Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0005200 |
| Transcript ID | LotjaGi3g1v0005200.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plasma membrane ATPase; TAIR: AT1G80660.1 H -ATPase 9; Swiss-Prot: sp|Q7XPY2|PMA1_ORYSJ Plasma membrane ATPase; TrEMBL-Plants: tr|I1M5Y0|I1M5Y0_SOYBN Plasma membrane ATPase; Found in the gene: LotjaGi3g1v0005200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:640881..645661) extracted from Lotus japonicus Gifu genome v1.2.
AAGGTAAAATCATCATCTTATGGATTCATTCATAAATAATCACTTGTTATACATATGTTATATATTATAGCATTTTTGTA TCAGCGTCTTTTTGAATTGATTTTGACTTTAAAACCATGCGCGGATTTTTTACTATTGATTTTGAAGCCGCCATGATCGA TTTATTTGTGACCGGCTTCTAGGTTTTAAATTGATGATGAGAAAAAAAGGTGGTTTTAGACTTTATAGGCTGTTAGTTCC AATTATGTAGCGTTGAGGATTTGATTTTCACTAACATTTTTTAATGTTTGTTAACAGGAAAGCAAGGTGCTCAAATTCTT GGGTTTCATGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCTGCTATCATGGCTATTGCATTGGCGAATGGAGGGGTAC GTTCTGTTCTGCATGGCATTATTGGCATATATTTGCTGATTATGGACAACACTAAATATTTTGCTCACCTAGTTTTTGTC ATTCTCTTGTCTAATTCTCCATCTTTTGAAACATGCAGGGTGAGCCACCGGATTGGCAAGACTTTGTGGGAATTATGGTG TTGCTAGTTGTCAACTCAACAATCAGTTTCATAGAAGAAAACAATGCAGGCAATGCTGCAGCAGCCCTTATGGCTGGTCT TGCGCCCAAAACCAAGGTATAATAATCTAACTAGTGTGTGTTTAAATACCAATTGAGTGCACTTTGAACAGATTATATCC CAATTCAAAAGAACTTCACATTTTGTCTTAAAGTGAGTGCTGCAGCTAACATTTGTTTGCTGATAGATATCCAAAATAGC CATAGTAGTCATCAAAGTCTTATCTATGTGTTGTTATTTGTTAGCTAGCTTCTAGTATTTGGATGGTAATGCAGCTTCAC TGTAATGTGTATAGTATAGTACTTAATGTTTTAACATGCATATGTTCTGTTTGAACAATTGACAGGTTCTGAGAGATGGA AGGTGGACTGAGCAGGAGGCTGCTATATTGGTACCTGGAGATATAATCAGTATGAAATTAGGAGATATCGTTCCAGCTGA TGCTCGTCTTTTAGAAGGAGATCCCCTCAAGATTGATCAATCTGCACTCACGGGTGAGTCCTTGCCTGTTACTAAGAACT CTGGTGATGAAGTCTTCTCTGGTTCCACAGTAAAACAAGGAGAAATTGAGGCTGTTGTGATAGCTACTGGGGTGCACACC TTCTTTGGTAAAGCTGCACACTTGGTAGATAGCACTAACCAAGTTGGCCATTTCCAAAAGGTACTACTATTATCAGCTAT CTCTTTGTTCTTTGAGTTACATACTATTTGTCTCTTCACTAATGTGCATTTTGATGGTTATGATCAGGTGCTGACAGCTA TTGGTAACTTCTGCATTTGCTCAATTGCTGTGGGAATGATCATAGAGCTTGTTGTCATGTACCCAATCCAGCACCGCAAG TATAGGAGTGGAATCAACAATCTCTTGGTGCTCCTCATTGGTGGGATTCCTATTGCCATGCCAACAGTCTTGTCAGTAAC AATGGCTATTGGTTCCCACAGGCTGTCCCAGCAAGGTGCAATCACAAAGAGAATGACAGCCATTGAGGAGATGGCTGGGA TGGATGTGTTGTGCAGTGACAAGACTGGCACTCTTACACTGAACAAGCTTACTGTGGACAAGAATTTGGTAGAGGTAAGG GGATCCAAGACAGACAATTCATTAAAAGTTTACTTGTGTTGGAACATCAATTTAATGTCATTTGTTTTTCAGATTTACTA ATCATGGAACCAATTTCTCCACATTGCAGGTTTTTTGCAAAGATGCTGACAAGGACACAGTAATTCTGCTTGGAGCTAGG GCCTCTAGGGTTGAGAACCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGAGATCCAAAAGAGGTTTGTAATTT CTTCCACATGATTTCTTGTCCTGGTGGTTTCCTACACGAATAAGCCAGATTCTACATGCTTGAAATCTTTGAACAAAGAA AAAAAAATTCACATTAATAAAGTTCTCTTGCTAGCCTAGTGAATGACTCTTGGGGTAACCTTGTAAAATATGCTAAGGTG CTTCTTTAGACATGCATATGAAACTTTTGATTACCATGACCATAGGTGATTCACTGATTTGATAAGATTATAACTATAAT GACACACTTTTCATGCTTACTACAGGCTAGAGAAGGTATTGAAGAGGTGCATTTCTTACCCTTCAATCCAGTGGACAAGC GTACAGCCATAACATACATAGACCATCTGGGAGATTGGCACCGAGTGAGCAAAGGGGCACCAGAGCAGGTAAATCGATCT TTCAATGCACTACACATAATTGATGTCTCCTGTTTCCTTTAACAATGTAACTCATATTGAATTTCTTGCTAGATTATCGA ACTCTGCAAGGTTAGAGAAGATGTGAAGAACAAAGCCCTTTCCATTATTGATAAGTTTGCTGATCGCGGTCTTCGTTCGC TTGCTGTTGCCAAACAAGTGAGTTATGGTCCTTAGTAGTAGTACATGCCTACCCCCCAACAAATAATTGCTCATACATGG TTTGAATAAGTTTTGTGACAAACTATACATGCTTTCAGGAAGTGCCAGAAAAGAGCAAGGAGAGTCCAGGAGCACCATGG GTGTTTGTGGGTCTTTTGCCTCTCTTTGACCCACCTAGGCATGACAGTGCAGAAACCATCCAACGCGCTCTTCACCTAGG AGTGAATGTCAAGATGATTACTGGTGATCAACTAGCTATCGGCAAGGAAACTGGTCGCAGGCTTGGCATGGGAAGTAACA TGTACCCTTCATCCTCCCTCCTTGGTGAGCACAAGGATGCGTCTATTGCTGCTCTTCCAATTGATGAGCTTATTGAGAAG GCTGATGGCTTTGCTGGTGTTTTCCCTGGTAAATTACTACTTTCTTACAAACTTGTACTTGAAAATCAATTTTTTTTACT AGAATTATGAAGGCAACAATCATCGAACTCTAGACCACTTAGTCATAGATGCTATGATATTATGTCATGAACTAACTATC CAAAAAGTTTAAGTAATTAGTTGATCACACATGGATGATTTTATATTTTATTTCTAACATTCTTCACCTTACTAATTGAT GTGAGTCTGAATCTTGTCCTTTTGTCCAATCCAGAACATAAATATGAGATTGTTAAGAGGCTTCAGGACAGGAAGCACAT ATGTGGGATGACTGGGGATGGTGTCAACGATGCTCCAGCCTTGAAAAGAGCAGATATTGGAATTGCAGTGGCTGATGCAA CCGATGCAGCGCGAGGTGCATCTGATATAGTCCTCACGGAGCCTGGTTTGAGTGTCATTGTGAGCGCAGTGTTGACAAGC AGAGCCATCTTTCAGAGAATGAAGAACTACACCATATATGCTGTTTCCATAACAATCCGAATCGTGCTAGGCTTTATGCT CCTTGCACTCATCTGGAAGTTTGATTTCTCACCTTTTATGGTTCTGATCATTGCCATACTAAATGACGGGACGATCATGA CAATTTCCAAGGATAGGGTGAAGCCATCTCCTCTTCCGGATTCATGGAAGCTGAATGAGATCTTTGCCACCGGCATAGTG CTTGGTGCCTACCTTGCTGTTATGACTGTTGTCTTCTTCTGGCTTGCTCATGCATCTAATTTCTTCTCAGTAAGATGGAG ATTTCAAAATCATATATCGGTTGGAACATGATTTCAGACATAACTCACATGCTAAAATGTTGTTTGCAGGACAAATTTGG AGTGAGATCAATCAGGGATAGCCACAATGAGCTCACAGCAGCTATTTACCTTCAAGTGAGTACTGTAAGTCAGGCTCTCA TCTTTGTCACACGTTCAAGGAGTTGGTCTTATGTTGAACGTCCGGGCGCCCTTCTCATGGTCGCCTTTCTGGCAGCACAA CTGGTGAGTTATGATGACATGAATAGGCAAATGTTAGTTGTTAATAATGTTAGTCAATTAATCACTCATCAGGGTTCGAA CCCTGGACCCTTCACCCTTATCCCACTTTCTGATTTAGTCTTGTGTGTCAAACAAATTACTTATAGTTTGTATTTCTTTT CATGAATAACTTGTTAGGTTGCCACACTCATTGCTGTGTATGCAAACTGGGGCTTTGCTGATATGAAAGGAATTGGATGG GGTTGGGCTGGTGTCATTTGGCTCTACAGCATTGTTTTCTACATCCCCTTGGACATCCTTAAATTCATCATAAGATATGC ATTGAGTGGAAAAGCATGGAGTAACATTACTGAGAACAGGGTAAAATCTCAATCTCAAAATTCTAAATATCACACTGTTA GTGTTATCTACTAAACAGAACCATATGGATGCAAAATATGTGACCATTTTATTTTCTGTGCTGTGATGCAGGTTGCTTTC ACCTCAAAGAAGGATTATGGAAAGGGAGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACACTGCATGGTCTCAACCC TCCTGAAACTGAGACTATGATGAATGAGAAGAACAACTATAGGGAACTTTCTGAACTTGCAGAACAGGCCAAGAAACGTG CTGAAGTTGCAAGGTATTGTCCGTCCAGAATTTGAGCCGAGCGGAACCACAATGTTCATTGAAATGCTTACTAATTTAAA GGTAAATCCAATCCAATGTGCCTCATTTGGTTTACACTTTGCAGGTTGAGGGAGCTTCACACGCTTAAGGGGCACGTTGA GTCTGTTGTGAAGCTCAAGGGGCTTGACATTGAGACAATTCAGCAGCACTACACTGTTTGA
CDS sequence (LotjaGi3g1v0005200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCTGCTATCATGGCTATTGCATTGGCGAATGGAGGGGGTGAGCCACC GGATTGGCAAGACTTTGTGGGAATTATGGTGTTGCTAGTTGTCAACTCAACAATCAGTTTCATAGAAGAAAACAATGCAG GCAATGCTGCAGCAGCCCTTATGGCTGGTCTTGCGCCCAAAACCAAGGTTCTGAGAGATGGAAGGTGGACTGAGCAGGAG GCTGCTATATTGGTACCTGGAGATATAATCAGTATGAAATTAGGAGATATCGTTCCAGCTGATGCTCGTCTTTTAGAAGG AGATCCCCTCAAGATTGATCAATCTGCACTCACGGGTGAGTCCTTGCCTGTTACTAAGAACTCTGGTGATGAAGTCTTCT CTGGTTCCACAGTAAAACAAGGAGAAATTGAGGCTGTTGTGATAGCTACTGGGGTGCACACCTTCTTTGGTAAAGCTGCA CACTTGGTAGATAGCACTAACCAAGTTGGCCATTTCCAAAAGGTGCTGACAGCTATTGGTAACTTCTGCATTTGCTCAAT TGCTGTGGGAATGATCATAGAGCTTGTTGTCATGTACCCAATCCAGCACCGCAAGTATAGGAGTGGAATCAACAATCTCT TGGTGCTCCTCATTGGTGGGATTCCTATTGCCATGCCAACAGTCTTGTCAGTAACAATGGCTATTGGTTCCCACAGGCTG TCCCAGCAAGGTGCAATCACAAAGAGAATGACAGCCATTGAGGAGATGGCTGGGATGGATGTGTTGTGCAGTGACAAGAC TGGCACTCTTACACTGAACAAGCTTACTGTGGACAAGAATTTGGTAGAGGTTTTTTGCAAAGATGCTGACAAGGACACAG TAATTCTGCTTGGAGCTAGGGCCTCTAGGGTTGAGAACCAAGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGAGAT CCAAAAGAGGCTAGAGAAGGTATTGAAGAGGTGCATTTCTTACCCTTCAATCCAGTGGACAAGCGTACAGCCATAACATA CATAGACCATCTGGGAGATTGGCACCGAGTGAGCAAAGGGGCACCAGAGCAGATTATCGAACTCTGCAAGGTTAGAGAAG ATGTGAAGAACAAAGCCCTTTCCATTATTGATAAGTTTGCTGATCGCGGTCTTCGTTCGCTTGCTGTTGCCAAACAAGAA GTGCCAGAAAAGAGCAAGGAGAGTCCAGGAGCACCATGGGTGTTTGTGGGTCTTTTGCCTCTCTTTGACCCACCTAGGCA TGACAGTGCAGAAACCATCCAACGCGCTCTTCACCTAGGAGTGAATGTCAAGATGATTACTGGTGATCAACTAGCTATCG GCAAGGAAACTGGTCGCAGGCTTGGCATGGGAAGTAACATGTACCCTTCATCCTCCCTCCTTGGTGAGCACAAGGATGCG TCTATTGCTGCTCTTCCAATTGATGAGCTTATTGAGAAGGCTGATGGCTTTGCTGGTGTTTTCCCTGAACATAAATATGA GATTGTTAAGAGGCTTCAGGACAGGAAGCACATATGTGGGATGACTGGGGATGGTGTCAACGATGCTCCAGCCTTGAAAA GAGCAGATATTGGAATTGCAGTGGCTGATGCAACCGATGCAGCGCGAGGTGCATCTGATATAGTCCTCACGGAGCCTGGT TTGAGTGTCATTGTGAGCGCAGTGTTGACAAGCAGAGCCATCTTTCAGAGAATGAAGAACTACACCATATATGCTGTTTC CATAACAATCCGAATCGTGCTAGGCTTTATGCTCCTTGCACTCATCTGGAAGTTTGATTTCTCACCTTTTATGGTTCTGA TCATTGCCATACTAAATGACGGGACGATCATGACAATTTCCAAGGATAGGGTGAAGCCATCTCCTCTTCCGGATTCATGG AAGCTGAATGAGATCTTTGCCACCGGCATAGTGCTTGGTGCCTACCTTGCTGTTATGACTGTTGTCTTCTTCTGGCTTGC TCATGCATCTAATTTCTTCTCAGACAAATTTGGAGTGAGATCAATCAGGGATAGCCACAATGAGCTCACAGCAGCTATTT ACCTTCAAGTGAGTACTGTAAGTCAGGCTCTCATCTTTGTCACACGTTCAAGGAGTTGGTCTTATGTTGAACGTCCGGGC GCCCTTCTCATGGTCGCCTTTCTGGCAGCACAACTGGTTGCCACACTCATTGCTGTGTATGCAAACTGGGGCTTTGCTGA TATGAAAGGAATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTGTTTTCTACATCCCCTTGGACATCCTTA AATTCATCATAAGATATGCATTGAGTGGAAAAGCATGGAGTAACATTACTGAGAACAGGGTTGCTTTCACCTCAAAGAAG GATTATGGAAAGGGAGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACACTGCATGGTCTCAACCCTCCTGAAACTGA GACTATGATGAATGAGAAGAACAACTATAGGGAACTTTCTGAACTTGCAGAACAGGCCAAGAAACGTGCTGAAGTTGCAA GGTTGAGGGAGCTTCACACGCTTAAGGGGCACGTTGAGTCTGTTGTGAAGCTCAAGGGGCTTGACATTGAGACAATTCAG CAGCACTACACTGTTTGA
Protein sequence (LotjaGi3g1v0005200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWNPLSWVMEAAAIMAIALANGGGEPPDWQDFVGIMVLLVVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQE AAILVPGDIISMKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNSGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAA HLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIELVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRL SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFCKDADKDTVILLGARASRVENQDAIDACIVGMLGD PKEAREGIEEVHFLPFNPVDKRTAITYIDHLGDWHRVSKGAPEQIIELCKVREDVKNKALSIIDKFADRGLRSLAVAKQE VPEKSKESPGAPWVFVGLLPLFDPPRHDSAETIQRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDA SIAALPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPG LSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSW KLNEIFATGIVLGAYLAVMTVVFFWLAHASNFFSDKFGVRSIRDSHNELTAAIYLQVSTVSQALIFVTRSRSWSYVERPG ALLMVAFLAAQLVATLIAVYANWGFADMKGIGWGWAGVIWLYSIVFYIPLDILKFIIRYALSGKAWSNITENRVAFTSKK DYGKGEREAQWAAAQRTLHGLNPPETETMMNEKNNYRELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQ QHYTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 861 | 861 | 0.0 | – | |
| Gene3D | 1 | 92 | 92 | 8.2E-30 | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| CDD | 1 | 775 | 775 | 0.0 | ||
| PANTHER | 1 | 861 | 861 | 0.0 | – | |
| TIGRFAM | 1 | 740 | 740 | 0.0 | ||
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| SUPERFAMILY | 1 | 781 | 781 | 2.22E-73 | ||
| Phobius | 11 | 18 | 8 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 31 | 9 | - | – | |
| Phobius | 32 | 48 | 17 | - | – | |
| TIGRFAM | 35 | 292 | 258 | 4.4E-39 | ||
| Phobius | 49 | 174 | 126 | - | – | |
| Pfam | 65 | 242 | 178 | 7.2E-49 | – | |
| SUPERFAMILY | 66 | 163 | 98 | 1.05E-28 | ||
| PRINTS | 113 | 127 | 15 | 3.7E-42 | – | |
| Gene3D | 114 | 276 | 163 | 2.5E-16 | – | |
| Phobius | 175 | 201 | 27 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 202 | 212 | 11 | - | – | |
| Phobius | 213 | 235 | 23 | - | – | |
| TMHMM | 213 | 235 | 23 | - | – | |
| Phobius | 236 | 580 | 345 | - | – | |
| SFLD | 245 | 574 | 330 | 0.0 | – | |
| SFLD | 245 | 574 | 330 | 0.0 | – | |
| Pfam | 259 | 536 | 278 | 2.1E-15 | – | |
| SUPERFAMILY | 259 | 569 | 311 | 3.05E-37 | ||
| PRINTS | 263 | 277 | 15 | 3.7E-42 | – | |
| ProSitePatterns | 265 | 271 | 7 | - | ||
| Gene3D | 277 | 422 | 146 | 1.9E-44 | ||
| PRINTS | 379 | 397 | 19 | 3.1E-57 | ||
| PRINTS | 417 | 428 | 12 | 3.7E-42 | – | |
| PRINTS | 439 | 449 | 11 | 3.7E-42 | – | |
| Gene3D | 477 | 780 | 304 | 3.3E-112 | – | |
| PRINTS | 494 | 510 | 17 | 3.1E-57 | ||
| TIGRFAM | 497 | 607 | 111 | 1.1E-27 | ||
| PRINTS | 522 | 538 | 17 | 3.1E-57 | ||
| PRINTS | 522 | 541 | 20 | 3.7E-42 | – | |
| PRINTS | 545 | 557 | 13 | 3.7E-42 | – | |
| PRINTS | 553 | 578 | 26 | 3.1E-57 | ||
| TMHMM | 581 | 603 | 23 | - | – | |
| Phobius | 581 | 603 | 23 | - | – | |
| Phobius | 604 | 608 | 5 | - | – | |
| Phobius | 609 | 626 | 18 | - | – | |
| TMHMM | 610 | 627 | 18 | - | – | |
| Phobius | 627 | 645 | 19 | - | – | |
| TMHMM | 645 | 667 | 23 | - | – | |
| Phobius | 646 | 669 | 24 | - | – | |
| Phobius | 670 | 688 | 19 | - | – | |
| Phobius | 689 | 708 | 20 | - | – | |
| PRINTS | 694 | 715 | 22 | 3.1E-57 | ||
| Phobius | 709 | 719 | 11 | - | – | |
| TMHMM | 719 | 741 | 23 | - | – | |
| Phobius | 720 | 741 | 22 | - | – | |
| Phobius | 742 | 752 | 11 | - | – | |
| TMHMM | 751 | 770 | 20 | - | – | |
| Phobius | 753 | 777 | 25 | - | – | |
| Phobius | 778 | 885 | 108 | - | – | |
| Coils | 829 | 856 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Proton-exporting ATPase activity, phosphorylative mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Proton export across plasma membrane | The directed movement of hydrogen ions (protons) from inside a cell, across the plasma membrane and into the extracellular region. |
Expression pattern of LotjaGi3g1v0005200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…