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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0016200 |
| Transcript ID | LotjaGi3g1v0016200.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT3G16010.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010; TrEMBL-Plants: tr|G7II50|G7II50_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0016200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1697765..1699805) extracted from Lotus japonicus Gifu genome v1.2.
CCCTCAGAACCGCGAAAAATGCTTCCTGGATCCAGTGCTACAAGAAGAAGCATATCAACTTCCCCTCTTCTCTCTCAGAG ATTAAAGCAAACAGGTGGGGTGCATCCATCGTTTCACCGTTTATCATTGATTCTGCAAATGAAGTTTGATTTGATTGTGT TTAACTTCATAATATCTTATCTAATTGTTTGCAGAAAATGAGATTGTCAAAATGTTTAGCATGCCTAACCCCGAAGAAGA AGAAAACCACAGCATTCCCATGAGAGGAGGGAGCAGCGTGTTGAGGAGAAGCCCCAACAATGCTCGGGTATTGGATGAGA GATTCATCAGGATTTTGAAAATATTCAAATGGGGACCTGATGCAGAAAAGGCATTGGAAGTGCTGAAGCTGAAGCTTGAT GCACGCTTGGTTCGCGAGATTTTGAAGATAGATGTTGAGGTCAATGTGAAGATTCAGTTCTTCAAGTGGGCTGGGAAGAG AAGGAACTTTGAGCATGATTTGACGACGTACATGGCTTTGATACGGTGTTTGGATGAGCATAAGCTGTTTGGTGAAATGT GGAAGACGATACAGGAGATGGTGAAGAGCGCGTGGTGCGCGATTGGTCCTACTGAGTTGTCTGAGGTTGTGAGAATCTTG GGCAGGGCTAAGATGGTTAACAAGGCGTTGTCTGTGTTTTATCAGGTGAAGGCTCGAAAGTGCAGACCTACAGCTAGCAC TTACAACTCTGTTATTTTGATGTTGATGCAAGAGGGGCATCTTGAGAAAGTTCACGAGCTGTATAATGAGATGTGCACCG AGGGTCATTGTTATCCTGACACGGTCACGTATAGTGCGCTTGTGTCAGCATTTGCGAAGCTTAATCGTGACGATTCTGCT ATTAGGTTGTTTGATGAGATGAAGGAGAATGGATTGCAGCCCACAGAGAAAATTTATACGACGTTAATGGGAATATACTT TAAGTTGGGTAGGGTTGATGAAGCTCTGGGCCTAGTCCATGAGATGAGAATGCGGCGGTGTTCCCCGACTGTATTTACCT ACACTGAATTGATAAGGGGTTTGGGAAAATCTGGGAGGGTCGAAGACGCGTACATGATATACAAGAATATGCTAAAAGAT GGTTGTAAACCTGATGTTGTTCTGATGAATAATTTGATTAACATTTTGGGTAGATCAGATCATTTAAAAGATGCTCTTCA GCTTTTTGATGAAATGAAATTGCTGAATTGCACACCCAATGTGGTGACATATAATACCATCATCAAATCCTTATTTGAGT CCAAAGCTCCTCCTTCTGAGGCTTCTTTATGGTTTGAGAGGATGAAAAAAGATGGAGTTTCCCCCAGCTCATTTACTTAT TCAATTCTCATTGATGGTTTCTGCAAAACAAATAGAGTTGAGAAGGCTTTGTTACTTCTTGAGGAGATGGATGAAAAAGG TTTTCCACCTTGTCCTGCTGCCTACTGCAGCCTAATCAATAGCCTTGGAAAAGCAAAGCGCTATGAGGCTGCAAATGAAC TATTCCAGGAATTAAAAGAGAACTGTGGACGTTCAAGTGCTCGTGTGTATGCTGTAATGATTAAGCATTTTGGAAAGTGT GGGCGGTTTAATGAAGCTGTCAATCTTTTTAATGAGATGAAAAAACTTGGATGCATCCCTGATGTCTATGCTTATAATGC TCTCATGACTGGGATGGTAAGGGAAGACATGATGGATGCCGCTTTTTCCTTGTTTAGAACCATGGAAGAAAATGGCTGTA CCCCAGATATAAATTCTCATAACATTATCTTAAACGGCTTAGCTAGGACTGGTGGTCCAAAGCGTGCTATGGAAATGTTT ACAAAAATGAAGAGTTCTGCTATTAAGCCAGATGCGGTTTCTTACAACACAATTCTTGGTTGTCTTAGCCGAGCAGGTCA GTTTGAAGAGGCTGCAAAACTTATGAAGGAGATGAGTTCAAAGGGATTCCAGTATGATCTCATCACCTACTCTTCAATAC TTGAGGCAGTTGGTAAGGTTGATGAAGCATGAGAATCATGA
CDS sequence (LotjaGi3g1v0016200.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCTGGATCCAGTGCTACAAGAAGAAGCATATCAACTTCCCCTCTTCTCTCTCAGAGATTAAAGCAAACAGAAAA TGAGATTGTCAAAATGTTTAGCATGCCTAACCCCGAAGAAGAAGAAAACCACAGCATTCCCATGAGAGGAGGGAGCAGCG TGTTGAGGAGAAGCCCCAACAATGCTCGGGTATTGGATGAGAGATTCATCAGGATTTTGAAAATATTCAAATGGGGACCT GATGCAGAAAAGGCATTGGAAGTGCTGAAGCTGAAGCTTGATGCACGCTTGGTTCGCGAGATTTTGAAGATAGATGTTGA GGTCAATGTGAAGATTCAGTTCTTCAAGTGGGCTGGGAAGAGAAGGAACTTTGAGCATGATTTGACGACGTACATGGCTT TGATACGGTGTTTGGATGAGCATAAGCTGTTTGGTGAAATGTGGAAGACGATACAGGAGATGGTGAAGAGCGCGTGGTGC GCGATTGGTCCTACTGAGTTGTCTGAGGTTGTGAGAATCTTGGGCAGGGCTAAGATGGTTAACAAGGCGTTGTCTGTGTT TTATCAGGTGAAGGCTCGAAAGTGCAGACCTACAGCTAGCACTTACAACTCTGTTATTTTGATGTTGATGCAAGAGGGGC ATCTTGAGCTTAATCGTGACGATTCTGCTATTAGGTTGTTTGATGAGATGAAGGAGAATGGATTGCAGCCCACAGAGAAA ATTTATACGACGTTAATGGGAATATACTTTAAGTTGGGTAGGGTTGATGAAGCTCTGGGCCTAGTCCATGAGATGAGAAT GCGGCGGTGTTCCCCGACTGTATTTACCTACACTGAATTGATAAGGGGTTTGGGAAAATCTGGGAGGGTCGAAGACGCGT ACATGATATACAAGAATATGCTAAAAGATGGTTGTAAACCTGATGTTGTTCTGATGAATAATTTGATTAACATTTTGGGT AGATCAGATCATTTAAAAGATGCTCTTCAGCTTTTTGATGAAATGAAATTGCTGAATTGCACACCCAATGTGGTGACATA TAATACCATCATCAAATCCTTATTTGAGTCCAAAGCTCCTCCTTCTGAGGCTTCTTTATGGTTTGAGAGGATGAAAAAAG ATGGAGTTTCCCCCAGCTCATTTACTTATTCAATTCTCATTGATGGTTTCTGCAAAACAAATAGAGTTGAGAAGGCTTTG TTACTTCTTGAGGAGATGGATGAAAAAGGTTTTCCACCTTGTCCTGCTGCCTACTGCAGCCTAATCAATAGCCTTGGAAA AGCAAAGCGCTATGAGGCTGCAAATGAACTATTCCAGGAATTAAAAGAGAACTGTGGACGTTCAAGTGCTCGTGTGTATG CTGTAATGATTAAGCATTTTGGAAAGTGTGGGCGGTTTAATGAAGCTGTCAATCTTTTTAATGAGATGAAAAAACTTGGA TGCATCCCTGATGTCTATGCTTATAATGCTCTCATGACTGGGATGGTAAGGGAAGACATGATGGATGCCGCTTTTTCCTT GTTTAGAACCATGGAAGAAAATGGCTGTACCCCAGATATAAATTCTCATAACATTATCTTAAACGGCTTAGCTAGGACTG GTGGTCCAAAGCGTGCTATGGAAATGTTTACAAAAATGAAGAGTTCTGCTATTAAGCCAGATGCGGTTTCTTACAACACA ATTCTTGGTTGTCTTAGCCGAGCAGGTCAGTTTGAAGAGGCTGCAAAACTTATGAAGGAGATGAGTTCAAAGGGATTCCA GTATGATCTCATCACCTACTCTTCAATACTTGAGGCAGTTGGTAAGGTTGATGAAGCATGA
Protein sequence (LotjaGi3g1v0016200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPGSSATRRSISTSPLLSQRLKQTENEIVKMFSMPNPEEEENHSIPMRGGSSVLRRSPNNARVLDERFIRILKIFKWGP DAEKALEVLKLKLDARLVREILKIDVEVNVKIQFFKWAGKRRNFEHDLTTYMALIRCLDEHKLFGEMWKTIQEMVKSAWC AIGPTELSEVVRILGRAKMVNKALSVFYQVKARKCRPTASTYNSVILMLMQEGHLELNRDDSAIRLFDEMKENGLQPTEK IYTTLMGIYFKLGRVDEALGLVHEMRMRRCSPTVFTYTELIRGLGKSGRVEDAYMIYKNMLKDGCKPDVVLMNNLINILG RSDHLKDALQLFDEMKLLNCTPNVVTYNTIIKSLFESKAPPSEASLWFERMKKDGVSPSSFTYSILIDGFCKTNRVEKAL LLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGRSSARVYAVMIKHFGKCGRFNEAVNLFNEMKKLG CIPDVYAYNALMTGMVREDMMDAAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKRAMEMFTKMKSSAIKPDAVSYNT ILGCLSRAGQFEEAAKLMKEMSSKGFQYDLITYSSILEAVGKVDEA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 35 | 54 | 20 | - | – | |
| Gene3D | 112 | 324 | 213 | 5.9E-41 | ||
| PANTHER | 120 | 216 | 97 | 3.0E-107 | – | |
| ProSiteProfiles | 127 | 161 | 35 | 7.859 | ||
| ProSiteProfiles | 163 | 197 | 35 | 7.388 | ||
| TIGRFAM | 170 | 198 | 29 | 9.0E-4 | ||
| Pfam | 178 | 208 | 31 | 0.0038 | ||
| ProSiteProfiles | 198 | 237 | 40 | 9.657 | ||
| PANTHER | 217 | 357 | 141 | 3.0E-107 | – | |
| ProSiteProfiles | 238 | 272 | 35 | 10.885 | ||
| Pfam | 240 | 285 | 46 | 1.4E-11 | ||
| TIGRFAM | 241 | 274 | 34 | 3.7E-8 | ||
| ProSiteProfiles | 273 | 307 | 35 | 12.88 | ||
| TIGRFAM | 275 | 309 | 35 | 3.2E-10 | ||
| SUPERFAMILY | 288 | 514 | 227 | 7.85E-9 | – | |
| Pfam | 303 | 336 | 34 | 1.7E-6 | ||
| ProSiteProfiles | 308 | 342 | 35 | 10.698 | ||
| TIGRFAM | 313 | 344 | 32 | 1.9E-5 | ||
| Gene3D | 325 | 455 | 131 | 9.4E-36 | ||
| Pfam | 342 | 392 | 51 | 2.9E-17 | ||
| ProSiteProfiles | 343 | 378 | 36 | 10.918 | ||
| TIGRFAM | 345 | 379 | 35 | 3.8E-4 | ||
| PANTHER | 362 | 521 | 160 | 3.0E-107 | – | |
| ProSiteProfiles | 379 | 413 | 35 | 13.537 | ||
| TIGRFAM | 381 | 413 | 33 | 1.2E-9 | ||
| ProSiteProfiles | 414 | 444 | 31 | 8.484 | ||
| Pfam | 417 | 444 | 28 | 3.8E-4 | ||
| TIGRFAM | 417 | 444 | 28 | 3.0E-5 | ||
| ProSiteProfiles | 449 | 483 | 35 | 12.342 | ||
| TIGRFAM | 452 | 485 | 34 | 3.4E-9 | ||
| Pfam | 452 | 481 | 30 | 1.9E-6 | ||
| Gene3D | 456 | 606 | 151 | 1.2E-42 | ||
| Pfam | 483 | 532 | 50 | 6.3E-15 | ||
| ProSiteProfiles | 484 | 518 | 35 | 12.408 | ||
| TIGRFAM | 486 | 520 | 35 | 7.2E-9 | ||
| PANTHER | 515 | 599 | 85 | 3.0E-107 | – | |
| ProSiteProfiles | 519 | 553 | 35 | 11.038 | ||
| TIGRFAM | 522 | 555 | 34 | 1.6E-4 | ||
| Pfam | 553 | 600 | 48 | 3.0E-12 | ||
| ProSiteProfiles | 554 | 588 | 35 | 12.222 | ||
| TIGRFAM | 556 | 589 | 34 | 4.5E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0016200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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