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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0016200 |
| Transcript ID | LotjaGi3g1v0016200.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G16010.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010; TrEMBL-Plants: tr|G7II50|G7II50_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0016200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1697765..1699631) extracted from Lotus japonicus Gifu genome v1.2.
TCTTATCTAATTGTTTGCAGAAAATGAGATTGTCAAAATGTTTAGCATGCCTAACCCCGAAGAAGAAGAAAACCACAGCA TTCCCATGAGAGGAGGGAGCAGCGTGTTGAGGAGAAGCCCCAACAATGCTCGGGTATTGGATGAGAGATTCATCAGGATT TTGAAAATATTCAAATGGGGACCTGATGCAGAAAAGGCATTGGAAGTGCTGAAGCTGAAGCTTGATGCACGCTTGGTTCG CGAGATTTTGAAGATAGATGTTGAGGTCAATGTGAAGATTCAGTTCTTCAAGTGGGCTGGGAAGAGAAGGAACTTTGAGC ATGATTTGACGACGTACATGGCTTTGATACGGTGTTTGGATGAGCATAAGCTGTTTGGTGAAATGTGGAAGACGATACAG GAGATGGTGAAGAGCGCGTGGTGCGCGATTGGTCCTACTGAGTTGTCTGAGGTTGTGAGAATCTTGGGCAGGGCTAAGAT GGTTAACAAGGCGTTGTCTGTGTTTTATCAGGTGAAGGCTCGAAAGTGCAGACCTACAGCTAGCACTTACAACTCTGTTA TTTTGATGTTGATGCAAGAGGGGCATCTTGAGAAAGTTCACGAGCTGTATAATGAGATGTGCACCGAGGGTCATTGTTAT CCTGACACGGTCACGTATAGTGCGCTTGTGTCAGCATTTGCGAAGCTTAATCGTGACGATTCTGCTATTAGGTTGTTTGA TGAGATGAAGGAGAATGGATTGCAGCCCACAGAGAAAATTTATACGACGTTAATGGGAATATACTTTAAGTTGGGTAGGG TTGATGAAGCTCTGGGCCTAGTCCATGAGATGAGAATGCGGCGGTGTTCCCCGACTGTATTTACCTACACTGAATTGATA AGGGGTTTGGGAAAATCTGGGAGGGTCGAAGACGCGTACATGATATACAAGAATATGCTAAAAGATGGTTGTAAACCTGA TGTTGTTCTGATGAATAATTTGATTAACATTTTGGGTAGATCAGATCATTTAAAAGATGCTCTTCAGCTTTTTGATGAAA TGAAATTGCTGAATTGCACACCCAATGTGGTGACATATAATACCATCATCAAATCCTTATTTGAGTCCAAAGCTCCTCCT TCTGAGGCTTCTTTATGGTTTGAGAGGATGAAAAAAGATGGAGTTTCCCCCAGCTCATTTACTTATTCAATTCTCATTGA TGGTTTCTGCAAAACAAATAGAGTTGAGAAGGCTTTGTTACTTCTTGAGGAGATGGATGAAAAAGGTTTTCCACCTTGTC CTGCTGCCTACTGCAGCCTAATCAATAGCCTTGGAAAAGCAAAGCGCTATGAGGCTGCAAATGAACTATTCCAGGAATTA AAAGAGAACTGTGGACGTTCAAGTGCTCGTGTGTATGCTGTAATGATTAAGCATTTTGGAAAGTGTGGGCGGTTTAATGA AGCTGTCAATCTTTTTAATGAGATGAAAAAACTTGGATGCATCCCTGATGTCTATGCTTATAATGCTCTCATGACTGGGA TGGTAAGGGAAGACATGATGGATGCCGCTTTTTCCTTGTTTAGAACCATGGAAGAAAATGGCTGTACCCCAGATATAAAT TCTCATAACATTATCTTAAACGGCTTAGCTAGGACTGGTGGTCCAAAGCGTGCTATGGAAATGTTTACAAAAATGAAGAG TTCTGCTATTAAGCCAGATGCGGTTTCTTACAACACAATTCTTGGTTGTCTTAGCCGAGCAGGTCAGTTTGAAGAGGCTG CAAAACTTATGAAGGAGATGAGTTCAAAGGGATTCCAGTATGATCTCATCACCTACTCTTCAATACTTGAGGCAGTTGGT AAGGTTGATGAAGCATGAGAATCATGA
CDS sequence (LotjaGi3g1v0016200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAGCATGCCTAACCCCGAAGAAGAAGAAAACCACAGCATTCCCATGAGAGGAGGGAGCAGCGTGTTGAGGAGAAG CCCCAACAATGCTCGGGTATTGGATGAGAGATTCATCAGGATTTTGAAAATATTCAAATGGGGACCTGATGCAGAAAAGG CATTGGAAGTGCTGAAGCTGAAGCTTGATGCACGCTTGGTTCGCGAGATTTTGAAGATAGATGTTGAGGTCAATGTGAAG ATTCAGTTCTTCAAGTGGGCTGGGAAGAGAAGGAACTTTGAGCATGATTTGACGACGTACATGGCTTTGATACGGTGTTT GGATGAGCATAAGCTGTTTGGTGAAATGTGGAAGACGATACAGGAGATGGTGAAGAGCGCGTGGTGCGCGATTGGTCCTA CTGAGTTGTCTGAGGTTGTGAGAATCTTGGGCAGGGCTAAGATGGTTAACAAGGCGTTGTCTGTGTTTTATCAGGTGAAG GCTCGAAAGTGCAGACCTACAGCTAGCACTTACAACTCTGTTATTTTGATGTTGATGCAAGAGGGGCATCTTGAGCTTAA TCGTGACGATTCTGCTATTAGGTTGTTTGATGAGATGAAGGAGAATGGATTGCAGCCCACAGAGAAAATTTATACGACGT TAATGGGAATATACTTTAAGTTGGGTAGGGTTGATGAAGCTCTGGGCCTAGTCCATGAGATGAGAATGCGGCGGTGTTCC CCGACTGTATTTACCTACACTGAATTGATAAGGGGTTTGGGAAAATCTGGGAGGGTCGAAGACGCGTACATGATATACAA GAATATGCTAAAAGATGGTTGTAAACCTGATGTTGTTCTGATGAATAATTTGATTAACATTTTGGGTAGATCAGATCATT TAAAAGATGCTCTTCAGCTTTTTGATGAAATGAAATTGCTGAATTGCACACCCAATGTGGTGACATATAATACCATCATC AAATCCTTATTTGAGTCCAAAGCTCCTCCTTCTGAGGCTTCTTTATGGTTTGAGAGGATGAAAAAAGATGGAGTTTCCCC CAGCTCATTTACTTATTCAATTCTCATTGATGGTTTCTGCAAAACAAATAGAGTTGAGAAGGCTTTGTTACTTCTTGAGG AGATGGATGAAAAAGGTTTTCCACCTTGTCCTGCTGCCTACTGCAGCCTAATCAATAGCCTTGGAAAAGCAAAGCGCTAT GAGGCTGCAAATGAACTATTCCAGGAATTAAAAGAGAACTGTGGACGTTCAAGTGCTCGTGTGTATGCTGTAATGATTAA GCATTTTGGAAAGTGTGGGCGGTTTAATGAAGCTGTCAATCTTTTTAATGAGATGAAAAAACTTGGATGCATCCCTGATG TCTATGCTTATAATGCTCTCATGACTGGGATGGTAAGGGAAGACATGATGGATGCCGCTTTTTCCTTGTTTAGAACCATG GAAGAAAATGGCTGTACCCCAGATATAAATTCTCATAACATTATCTTAAACGGCTTAGCTAGGACTGGTGGTCCAAAGCG TGCTATGGAAATGTTTACAAAAATGAAGAGTTCTGCTATTAAGCCAGATGCGGTTTCTTACAACACAATTCTTGGTTGTC TTAGCCGAGCAGGTCAGTTTGAAGAGGCTGCAAAACTTATGAAGGAGATGAGTTCAAAGGGATTCCAGTATGATCTCATC ACCTACTCTTCAATACTTGAGGCAGTTGGTAAGGTTGATGAAGCATGA
Protein sequence (LotjaGi3g1v0016200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSMPNPEEEENHSIPMRGGSSVLRRSPNNARVLDERFIRILKIFKWGPDAEKALEVLKLKLDARLVREILKIDVEVNVK IQFFKWAGKRRNFEHDLTTYMALIRCLDEHKLFGEMWKTIQEMVKSAWCAIGPTELSEVVRILGRAKMVNKALSVFYQVK ARKCRPTASTYNSVILMLMQEGHLELNRDDSAIRLFDEMKENGLQPTEKIYTTLMGIYFKLGRVDEALGLVHEMRMRRCS PTVFTYTELIRGLGKSGRVEDAYMIYKNMLKDGCKPDVVLMNNLINILGRSDHLKDALQLFDEMKLLNCTPNVVTYNTII KSLFESKAPPSEASLWFERMKKDGVSPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRY EAANELFQELKENCGRSSARVYAVMIKHFGKCGRFNEAVNLFNEMKKLGCIPDVYAYNALMTGMVREDMMDAAFSLFRTM EENGCTPDINSHNIILNGLARTGGPKRAMEMFTKMKSSAIKPDAVSYNTILGCLSRAGQFEEAAKLMKEMSSKGFQYDLI TYSSILEAVGKVDEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| Gene3D | 25 | 187 | 163 | 2.4E-14 | ||
| PANTHER | 89 | 185 | 97 | 2.0E-107 | – | |
| ProSiteProfiles | 96 | 130 | 35 | 7.859 | ||
| ProSiteProfiles | 132 | 166 | 35 | 7.388 | ||
| TIGRFAM | 139 | 167 | 29 | 8.4E-4 | ||
| Pfam | 147 | 177 | 31 | 0.0036 | ||
| ProSiteProfiles | 167 | 206 | 40 | 9.657 | ||
| PANTHER | 187 | 326 | 140 | 2.0E-107 | – | |
| Gene3D | 188 | 292 | 105 | 2.1E-30 | ||
| ProSiteProfiles | 207 | 241 | 35 | 10.885 | ||
| Pfam | 209 | 254 | 46 | 1.3E-11 | ||
| TIGRFAM | 210 | 243 | 34 | 3.4E-8 | ||
| ProSiteProfiles | 242 | 276 | 35 | 12.88 | ||
| TIGRFAM | 244 | 278 | 35 | 3.0E-10 | ||
| SUPERFAMILY | 257 | 483 | 227 | 8.63E-9 | – | |
| Pfam | 272 | 305 | 34 | 1.6E-6 | ||
| ProSiteProfiles | 277 | 311 | 35 | 10.698 | ||
| TIGRFAM | 282 | 313 | 32 | 1.8E-5 | ||
| Gene3D | 293 | 425 | 133 | 3.9E-36 | ||
| Pfam | 311 | 361 | 51 | 2.7E-17 | ||
| ProSiteProfiles | 312 | 347 | 36 | 10.918 | ||
| TIGRFAM | 314 | 348 | 35 | 3.6E-4 | ||
| PANTHER | 326 | 490 | 165 | 2.0E-107 | – | |
| ProSiteProfiles | 348 | 382 | 35 | 13.537 | ||
| TIGRFAM | 350 | 382 | 33 | 1.2E-9 | ||
| ProSiteProfiles | 383 | 413 | 31 | 8.484 | ||
| Pfam | 386 | 413 | 28 | 3.6E-4 | ||
| TIGRFAM | 386 | 413 | 28 | 2.8E-5 | ||
| ProSiteProfiles | 418 | 452 | 35 | 12.342 | ||
| TIGRFAM | 421 | 454 | 34 | 3.2E-9 | ||
| Pfam | 421 | 450 | 30 | 1.8E-6 | ||
| Gene3D | 426 | 575 | 150 | 1.1E-42 | ||
| Pfam | 452 | 501 | 50 | 5.8E-15 | ||
| ProSiteProfiles | 453 | 487 | 35 | 12.408 | ||
| TIGRFAM | 455 | 489 | 35 | 6.7E-9 | ||
| PANTHER | 484 | 568 | 85 | 2.0E-107 | – | |
| ProSiteProfiles | 488 | 522 | 35 | 11.038 | ||
| TIGRFAM | 491 | 524 | 34 | 1.5E-4 | ||
| Pfam | 522 | 569 | 48 | 2.8E-12 | ||
| ProSiteProfiles | 523 | 557 | 35 | 12.222 | ||
| TIGRFAM | 525 | 558 | 34 | 4.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0016200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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