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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0012300 |
| Transcript ID | LotjaGi3g1v0012300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-galactosidase; TAIR: AT5G20710.1 beta-galactosidase 7; Swiss-Prot: sp|P49676|BGAL_BRAOL Beta-galactosidase; TrEMBL-Plants: tr|A0A151UGS6|A0A151UGS6_CAJCA Beta-galactosidase; Found in the gene: LotjaGi3g1v0012300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1332202..1335175) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCGTGTAACAAGTAATAGCAAATTTAAGATTGTAGCTAATTGTTAGTTGCAGATAAGTAACCAAGAAGATAAAAATA TAAAAAAGATATAACAAATTTAACTTTGTGTATATCATCATTTCTGTTGCATAATTGGATATCTAGGGAAGGATAACCAT AAAAAAGTCAAAAGGACATTCCATCCATATCTATAGGGTGCATATCCATCCTTACATGTCTATTCCATAATCACAGACTC ACATACTATTTTAGCTAGGAAGACAAAATCAATTAGTTGTTTATAAGTTATTTTAAGTAACTAATGTTCTTATATAAACC TTGCGTCCTATTTAGTATCTACAATAACTCATTGTGAACAATCATATATGAGAGTAATGGGGTCTATCTCTTGGGTTGGG ATTCTTCTTTTGAGCCTAGCTCTGCTAAGCTCATGCCTCGCGGTAGAGGTTAGTTATGATGCAAATGCTCTTATTATTAA TGGAGAAAGACGCATTATCTTTTCTGGTGCAGTCCATTATCCACGAAGCACAGTGGAAATGTGGCCAGACATTATGCAAA AGGCTAAGGATGGAGGTCTTGACGCCATTGAAACTTATATCTTTTGGGATCGCCATGAACCTGTTCGCCGCGAGTATAAT TTCACCGGAAATTTGGATTTTGTCAAATTTTTCAAGTTAATGCAAGAGGCTGGGTTGTACGGCATTCTAAGGATTGGTCC TTATGTTTGTGCGGAATGGAACTATGGAGGCTTTCCACTTTGGCTGCACAACATGCCGGGGATTGATTTGAGAACCGATA ACCCGGTTTACAAGAATGAAATGCAAATTTTCACAACAAAGATCGTGAACATGGCCAAAGAAGCAAATTTGTTTGCATCA CAAGGAGGACCAATTATTCTAGCTCAAATTGAGAATGAATATGGAGACATCATGTGGGGTTACGGAGCTGCAGGGGAGTC ATATCTCAAATGGTGTGCACAAATGGCTCTAGCACAAAACATTGGTGTTCCATGGATCATGTGTCAGCAGAACAATGCTC CTGCGCCTATGATCAACACTTGCAATGGATATTATTGTGATTGGTTTAAGCCAAATAGCCCTACAAGTCCTAAAATGTTC ACTGAAAATTGGATTGGGTGGTTCCAAAAATGGGGTGAAAGGGTTCCCCATAGAAGCGCTGAAGATTCAGCATTGTCCGT TGCACGTTTCATCCAAACCGGTGGGGTGTTAAATAATTACTACATGTACCATGGAGGAACCAACTTTGGCCGCACGGCAG GAGGCCCATACATAACAACGTCTTATAGCTACGATGCACCAATTGATGAGTATGGAAATTTGAATCAACCCAAATGGGGA CACCTTAAGCAGCTTCATGCAGCAATAAAATTAGGGGAAAAGATTCTCACTAACGGAACAAGGACAGACACTGATTTTGG CAACAGCGTCACACTAACAACATACACGGATGCCACAGGAGCAAGGTTTTGTTTCATTAGCAATATGGACGAAGGCAAAG ACGCAAACATTGACTTGAAAAATGATGGCCATTACTTTGTCCCTGCTTGGTCTGTGACCATTCTCGATGGTTGCAACAAA GAAGTTTTCAACACTGCAAGAGTTAACAGCCAAACCTCAGTAATGGTGAAGAGGAGTGATGATGCTTCCGCAAAGCTCAC TTGGGCATGGATAGTGGAGAAAAAGAAAGATACCCTAAATGGAAGGGGAAGTGTAAAAGCACACTCACTTCTCGAGCAGA AAGAACTAACAATGGACGCCAGTGACTACTTATGGTACATGACTAGTGTTGATATCAACGACACCTCCGTATGGAGCAAT GCCACTCTTCAAGTGAACACTGAGGGTCACACCCTTCATGCTTTTGTTAATAAGAGGTATGCAGGATACCAACATAGCCA ATGGGGAAATAACTTCACCTATGAGAAAGAAGTTTCTTTGAAGAACGGAACAAACATCATAACTTTACTTAGTGCCACCG TTGGGCTTCCAAATTATGGCATAGGATTCCATAAGATCAAGACTGGCATAGCAGGTGGTCCTGTTAAGTTAATCGGAAGC AACAATGTGGAAATAGATTTGTCAGCCAACCAGTGGTCTTACAAGGTCGGTTTGAATGGCGAGAGAAAACGTATTTATGA TCTGCACCCACACGCCGGTGTATCATGGAGGACTAATGGATCTTACCCTGTTGGAAAACCCTTGACTTGGTATAAGGCAG AATTCAAAGCTCCTTCTGGATCAAACCCTGTGGTGGTGGACTTGCAAGGCTTGGGCAAAGGACATGCTTGGGTGAACGGA CACAGCATTGGCCGTTATTGGCCTTCATGGCTTATCGGCACCAATGGATGCAGTGACTGGTGCGACTACCGCGGACGCTA TAAGAAGGAAAAGTGCAACACCGGTTGTGGTGAACCATCACAAAGGTGGTACCATGTGCCAAGATCATTCTTGAACAATG ACAAGAACACATTGATTCTGTTTGAAGAAGTAGGTGGAAATCCTCAAAATGTTTCCTTCCAAACAGTGACAGCAGGAACC ATTTGTGCCAATGTATATGAAGGCCAAACATTAGAACTAGCATGCCAAGGTGGACAAGTAATCTCACAAATCCAATTCGC TAGCTTTGGCAACCCACAAGGGCAGTGTGGTTCGTTCAAGAAAGGAAATTGGGAAGCTACCAATAGCCAATCTGTGGTTG AAGCAAATTGTCTTGGAAAGAAAAGTTGTGGGTTTACAGTGAACAAAGAAGCATTTGGTGTTACAATGAGTCCAATGCAA GTAAATAATGGTGTTGCCACCTTAGCTGTGCAAGCAGCGTGTTAAGTCAATGTTTTCTCCAATCAAAGTGGAAATGAAAT TTTTTAAATTTTAACATGAATATTTTTCCTTATGTGTTTTGTATATCTACTGATTTCAAAGGGAGATTTTTGTATGACAT GTGTATCATGGGAG
CDS sequence (LotjaGi3g1v0012300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGTAATGGGGTCTATCTCTTGGGTTGGGATTCTTCTTTTGAGCCTAGCTCTGCTAAGCTCATGCCTCGCGGTAGA GGTTAGTTATGATGCAAATGCTCTTATTATTAATGGAGAAAGACGCATTATCTTTTCTGGTGCAGTCCATTATCCACGAA GCACAGTGGAAATGTGGCCAGACATTATGCAAAAGGCTAAGGATGGAGGTCTTGACGCCATTGAAACTTATATCTTTTGG GATCGCCATGAACCTGTTCGCCGCGAGTATAATTTCACCGGAAATTTGGATTTTGTCAAATTTTTCAAGTTAATGCAAGA GGCTGGGTTGTACGGCATTCTAAGGATTGGTCCTTATGTTTGTGCGGAATGGAACTATGGAGGCTTTCCACTTTGGCTGC ACAACATGCCGGGGATTGATTTGAGAACCGATAACCCGGTTTACAAGAATGAAATGCAAATTTTCACAACAAAGATCGTG AACATGGCCAAAGAAGCAAATTTGTTTGCATCACAAGGAGGACCAATTATTCTAGCTCAAATTGAGAATGAATATGGAGA CATCATGTGGGGTTACGGAGCTGCAGGGGAGTCATATCTCAAATGGTGTGCACAAATGGCTCTAGCACAAAACATTGGTG TTCCATGGATCATGTGTCAGCAGAACAATGCTCCTGCGCCTATGATCAACACTTGCAATGGATATTATTGTGATTGGTTT AAGCCAAATAGCCCTACAAGTCCTAAAATGTTCACTGAAAATTGGATTGGGTGGTTCCAAAAATGGGGTGAAAGGGTTCC CCATAGAAGCGCTGAAGATTCAGCATTGTCCGTTGCACGTTTCATCCAAACCGGTGGGGTGTTAAATAATTACTACATGT ACCATGGAGGAACCAACTTTGGCCGCACGGCAGGAGGCCCATACATAACAACGTCTTATAGCTACGATGCACCAATTGAT GAGTATGGAAATTTGAATCAACCCAAATGGGGACACCTTAAGCAGCTTCATGCAGCAATAAAATTAGGGGAAAAGATTCT CACTAACGGAACAAGGACAGACACTGATTTTGGCAACAGCGTCACACTAACAACATACACGGATGCCACAGGAGCAAGGT TTTGTTTCATTAGCAATATGGACGAAGGCAAAGACGCAAACATTGACTTGAAAAATGATGGCCATTACTTTGTCCCTGCT TGGTCTGTGACCATTCTCGATGGTTGCAACAAAGAAGTTTTCAACACTGCAAGAGTTAACAGCCAAACCTCAGTAATGGT GAAGAGGAGTGATGATGCTTCCGCAAAGCTCACTTGGGCATGGATAGTGGAGAAAAAGAAAGATACCCTAAATGGAAGGG GAAGTGTAAAAGCACACTCACTTCTCGAGCAGAAAGAACTAACAATGGACGCCAGTGACTACTTATGGTACATGACTAGT GTTGATATCAACGACACCTCCGTATGGAGCAATGCCACTCTTCAAGTGAACACTGAGGGTCACACCCTTCATGCTTTTGT TAATAAGAGGTATGCAGGATACCAACATAGCCAATGGGGAAATAACTTCACCTATGAGAAAGAAGTTTCTTTGAAGAACG GAACAAACATCATAACTTTACTTAGTGCCACCGTTGGGCTTCCAAATTATGGCATAGGATTCCATAAGATCAAGACTGGC ATAGCAGGTGGTCCTGTTAAGTTAATCGGAAGCAACAATGTGGAAATAGATTTGTCAGCCAACCAGTGGTCTTACAAGGT CGGTTTGAATGGCGAGAGAAAACGTATTTATGATCTGCACCCACACGCCGGTGTATCATGGAGGACTAATGGATCTTACC CTGTTGGAAAACCCTTGACTTGGTATAAGGCAGAATTCAAAGCTCCTTCTGGATCAAACCCTGTGGTGGTGGACTTGCAA GGCTTGGGCAAAGGACATGCTTGGGTGAACGGACACAGCATTGGCCGTTATTGGCCTTCATGGCTTATCGGCACCAATGG ATGCAGTGACTGGTGCGACTACCGCGGACGCTATAAGAAGGAAAAGTGCAACACCGGTTGTGGTGAACCATCACAAAGGT GGTACCATGTGCCAAGATCATTCTTGAACAATGACAAGAACACATTGATTCTGTTTGAAGAAGTAGGTGGAAATCCTCAA AATGTTTCCTTCCAAACAGTGACAGCAGGAACCATTTGTGCCAATGTATATGAAGGCCAAACATTAGAACTAGCATGCCA AGGTGGACAAGTAATCTCACAAATCCAATTCGCTAGCTTTGGCAACCCACAAGGGCAGTGTGGTTCGTTCAAGAAAGGAA ATTGGGAAGCTACCAATAGCCAATCTGTGGTTGAAGCAAATTGTCTTGGAAAGAAAAGTTGTGGGTTTACAGTGAACAAA GAAGCATTTGGTGTTACAATGAGTCCAATGCAAGTAAATAATGGTGTTGCCACCTTAGCTGTGCAAGCAGCGTGTTAA
Protein sequence (LotjaGi3g1v0012300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRVMGSISWVGILLLSLALLSSCLAVEVSYDANALIINGERRIIFSGAVHYPRSTVEMWPDIMQKAKDGGLDAIETYIFW DRHEPVRREYNFTGNLDFVKFFKLMQEAGLYGILRIGPYVCAEWNYGGFPLWLHNMPGIDLRTDNPVYKNEMQIFTTKIV NMAKEANLFASQGGPIILAQIENEYGDIMWGYGAAGESYLKWCAQMALAQNIGVPWIMCQQNNAPAPMINTCNGYYCDWF KPNSPTSPKMFTENWIGWFQKWGERVPHRSAEDSALSVARFIQTGGVLNNYYMYHGGTNFGRTAGGPYITTSYSYDAPID EYGNLNQPKWGHLKQLHAAIKLGEKILTNGTRTDTDFGNSVTLTTYTDATGARFCFISNMDEGKDANIDLKNDGHYFVPA WSVTILDGCNKEVFNTARVNSQTSVMVKRSDDASAKLTWAWIVEKKKDTLNGRGSVKAHSLLEQKELTMDASDYLWYMTS VDINDTSVWSNATLQVNTEGHTLHAFVNKRYAGYQHSQWGNNFTYEKEVSLKNGTNIITLLSATVGLPNYGIGFHKIKTG IAGGPVKLIGSNNVEIDLSANQWSYKVGLNGERKRIYDLHPHAGVSWRTNGSYPVGKPLTWYKAEFKAPSGSNPVVVDLQ GLGKGHAWVNGHSIGRYWPSWLIGTNGCSDWCDYRGRYKKEKCNTGCGEPSQRWYHVPRSFLNNDKNTLILFEEVGGNPQ NVSFQTVTAGTICANVYEGQTLELACQGGQVISQIQFASFGNPQGQCGSFKKGNWEATNSQSVVEANCLGKKSCGFTVNK EAFGVTMSPMQVNNGVATLAVQAAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| ProSiteProfiles | 1 | 23 | 23 | 5.0 | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| PANTHER | 13 | 825 | 813 | 0.0 | – | |
| PANTHER | 13 | 825 | 813 | 0.0 | ||
| Phobius | 21 | 25 | 5 | - | – | |
| Gene3D | 24 | 342 | 319 | 1.5E-109 | – | |
| Phobius | 26 | 825 | 800 | - | – | |
| SUPERFAMILY | 27 | 341 | 315 | 2.54E-97 | ||
| Pfam | 35 | 339 | 305 | 4.7E-112 | ||
| PRINTS | 38 | 55 | 18 | 1.5E-75 | ||
| PRINTS | 59 | 77 | 19 | 1.5E-75 | ||
| PRINTS | 114 | 133 | 20 | 1.5E-75 | ||
| PRINTS | 171 | 186 | 16 | 1.5E-75 | ||
| ProSitePatterns | 173 | 185 | 13 | - | ||
| PRINTS | 250 | 265 | 16 | 1.5E-75 | ||
| PRINTS | 287 | 302 | 16 | 1.5E-75 | ||
| PRINTS | 307 | 323 | 17 | 1.5E-75 | ||
| Pfam | 347 | 419 | 73 | 2.1E-17 | ||
| SUPERFAMILY | 451 | 562 | 112 | 7.65E-10 | ||
| Gene3D | 571 | 669 | 99 | 8.3E-11 | ||
| SUPERFAMILY | 580 | 741 | 162 | 3.06E-24 | ||
| PRINTS | 617 | 631 | 15 | 1.5E-75 | ||
| PRINTS | 644 | 660 | 17 | 1.5E-75 | ||
| Gene3D | 722 | 825 | 104 | 3.9E-7 | ||
| ProSiteProfiles | 736 | 825 | 90 | 12.907 | ||
| Pfam | 744 | 825 | 82 | 4.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi3g1v0012300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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