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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0015500 |
| Transcript ID | LotjaGi3g1v0015500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ran-binding protein 1 domain-containing; TAIR: AT1G52380.1 NUP50 (Nucleoporin 50 kDa) protein; Swiss-Prot: sp|Q9C829|NU50A_ARATH Nuclear pore complex protein NUP50A; TrEMBL-Plants: tr|A0A0B2NU93|A0A0B2NU93_GLYSO E3 SUMO-protein ligase RanBP2; Found in the gene: LotjaGi3g1v0015500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1638046..1641772) extracted from Lotus japonicus Gifu genome v1.2.
GAAATTTTTTGACACTGTAAAAAAAAAAGAAAAAGAATAACGAGAGAGTGATGATGGTGCCAGCTGTTTGATCGATTTAT ATTGCTGCTGCCGCTATCATCGTCTTCCCTCTCTGCACTGAACTCTTCTCATCGTGTTAGGGTTCCGATTCCTTCATTCA TCACTGTTCTTCACTTCTTCTCCTTCAGGTTCTTCAATACAATACTTCAATTCACTTCACTATTTCAACCTAATTTCACG TTTTCTGTTTCTCTAACTCTTCAATTTCGCAGACACCGATACAGCTGAATCGTGGAATTGAAACCTAACCATATCACTGT TCTTCGTTTTGCCTGTAAGTTCTTCAATTTCTTTGATTACTACTGTTACTTCTGCTCATTGATTTGTTATTCTCTGTGAT TTTTAGTTTTTACTATTAACCCTAGATTCTGTGTTTCCAATACATAGAGAGAATTTCGCATTACTTGTTTTTCATAGGTT CTTGGTGACTGTATCTCCGTTTTTCCAGGTCCCCTGTAATTGCTCTTGAGATTCCAATCAGGGTTTTAATTTTTTTTTCT TTTTCCTCAAATTTTCTTTGCTCTTGAGATAGAACGGGCTAAGTAAATCTTTCTAGGGTTTTCTGTGTTAAAGCTTGAAA ATTTAGTGATGGGCAGTGTCTGAAAAATATGATGTTTGAATTTTTATTTTTTTCTGATTATCTTAAGCTGTTTGGACAGG ATACAAGCTTCTCGAAACCAAATTATGCGATTAACTACTTATGAATTGTGTAGTTTTTTAATATGTTGGTTCTCATTACT GGCTTGATTGCTTTAGCTGGTAGTTACTAGTTCCTGTGTAATGTTATGCCTACATACATCAGAATTGTGTAGTTCTTTTT TATGTTGGTTCTCGTTACTGGCTTTATATATATACATTTTGCTGCTTTGTTCTATATGGGATCGAATTATTTTAACTTTT AAGCTAAAAATGTTGTTAGAAGGTGTGCATATCATGGATAGTGTAGGTGTTGTATTCTCAGGAAAATATTTTGATTACCT TGTGAAGTTCACTTTTGATGGGTTGTCTTGTCTTGCCTGTGTTTCTGTTGGGTAGTACTTTCCTACTATATGGTATTTTC TCGATGATGTTTACATGTTATGAATCCATATGCCATTATCAATGTGGGAGTGGATCCTCTCATGTTTTTTTCCCACGGCC TTATTATTTAAAAGTTGTGTCTCTCTGTCTCTTTGCATTCACAAATGTTATATGGTCTATCTGTTCAATGTCGAATGCAT ATGGGAGAGAGAGATTCAAAATTTTCAACTGCGATGGTCATGTGAAAAGTTAACATAAGAAGATCCATAACCTTTTTCAT ATAGGTTGTGTTATCCTTGTTGTTTTGAATTGTGCTCCATTTGAGGAAAAATGAATGAGAATTGAACTTGCCTGATTGCA GCTATTTACTACAACTTGGTATAATATCTTAGGTTCTAGTTCATTTATTGATTTCTTTCTTCAATGGGGGATGCTGAGAA TGCCCTTCAACCTTCAAAGAAAAGAGCTGCTGGAAGGGAGCTCACTCGGGATACTCCTATTGATGATGAGGAAGATTCCC CTGATCTTGAGAGTGGCACTTTCAAGAGAGCCAGTGAAGAGGTTCTGGCAAGCAGAAGAATAGTCAAAGTTCGTCGCCAA CAAACTACTTCTGCTCCTTCTTCAAATCCCTTTGCTGGAATTCGCCTGGTTCCCTCCTCTGGATCCACGGCTAATCCTGC TGAAGCTACTACTGAAGTACAAACTGTTGCTGACGAGTCTAAAGGTAGTGATGATACAGATAAGGGTTCTGAGAAAGCTA AAGAAGAGGATACTAAGCAGTCAGAGAGCAAACCTGATGAGAATGCTGCAAAAGGAAGCAATGCCGATGAGGAGCATGCT GCAGAAAAGGAGAATACTGGTATTAAACCAGAGGTAGATAAAGAGAAAAGTGAGGGAGTCAGTAAAAGTGATAATGAGAA TAAGGATGCAGCAGGTAAGGAGAGTGCCAGTGAGGTGGATGAAGGGCAAACTAAGGATCACAATGATTCTGAAAATATTG ATAAGAAAGAAAACACTGAAGATGGGGATAAGAAAGACGACAAAGCTGAAAGTGCAGAACCAAGTGCTGAAGGTGGAAAT TTAAAGTCATTTCAACTGCTCTCAAGTAACCAAAATGCCTTCACAGGTGTTGCTGGAACTGGATTTTCTACCACCTCATT TTCCTTTGGTACCTCTTCAAATGATGGGTCCAGTTCTATTTTTGCAATGAAAAATGACAAACCTTTTGGTCTGGGTTTAA CCAACAATGGAAGTTCTGTTTTTGGGGCATCCTCTGTTGCTAAGAGTGAGGGAAATGGTCTTGCAATGCAGGAGGTTGCA GTTGAAACTGGTGAAGAGAATGAGAAAGTGGTTTTCAATGCAGATTCGGTACTCTTTGAGTTTGTTGATGGAAGTTGGAA GGAACGAGGAAAGGGAGAGCTGAAGGTCAATGTTACAAGTGGGTCAGAAAAGGCCAGAATTCTTATGAGGTCCAAAGGAA ATTTGAGACTGATTATGAATGCACGTCTTTATGCTGATATGAAGCTCACAAATATGGACAAGAAGGGTGTTACTTTTGCC TGCATCAATAGCGCCAGTGAAGGGAAAGGTGGTCTTTCAACATTTGCTGTGAAGTTCAAAGATGTTTCCATAGTAGAGGA GTTCAAAGCAGCTGTAATGGAACATAAGGATGGCACATCGACAGTTCTTAAGACCCCAGAAAATTCTCCAAAGGCTTCTG ATGAATGAGAGAGATCCCATATTCCTGTTACACAAAGTATGTCTTGTTGTTAGATCTTCCTTTACTTTAGAAGAAATTTG CTATTCCGAGTTTGTTTGCCGTTACATGGCAGACTATCATATTTACCTAGCTGCACTAGAATTTAAGTCAAGTCCTCAAG TGATCATGGAACTTAATTTTGTATACTTCTTTGCCTTAGACTGCACAATCTTAGCTCTAGAACACTGAGACGTGCAATAG TGCTGTTATTTTACTGAGTCTATAATATTGTCGAATTTGAGAATCATTGGGCGTTTGTTGAATACTTCTTTATTTACTGG GGGCTGTTTTTCTTTTCTTTTTGAGAGGTGGGGTTCTAATACGATAAAAATCACTTTTCAAAGCTATTTAATTTTTTGCA GTAGTCAACGACAACCAAACAAAGCATGTCTCAACTAGTAACTTAGTATAACTTGAATTTGTAACCTGGCGAACAATTTG TTTTCTTTGCTCACGTGAAACTAGAGTCAGTTGGCATAACTTGGATTTGGATAGATTCCTATGTCTCTTGTTACTGCAAG ATACTTATTAGGATTTTATCAAATTTGATAAGAATTAATGTTGCATATTGGGACTGTCTCTCTAGCAGCAGCATCGTGCA GCCAATGTTAATTAACCATTGTGTACATGAAACACACCCCTAGGTCAGTGCCATTCATACTGGATGGAACTCTCCCTGTT TGGTTGCCTTATGTTCCCTTTGGCTCTTTGACGCTACTGATCCAAGATTGAGAGGGTAACAACGGTTATCATGAAGTGAA TGGTGGTTGAGAAATTTGTTGTTCTGAATAACTCAATAGGATACCTACAGGGGGGTACATGTTCATTCCGTTGTTCCAGA TGTCGAGCTGGTGTTTGATGAAGTTCGAGTTGTTGCTTTCATTCTAG
CDS sequence (LotjaGi3g1v0015500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGATGCTGAGAATGCCCTTCAACCTTCAAAGAAAAGAGCTGCTGGAAGGGAGCTCACTCGGGATACTCCTATTGA TGATGAGGAAGATTCCCCTGATCTTGAGAGTGGCACTTTCAAGAGAGCCAGTGAAGAGGTTCTGGCAAGCAGAAGAATAG TCAAAGTTCGTCGCCAACAAACTACTTCTGCTCCTTCTTCAAATCCCTTTGCTGGAATTCGCCTGGTTCCCTCCTCTGGA TCCACGGCTAATCCTGCTGAAGCTACTACTGAAGTACAAACTGTTGCTGACGAGTCTAAAGGTAGTGATGATACAGATAA GGGTTCTGAGAAAGCTAAAGAAGAGGATACTAAGCAGTCAGAGAGCAAACCTGATGAGAATGCTGCAAAAGGAAGCAATG CCGATGAGGAGCATGCTGCAGAAAAGGAGAATACTGGTATTAAACCAGAGGTAGATAAAGAGAAAAGTGAGGGAGTCAGT AAAAGTGATAATGAGAATAAGGATGCAGCAGGTAAGGAGAGTGCCAGTGAGGTGGATGAAGGGCAAACTAAGGATCACAA TGATTCTGAAAATATTGATAAGAAAGAAAACACTGAAGATGGGGATAAGAAAGACGACAAAGCTGAAAGTGCAGAACCAA GTGCTGAAGGTGGAAATTTAAAGTCATTTCAACTGCTCTCAAGTAACCAAAATGCCTTCACAGGTGTTGCTGGAACTGGA TTTTCTACCACCTCATTTTCCTTTGGTACCTCTTCAAATGATGGGTCCAGTTCTATTTTTGCAATGAAAAATGACAAACC TTTTGGTCTGGGTTTAACCAACAATGGAAGTTCTGTTTTTGGGGCATCCTCTGTTGCTAAGAGTGAGGGAAATGGTCTTG CAATGCAGGAGGTTGCAGTTGAAACTGGTGAAGAGAATGAGAAAGTGGTTTTCAATGCAGATTCGGTACTCTTTGAGTTT GTTGATGGAAGTTGGAAGGAACGAGGAAAGGGAGAGCTGAAGGTCAATGTTACAAGTGGGTCAGAAAAGGCCAGAATTCT TATGAGGTCCAAAGGAAATTTGAGACTGATTATGAATGCACGTCTTTATGCTGATATGAAGCTCACAAATATGGACAAGA AGGGTGTTACTTTTGCCTGCATCAATAGCGCCAGTGAAGGGAAAGGTGGTCTTTCAACATTTGCTGTGAAGTTCAAAGAT GTTTCCATAGTAGAGGAGTTCAAAGCAGCTGTAATGGAACATAAGGATGGCACATCGACAGTTCTTAAGACCCCAGAAAA TTCTCCAAAGGCTTCTGATGAATGA
Protein sequence (LotjaGi3g1v0015500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDAENALQPSKKRAAGRELTRDTPIDDEEDSPDLESGTFKRASEEVLASRRIVKVRRQQTTSAPSSNPFAGIRLVPSSG STANPAEATTEVQTVADESKGSDDTDKGSEKAKEEDTKQSESKPDENAAKGSNADEEHAAEKENTGIKPEVDKEKSEGVS KSDNENKDAAGKESASEVDEGQTKDHNDSENIDKKENTEDGDKKDDKAESAEPSAEGGNLKSFQLLSSNQNAFTGVAGTG FSTTSFSFGTSSNDGSSSIFAMKNDKPFGLGLTNNGSSVFGASSVAKSEGNGLAMQEVAVETGEENEKVVFNADSVLFEF VDGSWKERGKGELKVNVTSGSEKARILMRSKGNLRLIMNARLYADMKLTNMDKKGVTFACINSASEGKGGLSTFAVKFKD VSIVEEFKAAVMEHKDGTSTVLKTPENSPKASDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 434 | 434 | 7.6E-167 | – | |
| PANTHER | 1 | 434 | 434 | 7.6E-167 | – | |
| MobiDBLite | 1 | 43 | 43 | - | – | |
| Pfam | 13 | 73 | 61 | 1.8E-15 | ||
| MobiDBLite | 55 | 219 | 165 | - | – | |
| MobiDBLite | 55 | 96 | 42 | - | – | |
| MobiDBLite | 97 | 212 | 116 | - | – | |
| Gene3D | 286 | 426 | 141 | 8.2E-38 | ||
| SMART | 289 | 414 | 126 | 1.1E-18 | ||
| SUPERFAMILY | 295 | 416 | 122 | 3.23E-32 | – | |
| ProSiteProfiles | 296 | 413 | 118 | 18.993 | ||
| Pfam | 300 | 414 | 115 | 2.1E-20 | ||
| CDD | 302 | 417 | 116 | 4.15085E-62 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nuclear pore | Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. | ||
| Biological process | Intracellular transport | The directed movement of substances within a cell. |
Expression pattern of LotjaGi3g1v0015500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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