTGTGTGTATATACAGATTTTCTTTTCTCTTTGTTTCTTGTGTTTGATGCGATTTGGGAGCAAGGGAAGAAGCT ATATGATATGATTATAGTGTGTGTGTATATACAGATTTTCTTTTCATTATTTTGGTGGATTGAGACAAATGAAGGAAGTG GGGTATAGTAGGGTCTGTAAGTGTCCATCATGTGGAAGAGTATACATAAATTAAATAGCACCGGGAAGGGTTGGTTTGGT AGGGAATGATACTCCCTTCCTCCATGGCAACGCCAACAACTAATGCAGTAACCCAAATTTATTGTTCCCAAGGATGCAGT TTTCAGTCTAATTTGTCACATGCGTGTGTTAATTTTAGTTGCATATCCACATTATCAAAAAGTGGAACAAATGGAAATTA GACAAAGCACGAGAGATAGCAATGATTGTCTGTTAGAATTAGATACAGTAATTAAGAGGGACATTTGTAGGGTTGATTGG CTGTCCTCTCATGTTTTCCCTGCCATGGAAAAGCTAATCCCAAAATTTTAGGCTTATCCGAATCAGCCTTTCAATCTGAT TTGTCCTGCCACTGATTCCAATATTTTGATTTGTCATGAGCTTGCCTTTTCTAGCCCTGATAAACAAGCATTGTCTATCG GGATGATAAAAGTTATTTATCATAATCCTATTACTGGACATACTTGCATATGCATTAGCATGTGAATGAATATATTGCAC TATCTTACAATCTATTTTGTACGTTGAGTCCACAAGAAATTCAACATAAATTTAAACACACATTTAATTTGGGAAAAAAC TTTTTTGTTCATGAATTTTAGAATTGATAAAAAAGACAAGTTGATCCTGTTAATAATTTATTAACAACATTTAACATATC CCTCTAAATTAAAGACCATATTATTTTTTAAGGAAAGATTAATACACGTCTAAGTATATTTGTATATGGGTTGATGTTAG TTGTAAGGGGTGTATGCATTTCTTAAGAATGGTGATAAATGTGTTTTACAGTAAATAATTGATAAATGAAAAATATATGA GATCTTTGATTTCTTTCAATGTTAAAAAATCTAATAAATATATTTTAGGAAAATAAATCTCATCCACCTCAATTACTCCT CCACCTAGTCAAATATAAAAATAGAAGAGAGATAAGTGAAATACATGATGAATGATATGATTTGGAAAAGAAGAGCTATA AGAAAAAAATGGGTAGAAGGGAGATAGAAGAGAATGTGAGTGAATATATCAATTTTATCGTGAAAATTCTAATTTAACCA GGCATGTCTACTTATTTTTGGTTGTTTCTGTGTTAGCTTTTCTTATCAAATTATATATGCATCTCATCATTTATAATGAT ATGAAAAACACATAATAATGACTGCAAGTGGGACTGAGGCGTTATTCAACTGTCCCTTTTGGACGTCTTCAAAGTTACCC CACTTTAGGAGAAAATGGCTGGTCAATGGAGTTTGTGAAGTATGATTGAAAAAAGATGGCTGATAATGTGCATCATTGAT GGTTATTGACAATGGAAACTAAAACTTTGTGCGGTCCTTTATGTATGATTAAGATGTATCGAACATTTCTGCATAATTTT GTGACCCCATTCCATCATGGATCCACCAACAAAAGGGGTCAGAGACCATAATTAACTAGGTTTGCTAACTATATCTTCTA TAATTTTAAATGATAAACTGGTTAGGCCTGGATATATATCTTCGCATTTTACTGTTGGTATTTTAATTGTAACTGAAATT TTTTCTGTCATAATTCTTTTCAATGAGGAACTACAAAGTGAAGCTAAACAAATGAGGTTAATAGTTAATATACATAAACT AGGTGATTCTTACCTCAAAGCTTACATAGCTAACCTTTTCCTGACACAATGTTGGTGCTCAAAATTTCACCCTTAACATT CTACCGGTTAATTATGGATTATAAGTTATAACAATCAGAATAGATGCTCTTAGTCAATGTTGTTCACTTGTTTGGCACAA AATCTCACATTATCAGTTGTTTTTTTCTTCAAATATTCTCAAATTTAAGCTGGTTCAGTATTTACATTTCAGGAGTCAGT TTGGGAGAAGGAACTGGTGCCACAATGTCAGATGATGAAGATGATTTGCAGATGGATTTTTCTTTAGATCAATCTAGCAC TGAAGGGCATGACATGATGGGATTTGGTCCCTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGG AACTAAAGATTGAGCTGAAACAGGTCATTAATCTTATTCTTATAATCAATATCTTCTAGCTGTTCTTGCAGGTGCCAGTG AATGTTTGTCCTTTGAATCACCAACCAGATTTGATTTCTGCAGGGTTTTAAATCCAGAATTGAAGATGTAAGGGAGGAAA TATTAAGGAAAAGAAGAGCTGGGAAATTACCTGGTGACACAACTACAGTTTTAAAGAACTGGTGGCAGCAACATGCAAAG TGGCCTTACCCAACAGTAAGTGAACAGCTTCTTCACCAATATTAAGATCCCGTTCAATATGAGCTTATTGGTGGTTATCT ACTAGAAAAAAAAAAACACTAAATAAGCTCTGATGAACTCTATAAAATGTCCTTTGATTTGTATCCAAATGGGTTTATTT AAGCCTGTAACCGTTTGGATATAGACCAAATAACACTTATTGGAGTTTAAGCCTGTTTGGATACTGACTTATTGGAGTTT AATTTACTATAAAAAACACTAAATAAGCTCTTGTAAGTGCTATTCTGTTTGCACCCAAACGGGTTCTTTATGTACTAGAA AGAACACTATAAACTCAAATAAGTGTTTTGACCTTTATCCAAACAGTTCCTTATCTTATAGCATAATTACTTATTCAAAT TGTAAGTAAACTTATTAGAATAGTTTATATAACCTACCTATTTAACTCTTGAGTTTTTTTATAAGTCGTTAAGATTAGCT TATGGAAAAATGTTCCTTGTTGTTAGAATATAATATAAAACCATTAAAGTGACCCTTACCTAACAGTTTAAGCTTTTGGG ATTAAGTGGTTATTTGACATGGTATCAGAGCCTCTATGGCCGAGAGGTCTAGAGTTCGATCCTTGCTCCCCTCACTTTCT AATTAAAAGTGAGATTTAATTAAGCACATGGTAGGCGGGCCTGTGCATTTATCCACGCTTCAAGCCCAAAGGGCTCTTGC GTGAGGGGACGTGTTAGAATATAATATAAAACCATTAAAGTGACCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGG TTATTTGACACTTGTCTTATATCACATATAATATTTCTTTTCATTTTTCACTCCTGGTGTCTCCTATGTGAATAGAGACA AATAATTTTCCTTAATTCATGACACTAATAACATGTGACTGAATAAGCTTGTCTCTCTGTTATGGTATCAGGAAGATGAC AAGGCAAAACTTGTGGAGGAGACGGGTTTGCAGCTGAAGCAGATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTG GCACAGCAACTCTCAATCGGTTACCTCTTTGAAGTCCAAACGCAAGAGGTAGTACATATAATTTGTCCCTAACTATATAT ATTAATGGATCCTATCCTTGATAGCAATACAACTTACATGGACATGCTTTATGGTGATAGAATGTAGTCCCACTAAGGAT TCCAGTCAGATGCAGGAGATAGTAGATCATAGCTTGAACAGGAGCTGGATGTAAATTTGTGGAATATAGCGCATGTTTGG TTTCACGATTCCCACATAATTCAACGCACCTTTATTCAGAAGCTGAGACTTGTAGCTTCTAACCAGAAATGATTCTAGAG TATTTCATCGCGGAACAAAACATGCTATTAACCTATGCAAACTTTTCTGTTTAGGTGTGTGGTTTTTAACTGTCTTTGTA AATTGTTTGTTACGTTTCTGACCGGCTGAAGAACTATTACTATTATTATACAGAAGTTTGAAAGATTGACGATTTATTTT TACTATATTTTCTTTTGTCCTATATTTCAAGAACTTGGATCCTTTCCAGCATAAATGTGTGCAGCAACCCGCCTGCAGAC TTTGAACCATTGATTTCTGAAATCAATGGCCAAGGTTATTCAAACTAAAAAAATAACTTAATGATTAAAATTCGTTAGTG TTTAAAGGGGTTGGGTAGCTGGAGTGGCCGGGGACAATCCAAATCCTACAAGAATATGTCGTGATTCACCTAGGCCGAGG CTGCATGTTTGAAAAATTTTCTGTTTCTAAAATTAATTATACGAATAGATTCTTTGAAAAACTTCTCGATATCAAAATTG ATTATAATAAAAGTGAAGTTAAGCTATTGTCAATTTATTGATCAAGCATAGAATTGATGATATAGTTGAATATGCCTCTA CCGGTAAAAATGAGTCGAAAGAAAATTTTGATTTAGCTAACTGTTCTAACTCAAAAAAAATGTTAGATTGAGGATATAAC ATTTCTACATAGGAAGATGTTCCAAATGCTCATTTCTGCAGAGGAAAGATATATAATAAAAGCATCAAAACACATCACAA GTGAGTGTATATCACTCACAACATGCTCTTATGATCTTATCTAAGAACACAATGCTAAACTTGTTCTTTCTCAAAACAGA GAAGCAATTCCATTTTTCCAATTGGAAGACTATAAACACCATCCAAGGATCTAAAGGAATCACTGAGAGGAATATGTGAT CTAAATTGAATTAACTTATCAAGGTGTTTAAACTATATGCAACTAATTAAATCATCCCCCAACATAAAAAATAGTTACAT TTTTGGTAAAGAAAAGTATAGTGTAAAAGAGACTTGATCTTTGTAATTAGCAATATCACTACATAAGCACCATTCCATGT TTATATTCCTGCATGATTAGTC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0430100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAGAACCCAACCTCGGAATGATGGGCGGTGGTTTCACCGGTGATGTTTCAGCTTCCGGCGACCACCACCACCGCCA ACTCAAGGCTGAAATCGCCACTCACCCTCTCTACGAACAGCTTCTCGCAGCACACGTCGCGTGTCTCCGAGTCGCCACTC CGATCGACCAGCTTCCACTAATTGATGCGCAGTTATCTCAATCTCACCATCTTCTCCGCTCGATTGTCTCTCAACACACT CACTCTCTTCCTCCGCATGATCGCCAAGAACTTGATAACTTCCTGGCACAGTATTTGATTGTTCTGTGTACCTTCAAAGA TCAGCTTCAGCAGCATGTCAGAGTTCATGCCGTCGAGGCTGTCATGGCTTGCCGTGATATTGAAAACACCTTGCAGGCTC TCACAGGAGTCAGTTTGGGAGAAGGAACTGGTGCCACAATGTCAGATGATGAAGATGATTTGCAGATGGATTTTTCTTTA GATCAATCTAGCACTGAAGGGCATGACATGATGGGATTTGGTCCCTTACTTCCTACAGAATCTGAAAGGTCACTGATGGA AAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGGTTTTAAATCCAGAATTGAAGATGTAAGGGAGGAAATATTAA GGAAAAGAAGAGCTGGGAAATTACCTGGTGACACAACTACAGTTTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCT TACCCAACAGAAGATGACAAGGCAAAACTTGTGGAGGAGACGGGTTTGCAGCTGAAGCAGATTAATAATTGGTTCATCAA CCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTTTGAAGTCCAAACGCAAGAGAATGTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0430100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQEPNLGMMGGGFTGDVSASGDHHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSIVSQHT HSLPPHDRQELDNFLAQYLIVLCTFKDQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSL DQSSTEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWP YPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11850
1 289 289 2.2E-143 –
PANTHER
PTHR11850:SF74
1 289 289 2.2E-143 –
SMART
SM01255
26 70 45 1.7E-19
IPR005540
Pfam
PF03790
28 69 42 7.0E-18
IPR005540
SMART
SM01256
81 136 56 1.3E-22
IPR005541
Pfam
PF03791
85 135 51 2.0E-17
IPR005541
ProSiteProfiles
PS51213
192 212 21 9.132
IPR005539
Gene3D
G3DSA:1.10.10.60
211 285 75 9.9E-23 –
ProSiteProfiles
PS50071
212 275 64 11.677
IPR001356
SMART
SM00389
214 279 66 1.3E-10
IPR001356
SUPERFAMILY
SSF46689
214 279 66 3.38E-16
IPR009057
CDD
cd00086
215 276 62 4.3757E-12
IPR001356
Pfam
PF05920
232 271 40 1.1E-17
IPR008422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0430100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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