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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0447700 |
| Transcript ID | LotjaGi2g1v0447700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat cell cycle regulatory protein; TAIR: AT4G33270.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q9SZA4|CDC21_ARATH Cell division cycle 20.1, cofactor of APC complex; TrEMBL-Plants: tr|A0A0L9TAL3|A0A0L9TAL3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0447700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94176114..94178607) extracted from Lotus japonicus Gifu genome v1.2.
CTAACACCCATTTCCTCCACCATCACACTGCTATATATTCAGACCTCACATTCAGACCTCTCTCACTCACTCTCTCTCTT CTGTCTCTATCTCTCTCTAACGCTCTCTCTCGCTTCGCCATTACAATCGTTGATAATCACTTCTCTTTGATTTTCTTCAT TTTGCTTATTAATCTCTGTTTTGCAGGATTTCGATTTTGTTTTTCAATTAATTGATTCTATTTTATACATTTCTTTTTCC CTATTTTGTTCTATTTTTTCTCTAACAATGGACGCAGGATCTATGAGTTCTTCTGCTAACATCAAAACCCGATCACGCTT CCCTCTTCAGGAACAATTTCTCCAGAGAAAGAGTTCCCGGGAAAATGTAAGACAATTAATCCATCTCTCTCCCTGATTGT GTAATTTGTGTGTACTGTAGAATTTTCATGATTCCTTTGCAAATTTTTTCCATTAGGGTTTCGATGTAAATTGGGATTAT CTGTAATTTGATCCGAGATTGTTGTTTATAAAACTCATGTATTGATATTTCTTTTCAGTTAGATAGATTCATACCGAACC GATCCGCGATGGATTTCGATTATGCCCACTACATGCTCACAGAGGGAGCTAAAGGTAAGGAAGACACAGCTGTGAGCTCA CCCTCCAGAGATGCATACAGGAAGCTGCTTGCAGAGAGCTTAAACATGAACAGGACTAGGATTCTTGCTTTCAAGAACAA GCCACCTGAGTCAGTTGACTTGATCTCTCATGAGATTTCCTCAGCTCTTCCTCAAGATAATAAAGCCGTCAAGCCCAGGC GACACATTCCTCAGGTGGGTGCTCTACTAATTTCTGATTATGATTGAGTGGATTTGAATGGTAAATGTCAATATTTTGCG AATTTGTGCTAATTTATTTTCTGGTTATCATTCAGTCTTCTGAGAGAACATTGGATGCTCCGGATCTCATGGATGACTAT TACCTCAATTTACTTGACTGGGGAAGTGGCAATGTTCTTGCAATTGCACTAGGAAGCACAGTGTACTTATGGGATGCAAC AAATGGTTCCACTTCAGAACTTGTTACAGTTGATGATGAAGTTGGCCCTGTCACATCAGTTAACTGGGGTCCTGATGGAA GACATATTGCTATTGGTTTGAACAATTCTGAGGTGCAACTATGGGATACTGGTTCATATAGACAGGTATTTTATCTTTGT CATCAAAAAATACTTTGTTAATTTCTCTCTATCCATTTCCTGCAATTTATACTAATGTTGTTCTTCTTGGTTCTGCAGTT GAGAACTTTGAAAGGTGGACATAGGCAGAGAGTGGGGTCTTTGGCTTGGAACAATCACATACTCACAACAGGAGGGATGG ATGGTAGAATTGTGAACAATGATGTGAGAATCAGATCACACATTGTTGAAACCTACAGAGGGCATGAGCAAGAGGTTTGC GGGCTGAAATGGTCAGCTTCAGGCCAACAATTAGCCAGTGGAGGGAATGATAATCTACTTTATATCTGGGACAGATCCAC AGTATCTTCTAATTCAACAACAAAATGGCTTCACAGGCTTGAAGATCACACATCTGCAGTGAAGGCACTTGCCTGGTGTC CCTTCCAAGGGAATTTGCTAGCTTCCGGTGGAGGCACTGGAGATCGTTGCATCAAGTTTTGGAACACACACACCGGCGCT TGCTTGAACTCTGTGGACACCGGGTCTCAAGTTTGCTCCTTGCTGTGGAACAAGAACGAGAGGGAGTTGCTCAGCTCTCA TGGTTTCTCCCTGAATCAGCTTACACTTTGGAAATATCCTTCAATGGTCAAGATGGCAGAGCTCACTGGTCACACTTCCA GAGTTCTTTACATGGCACAGGTATTTTAATTTTACTTTTTTCCTGTTTTCCTCAAGCAAAACTTGTTTCATTTTGAGCAC GTTACTGATTAGTGTGCTATGAACTTTCTTCAGAGCCCAGATGGTTGCACAGTAGCATCAGCAGCGGCTGATGAAACATT GAGGTTTTGGAATGTGTTTGGAGCTCCTGAGGCAGCTAAAGCTGCACCAAAAGCAAGAGCTGAGCCATTTGCACATGTGA ACAGAATTCGATAGGCGGCAACCATGTTATTTTTTTCTGGTTGAAGAATGCCTCCGCAATCACTGGCATCAATATGTAGA TGTAAATTACAAAACAATAAGGGGTCAGTGCCTAGTGATGCAGTAGAGGGAAAAGTTCATGTGAGCTTTGGGGGACCTTA AATGTACATATTGTAACATATTGACAATGGAAAACAGAACCTCCTTTATTCCGTGGACGTAGTCACACACTGTGGCGAAC CACGTATATCGTTTGTGTCTTCTTGCATTATATCTTTTTTTTTTGTGGTGTTTTAGTTGTGCTATGATTGTGAACTAACT AATAATCTCACTGTCAAAGATCCATCATCACTTAGAATTTATAATCAATCAGTAATGAAGGAAGACGCTCGTTTTTAGTT GCCTTAGCCGAAAC
CDS sequence (LotjaGi2g1v0447700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGCAGGATCTATGAGTTCTTCTGCTAACATCAAAACCCGATCACGCTTCCCTCTTCAGGAACAATTTCTCCAGAG AAAGAGTTCCCGGGAAAATTTAGATAGATTCATACCGAACCGATCCGCGATGGATTTCGATTATGCCCACTACATGCTCA CAGAGGGAGCTAAAGGTAAGGAAGACACAGCTGTGAGCTCACCCTCCAGAGATGCATACAGGAAGCTGCTTGCAGAGAGC TTAAACATGAACAGGACTAGGATTCTTGCTTTCAAGAACAAGCCACCTGAGTCAGTTGACTTGATCTCTCATGAGATTTC CTCAGCTCTTCCTCAAGATAATAAAGCCGTCAAGCCCAGGCGACACATTCCTCAGTCTTCTGAGAGAACATTGGATGCTC CGGATCTCATGGATGACTATTACCTCAATTTACTTGACTGGGGAAGTGGCAATGTTCTTGCAATTGCACTAGGAAGCACA GTGTACTTATGGGATGCAACAAATGGTTCCACTTCAGAACTTGTTACAGTTGATGATGAAGTTGGCCCTGTCACATCAGT TAACTGGGGTCCTGATGGAAGACATATTGCTATTGGTTTGAACAATTCTGAGGTGCAACTATGGGATACTGGTTCATATA GACAGTTGAGAACTTTGAAAGGTGGACATAGGCAGAGAGTGGGGTCTTTGGCTTGGAACAATCACATACTCACAACAGGA GGGATGGATGGTAGAATTGTGAACAATGATGTGAGAATCAGATCACACATTGTTGAAACCTACAGAGGGCATGAGCAAGA GGTTTGCGGGCTGAAATGGTCAGCTTCAGGCCAACAATTAGCCAGTGGAGGGAATGATAATCTACTTTATATCTGGGACA GATCCACAGTATCTTCTAATTCAACAACAAAATGGCTTCACAGGCTTGAAGATCACACATCTGCAGTGAAGGCACTTGCC TGGTGTCCCTTCCAAGGGAATTTGCTAGCTTCCGGTGGAGGCACTGGAGATCGTTGCATCAAGTTTTGGAACACACACAC CGGCGCTTGCTTGAACTCTGTGGACACCGGGTCTCAAGTTTGCTCCTTGCTGTGGAACAAGAACGAGAGGGAGTTGCTCA GCTCTCATGGTTTCTCCCTGAATCAGCTTACACTTTGGAAATATCCTTCAATGGTCAAGATGGCAGAGCTCACTGGTCAC ACTTCCAGAGTTCTTTACATGGCACAGAGCCCAGATGGTTGCACAGTAGCATCAGCAGCGGCTGATGAAACATTGAGGTT TTGGAATGTGTTTGGAGCTCCTGAGGCAGCTAAAGCTGCACCAAAAGCAAGAGCTGAGCCATTTGCACATGTGAACAGAA TTCGATAG
Protein sequence (LotjaGi2g1v0447700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAGSMSSSANIKTRSRFPLQEQFLQRKSSRENLDRFIPNRSAMDFDYAHYMLTEGAKGKEDTAVSSPSRDAYRKLLAES LNMNRTRILAFKNKPPESVDLISHEISSALPQDNKAVKPRRHIPQSSERTLDAPDLMDDYYLNLLDWGSGNVLAIALGST VYLWDATNGSTSELVTVDDEVGPVTSVNWGPDGRHIAIGLNNSEVQLWDTGSYRQLRTLKGGHRQRVGSLAWNNHILTTG GMDGRIVNNDVRIRSHIVETYRGHEQEVCGLKWSASGQQLASGGNDNLLYIWDRSTVSSNSTTKWLHRLEDHTSAVKALA WCPFQGNLLASGGGTGDRCIKFWNTHTGACLNSVDTGSQVCSLLWNKNERELLSSHGFSLNQLTLWKYPSMVKMAELTGH TSRVLYMAQSPDGCTVASAAADETLRFWNVFGAPEAAKAAPKARAEPFAHVNRIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 445 | 437 | 3.3E-261 | – | |
| PANTHER | 9 | 445 | 437 | 3.3E-261 | ||
| Gene3D | 84 | 432 | 349 | 1.3E-123 | ||
| SUPERFAMILY | 140 | 429 | 290 | 1.65E-58 | ||
| ProSiteProfiles | 159 | 438 | 280 | 31.797 | ||
| CDD | 160 | 429 | 270 | 2.58934E-41 | – | |
| SMART | 170 | 209 | 40 | 0.012 | ||
| ProSiteProfiles | 177 | 218 | 42 | 10.809 | ||
| Pfam | 178 | 234 | 57 | 3.8E-5 | ||
| ProSitePatterns | 196 | 210 | 15 | - | ||
| SMART | 212 | 250 | 39 | 1.1 | ||
| SMART | 254 | 293 | 40 | 1.9E-8 | ||
| Pfam | 258 | 293 | 36 | 1.3E-6 | ||
| ProSiteProfiles | 261 | 302 | 42 | 14.318 | ||
| SMART | 302 | 344 | 43 | 6.1E-5 | ||
| Pfam | 306 | 344 | 39 | 0.01 | ||
| ProSitePatterns | 331 | 345 | 15 | - | ||
| SMART | 390 | 429 | 40 | 6.5E-6 | ||
| Pfam | 394 | 429 | 36 | 0.0011 | ||
| ProSiteProfiles | 397 | 430 | 34 | 12.781 | ||
| ProSitePatterns | 416 | 430 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Anaphase-promoting complex binding | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. | ||
| Molecular function | Ubiquitin-protein transferase activator activity | Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. | ||
| Biological process | Positive regulation of ubiquitin protein ligase activity | Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi2g1v0447700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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