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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0015600 |
| Transcript ID | LotjaGi3g1v0015600.4 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1644766..1652509) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTATCACAAGCTTTCTGTTTTAACTGAGTCATTACTAGTTTCAATGGAGATTTTGCTATTGTAATTAACTCTGATTT TGTTCATGCTGTTTCAGACCATGGCCAAATCTTTTGAGGTTACTGAGTTACCAGGTACATGAGATTTTTAAGTCCATTTC TTCCTCTTGATACATTTTGCTTGGAGGCTTTTGATGCATTTGATTGAAGGCATAGTTTTATTGCATATTTCTTACTCTGG AAATCATTTGGCTCTTGTGCAACATGATTTTACAGTTAGATCAGCCAAGTTTGTTGCACGCAAACAGTGGGTTGTTGCTG GAGCAGATGATATGTTCATCCGTGTCTATAATTACAACACAATGGATAAAGTCAAAGTATTTGAAGCACATACAGACTAC ATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTGCTATCATCATCTGATGATATGCTCATTAAGCTTTGGGATTG GGAAAAGGGCTGGATTTGTACCCAGATATTTGAAGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGATA CAAACACCTTTGCCAGTGCATCTCTTGATCGAACCATAAAGGTATATCTGTGTTCTTGTTGCCGGTTGTTTCCTTTTCTT TAATTATTTTTTCTATTCTTTTATGATATAATGCATTGATGCATCTGTTATCTTCTCTTTCCAGATCTGGAATCTTGGCT CTCCTGACCCTAATTTTACATTGGATGCCCATCAGAAAGGAGTGAATTGCGTTGATTACTTTACAGGTGGTGATAAGCCT TATCTAATCACTGGTTCTGATGATCACACTGCAAAGGTATTGTTTCAATTTCAGTTTTCTTCTTCTTTTTTACTTGATTT ATATGTTCGTGTGTGTGTGTGTATATATATATGTAGCAATAATGTTAACAAAACCAATGAAACAGGTATGGGATTATCAG ACCAAAAGTTGTGTCCAGACTCTAGATGGTCACACACACAATGTGTCTGCTGTATGCTTTCATCCTGAACTTCCTATAAT CATTACTGGTTCTGAGGATGGTACAGTACGCATATGGCACTCGACAACTTACAGGTAATTTGAGATGCACAGATAACTGA GTTATGAGCTTTATTTTTATGTTTTTTCTGTTTGGCATATTCTGATGGAGACCAAAAGGAAACAACAGGAAAATATTGTA TTATCAGAGAATAGACACTGAAATGAAAAAGGGTCACAGTAGACGATATCCTCCACCTTCCTAGAGCCTATGGCTCCACA GATTCAAAATTCTCTGCCCAAAAGTAACTAAAACCACCATGTTGGTGAGTACCCATTCCAGAAACTAACTTGCCGAGTCA GCAAATTATTTATGGTCTTCCCCATTCTGCCCTTATATTGGAATAAACCGTACAGGTTTTGGGGTTTTTGTTTGGACCAT TATCAAGCTGACCTTGACTTTTAACTTCAAATTCAAGCCTAACATTCTAACACTGCCCCTTTGTATAATACAGCCTTGTC CTCACGTTAAAAAAAAACCTTGTCCTCAAGGCTGAATATTGGAAATTGACACCTGATAGTGAACTCATGCTTCCTGAAAG GTTCTTGCCTTCCATCATTGACCTCTATGTCCATTCCCTCAGGCAGATGCTGCTTGACTTGATTTTATCCCACTTCCATT TATTCGAGGAGACTTGTGACACATGCAACACTAGGTGGATTTTGGAAGTTACTGGAGTTGTAATTTTTAAGCCACTTTAC CAACCTGTTCCACAATCTGAAATGGACCATAATACCTCAAATCACAGGATTGATTCTTCTGTCCACACAATTGTTGTTGA TGTGTTCTGAGTTTCAAAAAGACCCATTCTCCAACTGTAAATGACTCCTCATGTCTGTGTTTGTCCCTCAATTTCTTCAT CCTATTCCTTGCTCTCTCCAAATTATACTTTATTTTTTTTCCTTCTCCCTTTGTCATCCACCCTTTTATTGTAACTTGAA CTATCTGGCTGTGGTTGACTTTTGACCTTAAAGAATGAGGCCTTTTACTGACATGCCATTATGTTCTTTTGAATAATATT GTGGCTGATTTGTGACTTCTTCACTTTTTCTTTTCACAGTTTCATAAGTGCATCTATGATCAGGAAGATTTATTCTGATG ACTAATCGCTAAATTTTATTTAAATTTGAGATAACACTAATATTAAGTTTGAATTGTACAGTGTTGTTTGTCTCTTTCTA TTTTATTTAGGTTATACTATCTTGGCATTTCATTACTTATTGTTTTCTCAATCTACTTACAGGCTTGAGAACACATTGAA CTACGGCCTTGAAAGAGTTTGGGCTATTGGATACTTGAAGAGTTCACGTCGGTGAGTTTTTTTTCAAATAAAACTTCTGC AATCAATTTCTTAGTCTTGTTATTTTGGGCCCTTGAATAACTGAGTAGAAACAGTGTCAAATTGTGCCTGAATAATGAAG TTTTCTTATCTTCACTCTTCTGTCATGACTTCAAAATAACCAATATAACCATCTTACAGGGTTGTGATTGGCTATGACGA AGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTATTTGGGCTAAAC ATAATGAAATTCAGACTGTCAATATAAAGAGCATAGGAGTAGATGCGGAGGTATGGACTCAATGTACCCTTTGCGGTATA ATATGTGAGCAAGAAGTGTAAGGTTCTTTTTCTTTTAGTGACACATGCGAGTACTATGCTTCTTAGGTTGCTGATGGAGA AAGGTTGCCTTTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTACCCCCAAGTGAGTCCATGTCATTCTTCTTAATTAT TTTGCATTCTTTTGCTCAGCTTCTCTAATTCTTATCATTTCTACTCTCATTATGCAATCATTGACAGATTACAGAAAAGT GGTATATGTGCATTATCTAGCATATCATTATCAGACATTTTGGTATATTCATGCTGACTTCATTATGCAGTATTTGTCAC ATTTTTCTTGAACCCTGTCCAAATTTTATTTTATTTGTATGCAAAAAAGCTTGTCATTGCATATAGGATTAAAGCGGCCA GCGAACCTTGACTTTTATGTTGAGTATATAATCGGGATATTGGTATAATTTTGCAATGTTTGACGTTGAAATTCAAAATT AATTGCATGTACCTCTGTTTTCTTGTAGAACTTAGATATCTGAGGGAATATGACTATTTAATGTTGCCAAATTACTGGGT AGTTCAGAACTATGTTTTGTAATCTCCAATCTATATCCAGAGAAGCAAGTTTTAAAATGTTAGTCCTTGTTGCTGGTTCA AGCAATATTTATTTGATTCGTGTGTAATGGCTTGATGTTTAATTATATGCAGAATTTAAAGCACAATCCTAATGGGAGAT TCGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACCGCGTTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTA GAATTTGTCTGGTCTACGGATGGAGAATATGCAGTCAGGGAAAGTACATCCAAGATTAAAATTTTCAGCAAAAATTTCCA GGTTTGCACTTTTGTTAAACTTTATTTACTCGTTAATCTTGTATTTTGTCTGGTGAAAGTGGTGATGAGAACCAACAAAT TGTAGCTTTTTCTCAAAAGGGTAAGCATAACTAGATCTTGCCATTCTTGTACTCTGTTATTGATAGCTCTCGGGGTAGAC CTCCTATCACAAAGGTTTACCAGAGGAGCTGTAAAGAGAGTTGTTAGTCAGTTAGTGGTTAGAGTTGGTTAGTATAACTG ACTATTAGTGGAGGGAAAGTTAGGATTCAAATGTATAAATAGGGGAAATGTTATTCAGTTAGTTCATTTTCTGGTTGTTA GTTGTTTGGAAGAGAGTGAGTCTCTCCAAATACTTACCTGTATCTGTTACACTCTGGTTCCTAAATTGGGAATTAGGGTT CCTTAACAATAATCTTTTCATTGTCACATCTGTCTTCTAAATGAAAAAATTTGCTCGTTGTGGATGTTTCAGGAAAAGAG GAGTGTCCGACCAACATTTTCAGCTGAACGAATATTTGGTGGTACTTTATTGGCAATGTGCTCAAATGATTTCATCTGCT TTTATGAATGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAGTGAGTGCTAGATTAGGTGACATCTAT TTTTCTCTGCTTTTCTTTCCTTATATTCAGTGTTTAATTTAATTTTGTTAATTTTCTTTTGTCAGAACCTCTATTGGGCT GATAGCGGTGATCTAGTTACAATTGCTAGTGATACATCATTCTACATCCTGAAGTACAACGTGAGGATTTTATGAACTTA ATCATTTTCTTATAGTTGCTGCCTTGCTTTAGCTGTATGATTCTTTTGTAGACCTTTTCTGTTGAAGCACTGTAAATATT TTGACTTCCATTGTTGCAGCGTGATGTTGTTTCATCGCATTTAGATAGTGGAAGACCCGTAGATGAGGAAGGTGTTGAAG ATGCTTTTGAGCTCCTTCATGAAATGAATGAACGTGTCAGGACTGGCATCTGGGTTGGGGATTGCTTTATCTACAACAAT TCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTATTAACTTTTATCCCTTGTTTAAAATAAAAAGAACCGCATAT TTTTTCTTGAAATACAAGGATCATATGAAACCTATTGATGCAACATTATGAATTCAGGTAACTACAATGTTCCATTTGGA CCGCCCTATGTACTTGTTGGGATACCTTGCAAACCAAAGTCGGGTTTATTTGATTGACAAAGAGTTTAAGTAAGTGGACT ATTTGTTTGGATTATTTAGAGTCTCAAATTGCAGTAATTTGAACTATTTTTCTTTCTATTTATTTTCTTCTCAGTGTTAT GGGATACACACTGCTTTTAAGCTTGATTGAATACAAAACACTTGTGATGCGTGGCGATTTAGAAAGGGCCAGTGAAGTTC TACCATCAATCCCTAAAGATCATCATAACAGGTAGGAGCTACCTTGTGTTATATAAGAGAATGATTAATTTATTTTCGTT ATGCCTAAAAAGCTTGTAGGGACAGAATTATGGTTCATAAAATTATGTACTGTGTATCTAGATAATTATCATGGATTAGT ATTCCCTCTCTATTTTATTTTTCTGTTTTGTGCAAGAAAGTCTGGTTTTGATATTTGAACCTGCTGAAAATGGCAGGGCA TCTTTAGTGGCTGATCAGAGAATCTTTTGATACTCATAATTTTGTATGAATAACTATTACATTTATTCTGGACTTTCCAT TCTTCTTATTTGTCCATCAATGGTTTTCGATTGTCATGCTTTTATGATAATCTTGTATGAATAAATATTGCACATTGATT TTCCTGTTACTTGTTTTAGATTTTACAATTTGTTCTATTGATCATATAGTGTTTATTCAAACTTCGGGCTTCAGATCTAA TGTTTTTCCATATGTTTACCATTATCTAATTGAAATTTTGATTTCATGGTAGTGTGGCTCGTTTCCTGGAATCACGAGGG ATGATAGAAGATGCTCTTGAAGTAGCTACTGACCCGGACTATAGATTTGATCTAGCAATACAACTTGGAAGATTAGAGGT TGCAAAGGTGCGTGTTATGTCTACAAGGAGATATTGCATGGCTTGTGAATGTTAACTTTGGTATCTAAATTTTTCATCTT TCTTTATGAATTTGACATGTCATTTTAACTCAATAGTATTCATTCTCTTCTCTTGCAGAGCATTGCAATAGAAGTGCAGA GTGAGTCAAAATGGAAGCAGTTGGGAGAGCTAGCTATGTCTACTGGAAAGGTGTTTTTCTTTATGATTTAAATCTCCAAC TTTAGTGATTCATTTGACACTTAAAAGCTCAATTCCGTTCCTGCATGTCCAAATGTATTAAAGTGAGTGCCTTGATGATG ATATACTGCTGAATATCACCATGTGCACAGGATAGATATAGGCCTTATTGAAGCTTTTGAGATGCAAGACAGCAAGAGGC TACAGTTTAGTTATGGACAAATTAAGATTTTCTTGGTTGCATGTTAGAAGTTGTCTCAGGTGCTTTGAGTTGTAGATGCT GATTCTAGTGTATAGTTAGGATGTTAAGGTTTTCTTCTTTTTCATCATAATGAGTAATGATTATGTAATCTGGTAGACTC AATATAATGATGATTCTATTTGAATATTCTCTTGTTCAATTGTAGCTCACTGTATTTTACATTCTTGCAGTTAGAAATGG CTGAGGAATGTTTAAAGCATGCAAAGGATTTGAGTGGATTATTACTGCTGTATTCTTCTTTAGGCGATGCTGAAGGAATA TCAAATCTTGCAACCCTTGCTAAAGAGCAAGGGAAGAACAATGTCGCATTCCTGTGCTTATTTATGTTGGGTAAACTTGA AGACTGTCTTCAACTATTGGTAGAAAGGTAGTCTTCTAAAGTTGTTCTATTTTTCCATTCTGTATCTTTCTGACATTAGT AGGGAGGGGAATGGACTGATTAGACTTCAATTAGATATAGAACTGAGTTATGCGTTTTGCAGCAATCGGATTCCAGAGGC AGCTTTAATGGCTAGATCATATCTCCCAAGTAAGGTCTCTGAGATTGTGGCAATTTGGAGGAAAGATCTCAACAAGGTAA TTTCTGATTCAGATATATGGTATTATGATGGAACTTCCTGATATTTATTTTATGGGGCATGAGATCATGGAAATTCGGAT CCTCTATTGCCCTAAAAAGAACTGTACTATTCTGCCGTTGAAAATCTAAGAGTAGGCACATTTTCAAGGTCTAAGATCCT TTTTTAGTTGAATTGAAAAAAAGATTCTCATTCCTGATCTGATATTGCGGTGATAGGAACTTCGATTCTGGTTCAGTTGC CTTCTTTTGGGCAGTGTTATATGTTGGTAAATGGGTTGTGGGTTATAGAGAGTCTATTTGAGTGCAGGTTAATCCTAAAG CTGCTGAATCTTTGGCTGATCCTGAGGAATATCCAAATTTGTTTGAAGACTGGCAAGTCGCCCTTGCTGTTGAATCTAAA GCTATAGAAACAAGGTTAGTGTGGAAAATGCTTATTTTCTTGCACTTATATTACTGTTTTGATGGGTTAGTGTTAGTGTT CAGTGTTCACATGTCCAATAAATACTTACTAACTATAAGATCCTTTTTTAGGAATGTTTACCCTCCTGCAGAGCAGTACA TCAGCCATGCTGACAAATCACATGTAACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAAGAGGAGCCTCTTGAG AATGGTGACTCGAATTATGAGGTATAATAAATTTAGGGAAAACACCACATACTAAAGGTTGCAAGAAATTCTCTTAAATT GTTTGTTTTTCTGCAATATAATAAACAATAACCTTAGTAGATTGTTGGTTGAGGTGTTAAAGTGTTTGTTTATTGTATTG TCCTCATGTTGCAGCAAACTAAACAAGATGAAGAGGACTACACAGAGGAACAAGAGGAACAGAATGACTACAATGAGGAA CAGGAGGAACAGAATGGAGAGGAAGGAAGCCAAGAGGAGGCCGTTGTAGTGGATGCGGAATCAACAGATGGTGCAGTACT CGTCAATGGTAACGAGGCTGACGAAGAGTGGGGTACGAATAATGAAGGAGCCCCGTCAGCCTAA
CDS sequence (LotjaGi3g1v0015600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAATCTTTTGAGGTTACTGAGTTACCAGTTAGATCAGCCAAGTTTGTTGCACGCAAACAGTGGGTTGTTGCTGG AGCAGATGATATGTTCATCCGTGTCTATAATTACAACACAATGGATAAAGTCAAAGTATTTGAAGCACATACAGACTACA TTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTGCTATCATCATCTGATGATATGCTCATTAAGCTTTGGGATTGG GAAAAGGGCTGGATTTGTACCCAGATATTTGAAGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGATAC AAACACCTTTGCCAGTGCATCTCTTGATCGAACCATAAAGATCTGGAATCTTGGCTCTCCTGACCCTAATTTTACATTGG ATGCCCATCAGAAAGGAGTGAATTGCGTTGATTACTTTACAGGTGGTGATAAGCCTTATCTAATCACTGGTTCTGATGAT CACACTGCAAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTCTAGATGGTCACACACACAATGTGTCTGCTGT ATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGTACAGTACGCATATGGCACTCGACAACTTACA GGCTTGAGAACACATTGAACTACGGCCTTGAAAGAGTTTGGGCTATTGGATACTTGAAGAGTTCACGTCGGGTTGTGATT GGCTATGACGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGACAACAGTGGGAAAATTAT TTGGGCTAAACATAATGAAATTCAGACTGTCAATATAAAGAGCATAGGAGTAGATGCGGAGGTTGCTGATGGAGAAAGGT TGCCTTTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTACCCCCAAAATTTAAAGCACAATCCTAATGGGAGATTCGTT GTTGTATGTGGAGATGGTGAGTATATTATATACACCGCGTTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTAGAATT TGTCTGGTCTACGGATGGAGAATATGCAGTCAGGGAAAGTACATCCAAGATTAAAATTTTCAGCAAAAATTTCCAGGAAA AGAGGAGTGTCCGACCAACATTTTCAGCTGAACGAATATTTGGTGGTACTTTATTGGCAATGTGCTCAAATGATTTCATC TGCTTTTATGAATGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAAACCTCTATTGGGCTGATAGCGG TGATCTAGTTACAATTGCTAGTGATACATCATTCTACATCCTGAAGTACAACCGTGATGTTGTTTCATCGCATTTAGATA GTGGAAGACCCGTAGATGAGGAAGGTGTTGAAGATGCTTTTGAGCTCCTTCATGAAATGAATGAACGTGTCAGGACTGGC ATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACTACAAT GTTCCATTTGGACCGCCCTATGTACTTGTTGGGATACCTTGCAAACCAAAGTCGGGTTTATTTGATTGACAAAGAGTTTA ATGTTATGGGATACACACTGCTTTTAAGCTTGATTGAATACAAAACACTTGTGATGCGTGGCGATTTAGAAAGGGCCAGT GAAGTTCTACCATCAATCCCTAAAGATCATCATAACAGTGTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAAGATGC TCTTGAAGTAGCTACTGACCCGGACTATAGATTTGATCTAGCAATACAACTTGGAAGATTAGAGGTTGCAAAGAGCATTG CAATAGAAGTGCAGAGTGAGTCAAAATGGAAGCAGTTGGGAGAGCTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAG GAATGTTTAAAGCATGCAAAGGATTTGAGTGGATTATTACTGCTGTATTCTTCTTTAGGCGATGCTGAAGGAATATCAAA TCTTGCAACCCTTGCTAAAGAGCAAGGGAAGAACAATGTCGCATTCCTGTGCTTATTTATGTTGGGTAAACTTGAAGACT GTCTTCAACTATTGGTAGAAAGCAATCGGATTCCAGAGGCAGCTTTAATGGCTAGATCATATCTCCCAAGTAAGGTCTCT GAGATTGTGGCAATTTGGAGGAAAGATCTCAACAAGGTTAATCCTAAAGCTGCTGAATCTTTGGCTGATCCTGAGGAATA TCCAAATTTGTTTGAAGACTGGCAAGTCGCCCTTGCTGTTGAATCTAAAGCTATAGAAACAAGGAATGTTTACCCTCCTG CAGAGCAGTACATCAGCCATGCTGACAAATCACATGTAACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAAGAG GAGCCTCTTGAGAATGGTGACTCGAATTATGAGGAACAAGAGGAACAGAATGACTACAATGAGGAACAGGAGGAACAGAA TGGAGAGGAAGGAAGCCAAGAGGAGGCCGTTGTAGTGGATGCGGAATCAACAGATGGTGCAGTACTCGTCAATGGTAACG AGGCTGACGAAGAGTGGGGTACGAATAATGAAGGAGCCCCGTCAGCCTAA
Protein sequence (LotjaGi3g1v0015600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW EKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDD HTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKSSRRVVI GYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSIGVDAEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFV VVCGDGEYIIYTALAWRNRSFGSALEFVWSTDGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGTLLAMCSNDFI CFYEWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVSSHLDSGRPVDEEGVEDAFELLHEMNERVRTG IWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERAS EVLPSIPKDHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKSIAIEVQSESKWKQLGELAMSTGKLEMAE ECLKHAKDLSGLLLLYSSLGDAEGISNLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVS EIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAIETRNVYPPAEQYISHADKSHVTLVEAFRNMQIEEE EPLENGDSNYEEQEEQNDYNEEQEEQNGEEGSQEEAVVVDAESTDGAVLVNGNEADEEWGTNNEGAPSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 851 | 851 | 0.0 | – | |
| PIRSF | 1 | 839 | 839 | 0.0 | ||
| PANTHER | 1 | 851 | 851 | 0.0 | – | |
| Gene3D | 1 | 252 | 252 | 8.4E-101 | ||
| SMART | 3 | 37 | 35 | 47.0 | ||
| ProSiteProfiles | 5 | 218 | 214 | 45.137 | ||
| SUPERFAMILY | 5 | 249 | 245 | 8.83E-68 | ||
| CDD | 9 | 249 | 241 | 1.92517E-60 | – | |
| SMART | 40 | 79 | 40 | 8.5E-9 | ||
| Pfam | 43 | 79 | 37 | 6.9E-6 | ||
| ProSiteProfiles | 47 | 79 | 33 | 12.747 | ||
| SMART | 83 | 123 | 41 | 5.3E-9 | ||
| Pfam | 86 | 123 | 38 | 2.0E-4 | ||
| ProSiteProfiles | 90 | 132 | 43 | 13.65 | ||
| PRINTS | 110 | 124 | 15 | 1.3E-6 | ||
| SMART | 126 | 167 | 42 | 1.1E-7 | ||
| Pfam | 129 | 167 | 39 | 4.2E-6 | ||
| ProSiteProfiles | 133 | 176 | 44 | 12.514 | ||
| PRINTS | 154 | 168 | 15 | 1.3E-6 | ||
| SMART | 170 | 209 | 40 | 5.1E-12 | ||
| Pfam | 172 | 208 | 37 | 8.0E-9 | ||
| ProSiteProfiles | 177 | 218 | 42 | 15.789 | ||
| SUPERFAMILY | 179 | 446 | 268 | 4.76E-17 | ||
| PRINTS | 196 | 210 | 15 | 1.3E-6 | ||
| Pfam | 271 | 715 | 445 | 1.1E-164 | ||
| Gene3D | 542 | 750 | 209 | 4.8E-87 | – | |
| MobiDBLite | 799 | 869 | 71 | - | – | |
| MobiDBLite | 801 | 831 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Membrane coat | Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. |
Expression pattern of LotjaGi3g1v0015600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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