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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0434400 |
| Transcript ID | LotjaGi2g1v0434400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bromo-adjacent-like (BAH) domain protein; TAIR: AT4G11560.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|G7KC24|G7KC24_MEDTR Bromo-adjacent-like (BAH) domain protein; Found in the gene: LotjaGi2g1v0434400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93081964..93086111) extracted from Lotus japonicus Gifu genome v1.2.
CTAATTTACCCTTTGGGTACTGTCTGTGAGATATGCGTGACTCCAGCGGTATATAAATTGCGGGAGACAACGAGAAGAAG ATGCTACTCATCGGCAATCTGTGTGAGAGAGAGAGAGAGCAATTCTGATTGAATAATTCAAAGCGCTGTCGTTTCGCTTC CGTCGTTGCGCGTTGATCGGGGAAGGAGAAAATGGTGAATCGACGGTTCACTCAGGTCGCCACCAGCGACGATGAAGAGG AAGAAACGCCACCTCAGCAATTGAAGCCGCGCAAAAGGAAGAGGATGAAGCTTCTGGAGGAAGACAACGAAGACAAAGAT GGAGAGGATTACGAGGAGGAAGAGGAGAAGAAGAAGAAGAAAAAGTCCAGGAAGAAGAAGGAAGAGGAAGAAGAAGAAGA ACAAGAGGAACCGGAATCGCCGCAGCCTCCGGAGGACGCTAAGCCCATTGGTGATCCGGTTAGGTTTTCAGGGAAAGGAA GGGGCAGGAAGAAGCATTTCAATTCCTTCGAGTTCGATGGAAGTCAATACACTCTTGTAATAAATCCCCATTTTCTTTCC AATTTCTTCCGAATTTCATTTCAATTTTATGATTCAATTCGAATTTTCTGCAGGAGGATCCTGTTCTTCTTGTGCCTGAG GATAAAGAACAGAAACCCTACGTCGCTATTATTAAGGTAAATTCTCAATTTGATTTCACTTCGCTATAGTTTTGGATTGT TATCTGATCTGTGAGAAAAAGTAAATACCTGATTGATTGTGATTATAAATTTGATCAGTGTTTGGTGGAGGTAGCTTATA GTATACAATCATAATCATGTTATTGTTATGTTTGTGATTGTGCTACTGCATTCATGTAATTTCATAACACTGAATTTATG AAGGGTCTTTTGCCCCCTTTTACTTTTTTATCCTCTTCATTGTCATGCTAGCCTAGGCCTAGGTTCATGGTTTAGTTTGG TTATGTAGTGCATGTTTAGTTTGACGTTAGCCAACGTGATTTCACATATCTCAATGCACCAACGGAGAAGCAGTATTTTG ACATGTTGGATTCAACTAGGTTCCACGTCGAGTTCAACTGAAATACACACGCACACTTACTCATTTTCTTTATTGTTTAC TACATAATTACCTCCTTTCAAGTTTCAGTATCCATACTCTGATGTTGTTGTTCGGCGTTTCAGGATATAACTCAGCCTTA TAATGGCAACATCATGGTGACGGGGCAGTGGTTTTATCGTCCTGAAGAAGCTGAGAAAAAGGGTGGTGGAAGCTGGATAT CACGTGATACGAGGGAGTTGTTTTATAGCTTCCACACGGATGACATCCCTGCAGAGTCTGTTATGCATAAGTGTGTGGTA CATTTTATTCCCTTACACAAACAGCTTCCAAAAAGGAAGGAACATCCCGGATTTGTTGTACAGAAGGTGTACGACACTGT GGAAAGAAAACTCTGGATGCTGACTGATAAGGACTATGAGGATATTAAACAGCAAGAGATTGATGAGCTTGTTAAGAAAA CTGTGGAACGTATCGGTGAACCACTCGACGTTGAGCCTGAAGATGCCCCTGATGATCAAGAAGACCTGGTGAAAAATAAA AGAAGTTTAAGGAGAAAGAGTGTTTCACCACCTGATGTTTCAAAGGAGGAGGAAGGAGTTCCTAAGAGTGACCAGCATCC AAAGCCTGAAACACCAGGGAGTTGTATAAATAATGCCTCAGAGCATTATCGCATATTAGTGAGTTTCAATGCTCTAACTG GAGATGTTCAGCGTGACAAATGGTTGGAGAGATCTCTTCAACACCTTCAGTACATGTGTAGTTCTGATGATAGTACAGAA AGGGACAACAAAGGATCAAATGTCAATTGTGATGAAATCAAGCATCAAAACAGTAATACAAGTTCAGAAATAGCAAATGA CTGTCAAGACAAGGGTCAAAAGGTATGAAAATTCTGCATTAATAGGCGTTATCAACCATTTTTTTCTCATCTTGTTCTTT CTGTTTCCTATTTCCTTAAAGGGTATATAAATTCTGTCTTTATGTTATTTTTTTCTCTGCAGAGTTCCAAGCCTTTTAAA TGGCCAGATGCTGCTGTTTCAGCCATAGTTGCTCTTGAAAAAGCTTCACATGATGCTTTCTCATCAGATTTTCAGAAGTA TAACCAAAAGTTACGGCAATTAACTTTTAATCTCAAGGTAAGATGCTGGCCTTCTACATTGTACCTAATTATTGTATTTC GTAAAAAAAATACTGCATATTGCTTCTACGTCTAGAAGCCGGACTTTTGAACTTGTGATTTTTGTTCATATTTTCTAATT AAAGCTATGTCTAGAAGGTTAAAAGTCTGAAACAAAAGTATTGTCTCTATTCATAATGGATAGAAGATAAATCAGAATGT TGGAAGACCATGCTGTTGCATACTACGTAATTTATATGTGCACAAAACACACAACATGTATGTTCAGTTTAAGTGTAATG CCTATCATGGAATGAGAGGGAAAAACTGTCTTGCTGTAAATTTCCTCAATCTTTTATCTATATCTTCACTTCAGCACAAC CAATCCTCTTGGGTGATTTTGGCGCGAGAAATCAATATAGCAGCATCATGGTGATAACTATATTGTTCTTAGCTTGAAAA TTTAGATATGATTTTCTGCTGTGACAATGATGAATTGATTATATTATTCTATCTTTTTATTGTGTTCTTGGCAGAACAAT GCATTCCTAGCTCGTCGTCTATTAAATGGAGAGCTGGAACCTTCCAAAATACTAAATATGACATACAGTGAATTAAAGGT ATGCTTTCTATCTGGATTTCTTTTTTTAACCAAAAACTCAATGGAACTTTTGAGCTGTCAGCTTATGATGAAATGGTTGA ACTTGTTTCGTAGATTTTCTACTGCTATTTTCTGGTTTAAGCTAGTGGCAATGTGGCCTCATTCTTTTCATTCATGTATT ATTATTCAGCCTTCTACTTTAGTCTCTAGCATATTCTGCCCCTTTGACTTATCACTTTACCCTAATAAAAGATCTGGATA CACTTCTCACTTGGATTTTATTGAGGTTATGTGGTAGTCTTTGTTTCTCAAAACTTACAAGCTGAAAGATTTAATTGTCG AAGGCTCTCTTTTTATTTGAGAATTAATTAGGTTAAAAGTTGGAGCATTTCTATCATCAGTTTTATAAGCTGTTTCTGAA ATATTTAAACTGCTTGTTGGTTGTGTGGTTTCTTCTGGACATCTGCTAAATAAATGAACTTCAGGAGGGTTTGACTGCGG AGGAAAAAACCAAGAAGGAGCCGGATGAGTCAGAGCACATGCAAGTAAGTTTTCCCCTCTCAAATTCCATTATCTCTTAT GTTGTGTGAAGAATGATATCTACTGACTTCAGCTTTCCCACCCATGAAACAGATGACAGATGCCCGCTGCTCAAGATGTA TGGAGTTTAAGGTGGGATTGAGGGACATTATCCATGCTGGACATAATGACCGTTATCAGGTTTGCATTTTTCTATTTTAC CCAAGTTCAGAATTCCAAAAGTACCTTAAATGTGTACTCTACTTTTATGACTTGGTTTGATTGTTTGGTGCTCTGCTTTT TTTTTCAGCTGGAATGTGTTTCCTGTGGTAATTCCTGGTATGCCTCCCGGGATGAGGTATCTTCGCTAACCATAGATGGA TCAGATTCAAAGAAAAGCATAGGCACAGCGCCATGGGCCACTGCAAAATTTGAAGTTATTCAGAAGAAGCTGCTGAGCCC CCGCGAATCTGAAAACTCAGCCAATGATATATCTGGGAAAACAAATGAATTGGGTATCGCCGTTAATGACACCCAGAAAC CAATTGGCATGCCCAAGAAAGATGAGAATGTTGAGGCTACACATGCAGACTAGTTCTGTCCAGTGTTTTAAAATGAGATT TTTGTTCCAGAAGATTGTTATGTATAGTTCTCTTCCTGCTTGATTAGAGTGCACATAACAAGCGGTTTGGTTTTGATGTT ACCTCAAAACATCATAAGGGTAGTTTTAGTTACATCGCTGCAGTAAATTTATTAGCTTACTTTGACTCTAGATATAAACT TTTTATATCGTTATTATACAAATAAAAAATTCCAATTAGTAGTAAAACTTCGTTCCTTTTGTTTTGTA
CDS sequence (LotjaGi2g1v0434400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAATCGACGGTTCACTCAGGTCGCCACCAGCGACGATGAAGAGGAAGAAACGCCACCTCAGCAATTGAAGCCGCG CAAAAGGAAGAGGATGAAGCTTCTGGAGGAAGACAACGAAGACAAAGATGGAGAGGATTACGAGGAGGAAGAGGAGAAGA AGAAGAAGAAAAAGTCCAGGAAGAAGAAGGAAGAGGAAGAAGAAGAAGAACAAGAGGAACCGGAATCGCCGCAGCCTCCG GAGGACGCTAAGCCCATTGGTGATCCGGTTAGGTTTTCAGGGAAAGGAAGGGGCAGGAAGAAGCATTTCAATTCCTTCGA GTTCGATGGAAGTCAATACACTCTTGAGGATCCTGTTCTTCTTGTGCCTGAGGATAAAGAACAGAAACCCTACGTCGCTA TTATTAAGGATATAACTCAGCCTTATAATGGCAACATCATGGTGACGGGGCAGTGGTTTTATCGTCCTGAAGAAGCTGAG AAAAAGGGTGGTGGAAGCTGGATATCACGTGATACGAGGGAGTTGTTTTATAGCTTCCACACGGATGACATCCCTGCAGA GTCTGTTATGCATAAGTGTGTGGTACATTTTATTCCCTTACACAAACAGCTTCCAAAAAGGAAGGAACATCCCGGATTTG TTGTACAGAAGGTGTACGACACTGTGGAAAGAAAACTCTGGATGCTGACTGATAAGGACTATGAGGATATTAAACAGCAA GAGATTGATGAGCTTGTTAAGAAAACTGTGGAACGTATCGGTGAACCACTCGACGTTGAGCCTGAAGATGCCCCTGATGA TCAAGAAGACCTGGTGAAAAATAAAAGAAGTTTAAGGAGAAAGAGTGTTTCACCACCTGATGTTTCAAAGGAGGAGGAAG GAGTTCCTAAGAGTGACCAGCATCCAAAGCCTGAAACACCAGGGAGTTGTATAAATAATGCCTCAGAGCATTATCGCATA TTAGTGAGTTTCAATGCTCTAACTGGAGATGTTCAGCGTGACAAATGGTTGGAGAGATCTCTTCAACACCTTCAGTACAT GTGTAGTTCTGATGATAGTACAGAAAGGGACAACAAAGGATCAAATGTCAATTGTGATGAAATCAAGCATCAAAACAGTA ATACAAGTTCAGAAATAGCAAATGACTGTCAAGACAAGGGTCAAAAGAGTTCCAAGCCTTTTAAATGGCCAGATGCTGCT GTTTCAGCCATAGTTGCTCTTGAAAAAGCTTCACATGATGCTTTCTCATCAGATTTTCAGAAGTATAACCAAAAGTTACG GCAATTAACTTTTAATCTCAAGAACAATGCATTCCTAGCTCGTCGTCTATTAAATGGAGAGCTGGAACCTTCCAAAATAC TAAATATGACATACAGTGAATTAAAGGAGGGTTTGACTGCGGAGGAAAAAACCAAGAAGGAGCCGGATGAGTCAGAGCAC ATGCAAATGACAGATGCCCGCTGCTCAAGATGTATGGAGTTTAAGGTGGGATTGAGGGACATTATCCATGCTGGACATAA TGACCGTTATCAGCTGGAATGTGTTTCCTGTGGTAATTCCTGGTATGCCTCCCGGGATGAGGTATCTTCGCTAACCATAG ATGGATCAGATTCAAAGAAAAGCATAGGCACAGCGCCATGGGCCACTGCAAAATTTGAAGTTATTCAGAAGAAGCTGCTG AGCCCCCGCGAATCTGAAAACTCAGCCAATGATATATCTGGGAAAACAAATGAATTGGGTATCGCCGTTAATGACACCCA GAAACCAATTGGCATGCCCAAGAAAGATGAGAATGTTGAGGCTACACATGCAGACTAG
Protein sequence (LotjaGi2g1v0434400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNRRFTQVATSDDEEEETPPQQLKPRKRKRMKLLEEDNEDKDGEDYEEEEEKKKKKKSRKKKEEEEEEEQEEPESPQPP EDAKPIGDPVRFSGKGRGRKKHFNSFEFDGSQYTLEDPVLLVPEDKEQKPYVAIIKDITQPYNGNIMVTGQWFYRPEEAE KKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFIPLHKQLPKRKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQ EIDELVKKTVERIGEPLDVEPEDAPDDQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHYRI LVSFNALTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSEIANDCQDKGQKSSKPFKWPDAA VSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAFLARRLLNGELEPSKILNMTYSELKEGLTAEEKTKKEPDESEH MQMTDARCSRCMEFKVGLRDIIHAGHNDRYQLECVSCGNSWYASRDEVSSLTIDGSDSKKSIGTAPWATAKFEVIQKKLL SPRESENSANDISGKTNELGIAVNDTQKPIGMPKKDENVEATHAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 98 | 98 | - | – | |
| PANTHER | 1 | 546 | 546 | 2.7E-291 | – | |
| PANTHER | 1 | 546 | 546 | 2.7E-291 | – | |
| Gene3D | 6 | 213 | 208 | 6.8E-36 | ||
| MobiDBLite | 18 | 38 | 21 | - | – | |
| Coils | 44 | 73 | 30 | - | – | |
| MobiDBLite | 48 | 67 | 20 | - | – | |
| CDD | 93 | 239 | 147 | 8.50511E-77 | – | |
| ProSiteProfiles | 111 | 230 | 120 | 19.806 | ||
| SMART | 111 | 230 | 120 | 1.8E-21 | ||
| Pfam | 112 | 226 | 115 | 1.5E-13 | ||
| MobiDBLite | 256 | 311 | 56 | - | – | |
| MobiDBLite | 268 | 300 | 33 | - | – | |
| Gene3D | 325 | 472 | 148 | 2.3E-9 | ||
| Pfam | 333 | 480 | 148 | 5.3E-17 | ||
| SMART | 366 | 471 | 106 | 2.1E-9 | ||
| ProSiteProfiles | 379 | 489 | 111 | 22.644 | ||
| SUPERFAMILY | 396 | 462 | 67 | 3.01E-12 | ||
| MobiDBLite | 561 | 605 | 45 | - | – | |
| MobiDBLite | 561 | 583 | 23 | - | – | |
| MobiDBLite | 590 | 605 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Expression pattern of LotjaGi2g1v0434400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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