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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0444400 |
| Transcript ID | LotjaGi2g1v0444400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G22470.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial; TrEMBL-Plants: tr|A0A0R0IGR1|A0A0R0IGR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0444400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93978356..93980624) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGGAACAAAATTCAGCCAAAATTAGTATAGTTATTTAGGAATAGAGGGAGTAATTAGGGACGGAGGGAGTACTAGAT AGAGATGAAAAAAAAAAATCAGATTATTTTGGTTTTTAATGGTCCAAGAGCCTATTTTAAATCACACTCCATAGTTCAAA AAAAAAATCATACTCTCCATAGTATAGTATTTAAATATATCATAAATCTATTTCAAATTAGACTAAGATCCTAAAATAAT TATGTGTGTTTGGAAAACTCATTCAGGATCCACGTTTGACCCTGATCCACGTTTACAGAAGCAAGAAATAGTTGCTTTTG GATTTTTCGATCCACGTTTGGCCTCTCCAGATTTGAAACCAAACACACACTATATATGTTAAAAATGTAAAAACCCATTT GATGAGCCACTGACTTGTTTTGTAAAACATCGGACACCAAATTAAAGGGAATTAGGTTTGACACCCCACCTATTGGGTTT CGCACCCCACTTTATTAGAAATGAGAATTAAAATTCCGAATTTAATACGAAAAAAACGGAAATTAAAAAACCGTTCTTTA TTGCACTCTTGTGTTGTGCAAAATAGTACAACATAGAAACCAGAGACAGTTCCTCCTCAATCTCATCCTCCACGAAGAAC AGAACCATGTCGATGTTCAGGTTAAGAATGTTTCCCTTTCTTTCTAGATCACTTCTTACCTTTCAATCACACTCTCACTT TCACTCTCAAAATCAAAATGCTCCTTCCAAATTCAATGTTGGTGATGCAATCTCCTCGTTCAATCGCATGCTCCAAATGC GTCCTTCTCCACCCATTATCGAATTTAACAAGTTTTTTACTTCCCTCGTCAAGACGAAGCATTACGCCACCGCCGTTTCC CTTTCTCAACAAATGGATTTCAGGAGAGTTATGCCTGACTTATTCACTTTCAACATCTTGATCAATTGTTACTGCCACCT AGGTCAAATTACTTCTGCTTTTTCTGTACTCTGCAATATTTTCAAGAGGGGTTATCAGCCTGATACCATCACCTTTAATA CAATTATCAAAGGTCTCTGTCTTCAAGGTGAGGTTCATAGAGCACTGTGCTTTCATGATGAGATTGTAGCACGGGGGTTT CTGTTGGATCAGGTTAGTTACGGGACCTTGATTAACGGGTTATGTAAAATTGGACATACAGGACCTGCACTGCAATTGCT CAGACAGATCCAGGGAAAATTGGCTCAACCTAATGTGGTAATGTACAGCACAATCATTGATAGCTTGTGTAAAGATAAAC TTGTAAGTGATGCCTACAATTTATACTCTGAAATGCTCGCCAAAAGAATTTCACCAACTGTTGTCACTTACAATACTCTA ATATCTGGATTTTGCATTGTGGGTCAATTGAAAGAAGCAGTTGGTTTGTTAAATCAAATGGTATTGAAAAGCATCAATCC AGATGTTTGTACCTTTACTATTTTAGTTGATGCTTTATGCAAGGAAGGAAAGGTGAAAGAAGCCAAAAATGTGTTAGCTG TCATGATCAAAGGAGGGGAAAAACTTGATGTTGTTACTTATAGTTCTTTGATGGATGGGTATTGCTTAGTTAAGGAAGTA CACAAGGCCAAAGATATATTCAACACCATGACCCAAAGGGAAGTGACCCCTAATGTTCAGAGTTATAGTATCATGATTAA CGGATTCTGTAAGATTAAAATGGTTGATGATGCCTTGAATCTATTTAAACAAATGCATACTGAAAATATAACTCCTGATG TTGTAACTTACAGTTCTCTTATAGATGGTTTGTGCAAGTCTGGGAGAATCTCTGATGCTTGGGAGCTTGTTAATGAGATG CACTCTAGAGGTCTACCACCTAATGTAATCACGTACAGTTCTTTATTGGATGCTTTATGCAAAAACCATCACGTTGACAA TGCAATTTCTTTGATCAAGAAAATGAAACACCAGGGTATTCTGCCAGATGTTTACACATACACTATACTCTTGGATGGAC TATGCAAAGGTGGAAGACTTAAGGACGCACAAGAGGTTTTTCAGGATCTTTTAATTAAAGGCTACAATTTAGATGTACGG ACGTATACCATAATGATTAATGGGCTTTGTAAAGACGGCTTATTTGATGAAGCATTGGCATTGATGTCAAAAATGGAAGA CAACGGTTGCACCCCTGATGCTGTAACATATGTGAAGGTATGAAAAACGGTAGAAAGGGGGGGTTTGAATAACGTTTTCA GAACAAGACTTCCACCTTAAAGATTTTGA
CDS sequence (LotjaGi2g1v0444400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATGTTCAGGTTAAGAATGTTTCCCTTTCTTTCTAGATCACTTCTTACCTTTCAATCACACTCTCACTTTCACTC TCAAAATCAAAATGCTCCTTCCAAATTCAATGTTGGTGATGCAATCTCCTCGTTCAATCGCATGCTCCAAATGCGTCCTT CTCCACCCATTATCGAATTTAACAAGTTTTTTACTTCCCTCGTCAAGACGAAGCATTACGCCACCGCCGTTTCCCTTTCT CAACAAATGGATTTCAGGAGAGTTATGCCTGACTTATTCACTTTCAACATCTTGATCAATTGTTACTGCCACCTAGGTCA AATTACTTCTGCTTTTTCTGTACTCTGCAATATTTTCAAGAGGGGTTATCAGCCTGATACCATCACCTTTAATACAATTA TCAAAGGTCTCTGTCTTCAAGGTGAGGTTCATAGAGCACTGTGCTTTCATGATGAGATTGTAGCACGGGGGTTTCTGTTG GATCAGGTTAGTTACGGGACCTTGATTAACGGGTTATGTAAAATTGGACATACAGGACCTGCACTGCAATTGCTCAGACA GATCCAGGGAAAATTGGCTCAACCTAATGTGGTAATGTACAGCACAATCATTGATAGCTTGTGTAAAGATAAACTTGTAA GTGATGCCTACAATTTATACTCTGAAATGCTCGCCAAAAGAATTTCACCAACTGTTGTCACTTACAATACTCTAATATCT GGATTTTGCATTGTGGGTCAATTGAAAGAAGCAGTTGGTTTGTTAAATCAAATGGTATTGAAAAGCATCAATCCAGATGT TTGTACCTTTACTATTTTAGTTGATGCTTTATGCAAGGAAGGAAAGGTGAAAGAAGCCAAAAATGTGTTAGCTGTCATGA TCAAAGGAGGGGAAAAACTTGATGTTGTTACTTATAGTTCTTTGATGGATGGGTATTGCTTAGTTAAGGAAGTACACAAG GCCAAAGATATATTCAACACCATGACCCAAAGGGAAGTGACCCCTAATGTTCAGAGTTATAGTATCATGATTAACGGATT CTGTAAGATTAAAATGGTTGATGATGCCTTGAATCTATTTAAACAAATGCATACTGAAAATATAACTCCTGATGTTGTAA CTTACAGTTCTCTTATAGATGGTTTGTGCAAGTCTGGGAGAATCTCTGATGCTTGGGAGCTTGTTAATGAGATGCACTCT AGAGGTCTACCACCTAATGTAATCACGTACAGTTCTTTATTGGATGCTTTATGCAAAAACCATCACGTTGACAATGCAAT TTCTTTGATCAAGAAAATGAAACACCAGGGTATTCTGCCAGATGTTTACACATACACTATACTCTTGGATGGACTATGCA AAGGTGGAAGACTTAAGGACGCACAAGAGGTTTTTCAGGATCTTTTAATTAAAGGCTACAATTTAGATGTACGGACGTAT ACCATAATGATTAATGGGCTTTGTAAAGACGGCTTATTTGATGAAGCATTGGCATTGATGTCAAAAATGGAAGACAACGG TTGCACCCCTGATGCTGTAACATATGTGAAGGTATGA
Protein sequence (LotjaGi2g1v0444400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMFRLRMFPFLSRSLLTFQSHSHFHSQNQNAPSKFNVGDAISSFNRMLQMRPSPPIIEFNKFFTSLVKTKHYATAVSLS QQMDFRRVMPDLFTFNILINCYCHLGQITSAFSVLCNIFKRGYQPDTITFNTIIKGLCLQGEVHRALCFHDEIVARGFLL DQVSYGTLINGLCKIGHTGPALQLLRQIQGKLAQPNVVMYSTIIDSLCKDKLVSDAYNLYSEMLAKRISPTVVTYNTLIS GFCIVGQLKEAVGLLNQMVLKSINPDVCTFTILVDALCKEGKVKEAKNVLAVMIKGGEKLDVVTYSSLMDGYCLVKEVHK AKDIFNTMTQREVTPNVQSYSIMINGFCKIKMVDDALNLFKQMHTENITPDVVTYSSLIDGLCKSGRISDAWELVNEMHS RGLPPNVITYSSLLDALCKNHHVDNAISLIKKMKHQGILPDVYTYTILLDGLCKGGRLKDAQEVFQDLLIKGYNLDVRTY TIMINGLCKDGLFDEALALMSKMEDNGCTPDAVTYVKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 9 | 19 | 11 | - | – | |
| Phobius | 20 | 23 | 4 | - | – | |
| Phobius | 24 | 518 | 495 | - | – | |
| Gene3D | 34 | 190 | 157 | 2.5E-33 | ||
| PANTHER | 41 | 175 | 135 | 1.8E-135 | – | |
| PANTHER | 41 | 175 | 135 | 1.8E-135 | – | |
| ProSiteProfiles | 56 | 90 | 35 | 5.919 | ||
| Pfam | 90 | 138 | 49 | 5.4E-14 | ||
| ProSiteProfiles | 91 | 125 | 35 | 11.4 | ||
| SUPERFAMILY | 92 | 428 | 337 | 3.64E-5 | ||
| TIGRFAM | 93 | 127 | 35 | 3.6E-7 | ||
| ProSiteProfiles | 126 | 160 | 35 | 10.358 | ||
| TIGRFAM | 128 | 161 | 34 | 3.1E-6 | ||
| PANTHER | 134 | 297 | 164 | 1.8E-135 | – | |
| PANTHER | 134 | 297 | 164 | 1.8E-135 | – | |
| Pfam | 156 | 187 | 32 | 1.1E-6 | ||
| ProSiteProfiles | 161 | 195 | 35 | 9.58 | ||
| Gene3D | 191 | 259 | 69 | 7.7E-21 | ||
| Pfam | 194 | 223 | 30 | 4.0E-9 | ||
| ProSiteProfiles | 196 | 230 | 35 | 11.356 | ||
| TIGRFAM | 198 | 232 | 35 | 2.1E-7 | ||
| Pfam | 230 | 279 | 50 | 6.6E-18 | ||
| ProSiteProfiles | 231 | 265 | 35 | 11.729 | ||
| TIGRFAM | 233 | 267 | 35 | 2.9E-8 | ||
| Gene3D | 260 | 330 | 71 | 1.7E-19 | ||
| ProSiteProfiles | 266 | 300 | 35 | 10.556 | ||
| TIGRFAM | 268 | 301 | 34 | 8.5E-6 | ||
| PANTHER | 282 | 421 | 140 | 1.8E-135 | – | |
| PANTHER | 282 | 421 | 140 | 1.8E-135 | – | |
| Pfam | 301 | 349 | 49 | 2.5E-16 | ||
| ProSiteProfiles | 301 | 335 | 35 | 11.542 | ||
| TIGRFAM | 303 | 337 | 35 | 1.8E-7 | ||
| Gene3D | 331 | 399 | 69 | 2.1E-25 | ||
| ProSiteProfiles | 336 | 370 | 35 | 12.529 | ||
| TIGRFAM | 339 | 372 | 34 | 4.2E-10 | ||
| Pfam | 370 | 419 | 50 | 1.0E-20 | ||
| ProSiteProfiles | 371 | 405 | 35 | 14.71 | ||
| TIGRFAM | 373 | 407 | 35 | 4.5E-12 | ||
| Gene3D | 400 | 469 | 70 | 1.5E-23 | ||
| PANTHER | 405 | 515 | 111 | 1.8E-135 | – | |
| PANTHER | 405 | 515 | 111 | 1.8E-135 | – | |
| ProSiteProfiles | 406 | 440 | 35 | 12.441 | ||
| TIGRFAM | 408 | 442 | 35 | 3.5E-8 | ||
| Pfam | 437 | 466 | 30 | 8.3E-12 | ||
| ProSiteProfiles | 441 | 475 | 35 | 11.816 | ||
| TIGRFAM | 443 | 476 | 34 | 9.4E-6 | ||
| Gene3D | 470 | 516 | 47 | 5.5E-13 | ||
| Pfam | 476 | 515 | 40 | 4.9E-13 | ||
| ProSiteProfiles | 476 | 510 | 35 | 13.987 | ||
| TIGRFAM | 479 | 512 | 34 | 1.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0444400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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