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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0014600 |
| Transcript ID | LotjaGi3g1v0014600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT1G80400.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr|A0A0B2SIJ0|A0A0B2SIJ0_GLYSO E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0014600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1542002..1545786) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGTTACTTCTCTGAGTCCTAATAGCAACGCCCAAACCGACCAGCATCCTTTGCTGATGGAGCAGCCAGAAGCCCG TAGCGGCCGTCAGCATGTAATTGACATTGCAAGGAATGATGAAGCTTTATCCACATCGTCGCATACCGATCAACACTCTG AATTGCATGTACCACAGGACGAGGAACAACCAGCTGGGGGTACCCAAGATTCGACTCATCAAACATTATCGTCTACTGCA TCCAGATTAAACTCTAGAAATTCCTCTTCGTTCCGAAGAGGTGAGGGGTACGGTCATCAAAGAAGGAGTCCATTAAATTC TGGACTGTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCTATTGTGGTTTTGTCATTGTCCAGGA ATGAAAATCCCCAAGCCCCATTGTTTGCTTGGGTTGTGGGTTATGCAGCTGGTTGTGTTGCCACACTTCCTATTCTATTT TGGCGTTTTCGAAACCGTTATCAAAGCACTGAACAACATACCTCTCAGCCATCTCAAGGATCTTCTGGAAGCAATCCTCC GGAGCGTACTTATACTTCCATCTATGTTTCTCATGAGGAGAATGGTCATGCTGCACAATCAGCAGCAAGAAACACTTTAA TTCCCAGAGCCTTTACCTCTAGGTATTTTTTTAACCTTCACTTTTATTTCCTTGTCTTTTCTTTTTTTTTGGGGGGGGGG GGGGGAGGGGGTATTCACCTTTTGTTTTGATGAGTATTACATCTTTTCCCCTATTGATGTTATGATGTCCCTGATATTTT ATATAGGATGCTGCATAACGAGGAAAAAGAATAATAGAAAATAAGTTTTCGTTATAGCAGGATGGATGATACATCTACAT TATGGATGCGTTTCTTTTTGCCACCATTTTTCTTCTCGTATTCAAAACACTTTTATTTGCAGGTTTATTTGGTTTGTTTG TTGAACTTTTAAATATATTCGACCTTTTTTTTGGGATAAATTTTTTATCTATAATTCTCAAATAATCGCTTCAGGTGTTA TTTGTTAATTGTCCATGCTGTGCATGCTTTATTAGTACATTATATTTTCCCAGCAAATAACCTTATTCTTACTCCATAAA CATCATGGGTGGCAATGCCAATGGGATTGCCATTGAGCGGGGAAGTAAAATTGTCTTGATTAAAAGTGTCCAATATTTAA CTCCAAAGAAGTCATTTGAGTTCATTTGTTTATTTACATTCTGTTTTGGGGTAGAGTGGGGGGTTGTATATGGATGCAAG CAGTACAGAACCCTGGGAAGGGGTAGGAGACGGACAACCACATCATAAGTTTTCCACTCCCATGCCACTAATCACTTTTT TAGACAAGGCTCCCTACATGACCATTGGGCTAACATGGCCTCAATTAATGCATAATATTGAAATATTATCTTCATCTTCT CAATTTTTTTAATTAAAACTCAGGCTCATGTAGTATCCATAACATGTGGCAGTAGACAGTAGTGGTAAAAGTATTATTAT GGTTCGTTTTTTTGCGATAAGGTATTAGATTTAAAACAGACTTTCAGTAGTGACATTTCTTTTCACCAATGATGGTATTA CCATGAATAGCATGTTTAGTTCCATGTTTGCAAGTGTCAGAATCAGTGTTATCAAATATCTGCCATGGCGGTTTGTTGCC TTTCCGCCATGGCCGATATCCCGCCATTATTTGTCATGTATGGCGGGATTTTGGCTTTCCGCCATCCGCATTTAACAACA CTGGTCAGAATTGACTTTTCATTATCAGAATCATTTATAGGTGTTTGGATGTTTCCTTTTGCAATTTATTCTAGGCTTCT AGCTCTAAAATTAATTTTGGGATAAAGCTATAAACCCTATCTTCTGCAGTGGACATTATCAATTGTGGGATTTCATAGTT TGATTTGACTACATAAATGTATTCAAACATAAATCCTATCATAAATATATTCAAACATAAATCATTTCACCTTCAACTCA CTTTTACCAAATCAATTATATCCACAATCAATTATGACAATGCTAATCCAAAGTTCCAAATACACACAAGAATTATTATT GCACCAGTTAAAGTACAAGACCTTGTTTCATGAAGTTATTGATGTTGAATTCCAGTCAGTACATAACCTTATCTAATTTT ATATACGTTTGATAAATACACTGAGCAGAGGAACTTCTGGTTAAATTACTGGCTTGATTAAATATTTTGTGAGCTTCTTC TTGTTTTTGGTGAATAGGGGAGAAATGAAAACCTCTTGATGTTCAATCTGATTTTATCCTTGTTTATTCCAAAACTAGCA CACTGAGCAGAAAAAATGTTTTGCTAAATTGCAGGCTCAATGGAATAGTAGACCATTTCAAGATGGCCTTGGATTGCTTC TTTGCAGTTTGGTTTGTTGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCCCAATTATATAG GTACCTGTCACACTGTTTTTGCACTACGTCTACCAGCATTTTAATTTCTCAAGCTTTTCAAATAATCTAGGCCTCATTGC TTGCAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATCGGATATGCTATGCCATTTATACTGTGTGCAACTATTTGCT GCTGCCTTCCTTGCATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACTGTAGAATCTATT AATGCTCTTCCAATCTACAAGTTCAAATTGAAGAACTATCAAAATGTTGATGATCATGATAACATCAATGCAGCTATAGA TGAAGGTGGGATTTTAGCTGCCGGGACAGAAAAGGAGCGGATGATTTCCGGAGATGATGCTGTAAGTTTTATTGATGGCT ATATTGTTTTGTAATTATAAACTGAAAATGTTAGCCTCAAGCCTATGCTTACACTCAACCAGAAGAGGAATGAATAATAA GTTATATATAAGGGCTTGTTTGACTTCTATCTTCATTCTCTGTTTTCAGCTTTCATTACAAAATTGTCACTTTGTTTTCA AAGAAGTATAGGAAATGTTGAAAACAAAACATGAAAATAGAAACCGCATGCCTTAAATAAATCTTACATAGTGTTTGATT GGAGGAGATAGGAGTGGAGGGTAAGGGAGGAGAAGGTTTTTTTTCTTTTTCTAATCTTGTTTGGTCAAGTTTTAGGAGGG GAGGGGGAGATGAATGGAAGGGGTCAGAACCCCTAATTCAATTTTGTCTCTCCTCCAAAAGTAGAGTGATTTGGAGGGAA AGTAATATATGACAAAATGTCCTTTCTCTTATTTTGAAATATAGAATTGTGTTTTTAATTATGGGTAGTAATAGTAAATT TGTTTCAAAATTCCCTCACTCTCCTCTTGAACCAAATAAGAAAGGGGTTACTTCCCTGCCTCCCCCCTCCCCTCCTCTTA ACCAAACATGATAAGAATTGAAATTTCTCCTCCCTCTCCTATCCATTCCATCCATTAAAATCCCTCCATTTAAATTTATA GCTATAATTATGATTTATGCCCTTCCAAAATTTCTATGTTGCCTCTCTTTCAATGTAATAGCTTTTCTGAAATTTATTCC AGGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGTTACCATGCTCTCATGTCTTTCACGTG GGGTGTGTTGACAAATGGTTAAAGATAAATGCATCCTGCCCTCTTTGTAAAAGTGAAGTTGGTACAAGTATTGAAGAGTC ACCTTAAGCCTGGGACTCCTGTCCT
CDS sequence (LotjaGi3g1v0014600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTTACTTCTCTGAGTCCTAATAGCAACGCCCAAACCGACCAGCATCCTTTGCTGATGGAGCAGCCAGAAGCCCG TAGCGGCCGTCAGCATGTAATTGACATTGCAAGGAATGATGAAGCTTTATCCACATCGTCGCATACCGATCAACACTCTG AATTGCATGTACCACAGGACGAGGAACAACCAGCTGGGGGTACCCAAGATTCGACTCATCAAACATTATCGTCTACTGCA TCCAGATTAAACTCTAGAAATTCCTCTTCGTTCCGAAGAGGTGAGGGGTACGGTCATCAAAGAAGGAGTCCATTAAATTC TGGACTGTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCTATTGTGGTTTTGTCATTGTCCAGGA ATGAAAATCCCCAAGCCCCATTGTTTGCTTGGGTTGTGGGTTATGCAGCTGGTTGTGTTGCCACACTTCCTATTCTATTT TGGCGTTTTCGAAACCGTTATCAAAGCACTGAACAACATACCTCTCAGCCATCTCAAGGATCTTCTGGAAGCAATCCTCC GGAGCGTACTTATACTTCCATCTATGTTTCTCATGAGGAGAATGGTCATGCTGCACAATCAGCAGCAAGAAACACTTTAA TTCCCAGAGCCTTTACCTCTAGGCTCAATGGAATAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGG TTTGTTGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCCCAATTATATAGGTTATGTATTGT GTTTCTTACCTTTAGCTGTATCGGATATGCTATGCCATTTATACTGTGTGCAACTATTTGCTGCTGCCTTCCTTGCATAA TTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACTGTAGAATCTATTAATGCTCTTCCAATCTAC AAGTTCAAATTGAAGAACTATCAAAATGTTGATGATCATGATAACATCAATGCAGCTATAGATGAAGGTGGGATTTTAGC TGCCGGGACAGAAAAGGAGCGGATGATTTCCGGAGATGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATG ATGAGCTTAGGGAGTTACCATGCTCTCATGTCTTTCACGTGGGGTGTGTTGACAAATGGTTAAAGATAAATGCATCCTGC CCTCTTTGTAAAAGTGAAGTTGGTACAAGTATTGAAGAGTCACCTTAA
Protein sequence (LotjaGi3g1v0014600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVTSLSPNSNAQTDQHPLLMEQPEARSGRQHVIDIARNDEALSTSSHTDQHSELHVPQDEEQPAGGTQDSTHQTLSSTA SRLNSRNSSSFRRGEGYGHQRRSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWVVGYAAGCVATLPILF WRFRNRYQSTEQHTSQPSQGSSGSNPPERTYTSIYVSHEENGHAAQSAARNTLIPRAFTSRLNGIVDHFKMALDCFFAVW FVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIY KFKLKNYQNVDDHDNINAAIDEGGILAAGTEKERMISGDDAVCCICLAKYADDDELRELPCSHVFHVGCVDKWLKINASC PLCKSEVGTSIEESP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 108 | 108 | - | – | |
| PANTHER | 1 | 414 | 414 | 1.7E-217 | – | |
| PANTHER | 1 | 414 | 414 | 1.7E-217 | – | |
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 102 | 102 | - | – | |
| MobiDBLite | 64 | 94 | 31 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| Phobius | 109 | 129 | 21 | - | – | |
| Phobius | 130 | 140 | 11 | - | – | |
| Phobius | 141 | 161 | 21 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 162 | 230 | 69 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| Phobius | 231 | 249 | 19 | - | – | |
| Phobius | 250 | 260 | 11 | - | – | |
| Phobius | 261 | 294 | 34 | - | – | |
| TMHMM | 266 | 299 | 34 | - | – | |
| Phobius | 295 | 415 | 121 | - | – | |
| Gene3D | 345 | 411 | 67 | 6.2E-20 | ||
| SUPERFAMILY | 355 | 410 | 56 | 1.98E-20 | – | |
| CDD | 362 | 404 | 43 | 2.89314E-19 | – | |
| SMART | 362 | 404 | 43 | 0.0048 | ||
| Pfam | 363 | 404 | 42 | 5.0E-13 | ||
| ProSiteProfiles | 363 | 404 | 42 | 12.548 | ||
| SMART | 363 | 403 | 41 | 7.5E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0014600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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