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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0008400 |
| Transcript ID | LotjaGi3g1v0008400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family protein, putative; TAIR: AT1G80080.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q9SSD1|TMM_ARATH Protein TOO MANY MOUTHS; TrEMBL-Plants: tr|A0A0R0GYX9|A0A0R0GYX9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0008400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:961178..962740) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAATGAATTGCAATTGGTGTGGTCTTCATCTTCTAGTTGTTGTAGTAACATGCTGTACGTTCTTTTTGCCCCATTTA GTGGTGCCTTACACTGTCGTGATGTCTGATTCCGGCGTGCCATCCGCCCTTGTAGACGGGCCGCAAACCGGGTTTTCCAC GAAGCAAGATGGAGCTAGAACTGAGGCGCGGGAGCAGGAAGCGGTGTACGACATCATGAGAGCCACCGGGAATGATTGGG CCACTGAAATCCCCGACGTGTGCCGCGGACGGTGGCACGGCATTGAGTGCATGCCCGATAAGGATAATGTGTATCACGTT GTCTCACTCTCCTTCGGCGCCCTCTCCGACGACACAGCTTTCCCGACATGCGACCCGACCCGGTCCACTATCTCTCCCTC CGTCACCAACCTCCCTCATCTCAAGACATTGTTCTTTTACCGTTGTTTCAATTACAACCCGCACCCGATTCCTTCCTTCT TAGGTCGACTCGGCCAAACCTTGCAAACTCTAGTCCTAAGAGAAAACGGCCACGTCGGCCCAATTCCTCATGAGTTGGGA AACCTCACACGTCTCATCGTACTTGATCTTCACAGCAACGACCTCAACGGTTCAATACCGGTCTCGCTGGGCCGGATTAC TAGTTTGAAGTCCTTGGATTTGAGCAGCAACAAGCTAACCAGTTCAATTCCCAGTTTAACGTTCCCCAACTTGAACATAC TGGACCTGAGCCAGAACCTTCTAACGGGTTCAATTCCTATGTCGCTTTGGGACTGTCACTCTCTAATCAAATTGGATCTA AGTCGTAACCGTCTCGTGGGCCTTATTGCTGAGAAACTCACGGGCCTAAAAGAGCTTATTCTTATGGATCTAAGCTACAA CCGTATCAAGGGCCCGTTTCCGCCCTCGATGAGGAGCCTGGGCTCTCTTCAGGCCTTGATCCTCAAGGGAAACCCAATGG GCTCCACGGGTATACCAGATGATGGGTTTGATGGCATGACGAGCTTGATGATATTGATCATGTCCCACATGAATTTACAT GGGCCGGTCCCGGAATCACTAGGGAAATTACCCAACCTTAGAGTGCTCCATCTTGATGAAAACCATCTCAATGGGTCAAT CCCCAAGAGTTTCAGAGATTTGAGAAGCCTGAGTGAACTGAGGCTGAATGATAATAAGCTAACTGGGCCTGTTCCATTTG ATAGAGAAGTGGTTTGGAGGATGAAATGGAAGCTGAGACTGCATAACAATTCAGGCCTTTGTTACGATGCAAAGAGTGGT TTTGGGGATGATTTGGGCTCCACTCTTGATTCTGGGATCAGTTTATGTGGGCCTTCAGGCCCAAGTTCGGATAGGACCGT GCAACATCTTTCGACCACGGAAAAGCCCGTGTCAACAACAACAAAGAATGTCTCGTCGGATGCTGCTACAAGATCATGGG GACTAGCTACTTTTGTACTAATGTCTACTGTAATTTTGTTGTAAGTAAAGTATTAATAGGGAAAACAATCAATGGAAACA AGTTACATATAATGTGTCATAAATAAGATTCCAGTGTTCATTT
CDS sequence (LotjaGi3g1v0008400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTGCAATTGGTGTGGTCTTCATCTTCTAGTTGTTGTAGTAACATGCTGTACGTTCTTTTTGCCCCATTTAGTGGT GCCTTACACTGTCGTGATGTCTGATTCCGGCGTGCCATCCGCCCTTGTAGACGGGCCGCAAACCGGGTTTTCCACGAAGC AAGATGGAGCTAGAACTGAGGCGCGGGAGCAGGAAGCGGTGTACGACATCATGAGAGCCACCGGGAATGATTGGGCCACT GAAATCCCCGACGTGTGCCGCGGACGGTGGCACGGCATTGAGTGCATGCCCGATAAGGATAATGTGTATCACGTTGTCTC ACTCTCCTTCGGCGCCCTCTCCGACGACACAGCTTTCCCGACATGCGACCCGACCCGGTCCACTATCTCTCCCTCCGTCA CCAACCTCCCTCATCTCAAGACATTGTTCTTTTACCGTTGTTTCAATTACAACCCGCACCCGATTCCTTCCTTCTTAGGT CGACTCGGCCAAACCTTGCAAACTCTAGTCCTAAGAGAAAACGGCCACGTCGGCCCAATTCCTCATGAGTTGGGAAACCT CACACGTCTCATCGTACTTGATCTTCACAGCAACGACCTCAACGGTTCAATACCGGTCTCGCTGGGCCGGATTACTAGTT TGAAGTCCTTGGATTTGAGCAGCAACAAGCTAACCAGTTCAATTCCCAGTTTAACGTTCCCCAACTTGAACATACTGGAC CTGAGCCAGAACCTTCTAACGGGTTCAATTCCTATGTCGCTTTGGGACTGTCACTCTCTAATCAAATTGGATCTAAGTCG TAACCGTCTCGTGGGCCTTATTGCTGAGAAACTCACGGGCCTAAAAGAGCTTATTCTTATGGATCTAAGCTACAACCGTA TCAAGGGCCCGTTTCCGCCCTCGATGAGGAGCCTGGGCTCTCTTCAGGCCTTGATCCTCAAGGGAAACCCAATGGGCTCC ACGGGTATACCAGATGATGGGTTTGATGGCATGACGAGCTTGATGATATTGATCATGTCCCACATGAATTTACATGGGCC GGTCCCGGAATCACTAGGGAAATTACCCAACCTTAGAGTGCTCCATCTTGATGAAAACCATCTCAATGGGTCAATCCCCA AGAGTTTCAGAGATTTGAGAAGCCTGAGTGAACTGAGGCTGAATGATAATAAGCTAACTGGGCCTGTTCCATTTGATAGA GAAGTGGTTTGGAGGATGAAATGGAAGCTGAGACTGCATAACAATTCAGGCCTTTGTTACGATGCAAAGAGTGGTTTTGG GGATGATTTGGGCTCCACTCTTGATTCTGGGATCAGTTTATGTGGGCCTTCAGGCCCAAGTTCGGATAGGACCGTGCAAC ATCTTTCGACCACGGAAAAGCCCGTGTCAACAACAACAAAGAATGTCTCGTCGGATGCTGCTACAAGATCATGGGGACTA GCTACTTTTGTACTAATGTCTACTGTAATTTTGTTGTAA
Protein sequence (LotjaGi3g1v0008400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNCNWCGLHLLVVVVTCCTFFLPHLVVPYTVVMSDSGVPSALVDGPQTGFSTKQDGARTEAREQEAVYDIMRATGNDWAT EIPDVCRGRWHGIECMPDKDNVYHVVSLSFGALSDDTAFPTCDPTRSTISPSVTNLPHLKTLFFYRCFNYNPHPIPSFLG RLGQTLQTLVLRENGHVGPIPHELGNLTRLIVLDLHSNDLNGSIPVSLGRITSLKSLDLSSNKLTSSIPSLTFPNLNILD LSQNLLTGSIPMSLWDCHSLIKLDLSRNRLVGLIAEKLTGLKELILMDLSYNRIKGPFPPSMRSLGSLQALILKGNPMGS TGIPDDGFDGMTSLMILIMSHMNLHGPVPESLGKLPNLRVLHLDENHLNGSIPKSFRDLRSLSELRLNDNKLTGPVPFDR EVVWRMKWKLRLHNNSGLCYDAKSGFGDDLGSTLDSGISLCGPSGPSSDRTVQHLSTTEKPVSTTTKNVSSDAATRSWGL ATFVLMSTVILL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 10 | 22 | 13 | - | – | |
| Phobius | 23 | 28 | 6 | - | – | |
| Phobius | 29 | 492 | 464 | - | – | |
| PANTHER | 47 | 473 | 427 | 1.0E-168 | – | |
| PANTHER | 47 | 473 | 427 | 1.0E-168 | – | |
| Gene3D | 62 | 231 | 170 | 5.5E-31 | ||
| SUPERFAMILY | 81 | 420 | 340 | 1.68E-53 | – | |
| Pfam | 165 | 224 | 60 | 1.1E-6 | ||
| SMART | 187 | 211 | 25 | 87.0 | ||
| ProSiteProfiles | 189 | 211 | 23 | 4.994 | ||
| SMART | 212 | 235 | 24 | 20.0 | ||
| ProSiteProfiles | 213 | 235 | 23 | 7.974 | ||
| PRINTS | 214 | 227 | 14 | 2.7E-5 | – | |
| Gene3D | 232 | 323 | 92 | 5.8E-21 | ||
| PRINTS | 233 | 246 | 14 | 2.7E-5 | – | |
| ProSiteProfiles | 236 | 258 | 23 | 5.094 | ||
| ProSiteProfiles | 259 | 282 | 24 | 5.802 | ||
| Pfam | 260 | 317 | 58 | 2.0E-9 | ||
| SMART | 305 | 330 | 26 | 47.0 | ||
| Gene3D | 324 | 425 | 102 | 3.7E-21 | ||
| Pfam | 333 | 392 | 60 | 2.6E-8 | ||
| SMART | 355 | 378 | 24 | 6.8 | ||
| ProSiteProfiles | 357 | 379 | 23 | 5.725 | ||
| ProSiteProfiles | 381 | 402 | 22 | 5.171 | ||
| MobiDBLite | 442 | 468 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0008400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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