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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0430100 |
| Transcript ID | LotjaGi2g1v0430100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein knotted-1, putative; TAIR: AT1G62990.1 homeobox knotted-like protein; Swiss-Prot: sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7; TrEMBL-Plants: tr|A0A0L9UPV4|A0A0L9UPV4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0430100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:92714200..92718781) extracted from Lotus japonicus Gifu genome v1.2.
GAGATGCAAGAACCCAACCTCGGAATGATGGGCGGTGGTTTCACCGGTGATGTTTCAGCTTCCGGCGACCACCACCACCG CCAACTCAAGGCTGAAATCGCCACTCACCCTCTCTACGAACAGCTTCTCGCAGCACACGTCGCGTGTCTCCGAGTCGCCA CTCCGATCGACCAGCTTCCACTAATTGATGCGCAGTTATCTCAATCTCACCATCTTCTCCGCTCGATTGTCTCTCAACAC ACTCACTCTCTTCCTCCGCATGATCGCCAAGAACTTGATAACTTCCTGGTTGGTAACAAATTGAACAATTTTCATTTTCT CATATTTAGCTTCGTCAATCGGTTTATTTGATGGATCCATGTTGAATACTGTTGCAGGCACAGTATTTGATTGTTCTGTG TACCTTCAAAGATCAGCTTCAGCAGCATGTCAGAGTTCATGCCGTCGAGGCTGTCATGGCTTGCCGTGATATTGAAAACA CCTTGCAGGCTCTCACAGGTACAATTCATTACAACCTCTGCTTTTTCTGTCTCAAATTTTACTCAATCACAAGTTTCATT CACAAACCAATTTTTTCCAATGTTCTTTTTGTTTTTATGCTTTCATTTGATTTGAAGTGATGAACATGCTATTATATATT TACTGAAAAATATCATATCATTTATATTAATTTAAAAAATAATAATTTATTTTTAGGTATTCATACTGCTTTTCGCTGTA ATTAGGCGCGTTGACATGATGGCTCAACAGTTCATTCTTTATGCAATTGGTTTCGGTTCGATTCCCAATTATTGTGAAAA GAAAAAATTTCTTCACTAGTCTCATATTGCATTGTCTCAGAATTGAGAGATTAGTTTCATGGCATAGGTGATGTGAGATA CATTAGTTAAGGGAAAAAAAAAACTAATTTCTCTATAATAATTATCCCTTATTTAATTTGTATGCCTTTTTTCTTTGTTT CTTGTGTTTGATGCGATTTGGGAGCAAGGGAAGAAGCTATATGATATGATGATAGTGTGTGTGTATATACAGATTTTCTT TTCTCTTTGTTTCTTGTGTTTGATGCGATTTGGGAGCAAGGGAAGAAGCTATATGATATGATTATAGTGTGTGTGTATAT ACAGATTTTCTTTTCATTATTTTGGTGGATTGAGACAAATGAAGGAAGTGGGGTATAGTAGGGTCTGTAAGTGTCCATCA TGTGGAAGAGTATACATAAATTAAATAGCACCGGGAAGGGTTGGTTTGGTAGGGAATGATACTCCCTTCCTCCATGGCAA CGCCAACAACTAATGCAGTAACCCAAATTTATTGTTCCCAAGGATGCAGTTTTCAGTCTAATTTGTCACATGCGTGTGTT AATTTTAGTTGCATATCCACATTATCAAAAAGTGGAACAAATGGAAATTAGACAAAGCACGAGAGATAGCAATGATTGTC TGTTAGAATTAGATACAGTAATTAAGAGGGACATTTGTAGGGTTGATTGGCTGTCCTCTCATGTTTTCCCTGCCATGGAA AAGCTAATCCCAAAATTTTAGGCTTATCCGAATCAGCCTTTCAATCTGATTTGTCCTGCCACTGATTCCAATATTTTGAT TTGTCATGAGCTTGCCTTTTCTAGCCCTGATAAACAAGCATTGTCTATCGGGATGATAAAAGTTATTTATCATAATCCTA TTACTGGACATACTTGCATATGCATTAGCATGTGAATGAATATATTGCACTATCTTACAATCTATTTTGTACGTTGAGTC CACAAGAAATTCAACATAAATTTAAACACACATTTAATTTGGGAAAAAACTTTTTTGTTCATGAATTTTAGAATTGATAA AAAAGACAAGTTGATCCTGTTAATAATTTATTAACAACATTTAACATATCCCTCTAAATTAAAGACCATATTATTTTTTA AGGAAAGATTAATACACGTCTAAGTATATTTGTATATGGGTTGATGTTAGTTGTAAGGGGTGTATGCATTTCTTAAGAAT GGTGATAAATGTGTTTTACAGTAAATAATTGATAAATGAAAAATATATGAGATCTTTGATTTCTTTCAATGTTAAAAAAT CTAATAAATATATTTTAGGAAAATAAATCTCATCCACCTCAATTACTCCTCCACCTAGTCAAATATAAAAATAGAAGAGA GATAAGTGAAATACATGATGAATGATATGATTTGGAAAAGAAGAGCTATAAGAAAAAAATGGGTAGAAGGGAGATAGAAG AGAATGTGAGTGAATATATCAATTTTATCGTGAAAATTCTAATTTAACCAGGCATGTCTACTTATTTTTGGTTGTTTCTG TGTTAGCTTTTCTTATCAAATTATATATGCATCTCATCATTTATAATGATATGAAAAACACATAATAATGACTGCAAGTG GGACTGAGGCGTTATTCAACTGTCCCTTTTGGACGTCTTCAAAGTTACCCCACTTTAGGAGAAAATGGCTGGTCAATGGA GTTTGTGAAGTATGATTGAAAAAAGATGGCTGATAATGTGCATCATTGATGGTTATTGACAATGGAAACTAAAACTTTGT GCGGTCCTTTATGTATGATTAAGATGTATCGAACATTTCTGCATAATTTTGTGACCCCATTCCATCATGGATCCACCAAC AAAAGGGGTCAGAGACCATAATTAACTAGGTTTGCTAACTATATCTTCTATAATTTTAAATGATAAACTGGTTAGGCCTG GATATATATCTTCGCATTTTACTGTTGGTATTTTAATTGTAACTGAAATTTTTTCTGTCATAATTCTTTTCAATGAGGAA CTACAAAGTGAAGCTAAACAAATGAGGTTAATAGTTAATATACATAAACTAGGTGATTCTTACCTCAAAGCTTACATAGC TAACCTTTTCCTGACACAATGTTGGTGCTCAAAATTTCACCCTTAACATTCTACCGGTTAATTATGGATTATAAGTTATA ACAATCAGAATAGATGCTCTTAGTCAATGTTGTTCACTTGTTTGGCACAAAATCTCACATTATCAGTTGTTTTTTTCTTC AAATATTCTCAAATTTAAGCTGGTTCAGTATTTACATTTCAGGAGTCAGTTTGGGAGAAGGAACTGGTGCCACAATGTCA GATGATGAAGATGATTTGCAGATGGATTTTTCTTTAGATCAATCTAGCACTGAAGGGCATGACATGATGGGATTTGGTCC CTTACTTCCTACAGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGTCATTA ATCTTATTCTTATAATCAATATCTTCTAGCTGTTCTTGCAGGTGCCAGTGAATGTTTGTCCTTTGAATCACCAACCAGAT TTGATTTCTGCAGGGTTTTAAATCCAGAATTGAAGATGTAAGGGAGGAAATATTAAGGAAAAGAAGAGCTGGGAAATTAC CTGGTGACACAACTACAGTTTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACAGTAAGTGAACAGCTT CTTCACCAATATTAAGATCCCGTTCAATATGAGCTTATTGGTGGTTATCTACTAGAAAAAAAAAAACACTAAATAAGCTC TGATGAACTCTATAAAATGTCCTTTGATTTGTATCCAAATGGGTTTATTTAAGCCTGTAACCGTTTGGATATAGACCAAA TAACACTTATTGGAGTTTAAGCCTGTTTGGATACTGACTTATTGGAGTTTAATTTACTATAAAAAACACTAAATAAGCTC TTGTAAGTGCTATTCTGTTTGCACCCAAACGGGTTCTTTATGTACTAGAAAGAACACTATAAACTCAAATAAGTGTTTTG ACCTTTATCCAAACAGTTCCTTATCTTATAGCATAATTACTTATTCAAATTGTAAGTAAACTTATTAGAATAGTTTATAT AACCTACCTATTTAACTCTTGAGTTTTTTTATAAGTCGTTAAGATTAGCTTATGGAAAAATGTTCCTTGTTGTTAGAATA TAATATAAAACCATTAAAGTGACCCTTACCTAACAGTTTAAGCTTTTGGGATTAAGTGGTTATTTGACATGGTATCAGAG CCTCTATGGCCGAGAGGTCTAGAGTTCGATCCTTGCTCCCCTCACTTTCTAATTAAAAGTGAGATTTAATTAAGCACATG GTAGGCGGGCCTGTGCATTTATCCACGCTTCAAGCCCAAAGGGCTCTTGCGTGAGGGGACGTGTTAGAATATAATATAAA ACCATTAAAGTGACCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGGTTATTTGACACTTGTCTTATATCACATATA ATATTTCTTTTCATTTTTCACTCCTGGTGTCTCCTATGTGAATAGAGACAAATAATTTTCCTTAATTCATGACACTAATA ACATGTGACTGAATAAGCTTGTCTCTCTGTTATGGTATCAGGAAGATGACAAGGCAAAACTTGTGGAGGAGACGGGTTTG CAGCTGAAGCAGATTAATAATTGGTTCATCAACCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTTT GAAGTCCAAACGCAAGAGGTAG
CDS sequence (LotjaGi2g1v0430100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGAACCCAACCTCGGAATGATGGGCGGTGGTTTCACCGGTGATGTTTCAGCTTCCGGCGACCACCACCACCGCCA ACTCAAGGCTGAAATCGCCACTCACCCTCTCTACGAACAGCTTCTCGCAGCACACGTCGCGTGTCTCCGAGTCGCCACTC CGATCGACCAGCTTCCACTAATTGATGCGCAGTTATCTCAATCTCACCATCTTCTCCGCTCGATTGTCTCTCAACACACT CACTCTCTTCCTCCGCATGATCGCCAAGAACTTGATAACTTCCTGGCACAGTATTTGATTGTTCTGTGTACCTTCAAAGA TCAGCTTCAGCAGCATGTCAGAGTTCATGCCGTCGAGGCTGTCATGGCTTGCCGTGATATTGAAAACACCTTGCAGGCTC TCACAGGAGTCAGTTTGGGAGAAGGAACTGGTGCCACAATGTCAGATGATGAAGATGATTTGCAGATGGATTTTTCTTTA GATCAATCTAGCACTGAAGGGCATGACATGATGGGATTTGGTCCCTTACTTCCTACAGAATCTGAAAGGTCACTGATGGA AAGAGTTCGTCAGGAACTAAAGATTGAGCTGAAACAGGGTTTTAAATCCAGAATTGAAGATGTAAGGGAGGAAATATTAA GGAAAAGAAGAGCTGGGAAATTACCTGGTGACACAACTACAGTTTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCT TACCCAACAGAAGATGACAAGGCAAAACTTGTGGAGGAGACGGGTTTGCAGCTGAAGCAGATTAATAATTGGTTCATCAA CCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTACCTCTTTGAAGTCCAAACGCAAGAGGTAG
Protein sequence (LotjaGi2g1v0430100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQEPNLGMMGGGFTGDVSASGDHHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSIVSQHT HSLPPHDRQELDNFLAQYLIVLCTFKDQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSL DQSSTEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHAKWP YPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 2.2E-143 | – | |
| PANTHER | 1 | 289 | 289 | 2.2E-143 | – | |
| SMART | 26 | 70 | 45 | 1.7E-19 | ||
| Pfam | 28 | 69 | 42 | 6.9E-18 | ||
| SMART | 81 | 136 | 56 | 1.3E-22 | ||
| Pfam | 85 | 135 | 51 | 2.0E-17 | ||
| ProSiteProfiles | 192 | 212 | 21 | 9.132 | ||
| Gene3D | 211 | 285 | 75 | 9.9E-23 | – | |
| ProSiteProfiles | 212 | 275 | 64 | 11.677 | ||
| SMART | 214 | 279 | 66 | 1.3E-10 | ||
| SUPERFAMILY | 214 | 279 | 66 | 3.34E-16 | ||
| CDD | 215 | 276 | 62 | 4.70584E-12 | ||
| Pfam | 232 | 271 | 40 | 1.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0430100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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