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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0019600 |
| Transcript ID | LotjaGi3g1v0019600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosynthetic NDH subcomplex B 3; TAIR: AT3G16250.1 NDH-dependent cyclic electron flow 1; Swiss-Prot: sp|Q9LU21|PNSB3_ARATH Photosynthetic NDH subunit of subcomplex B 3, chloroplastic; TrEMBL-Plants: tr|I3SQH3|I3SQH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0019600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2038382..2041000) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGTGTATCAAGATAAGATGATCACAAGAACAGAACAACCACAAGTGACAGACACACTTCACTGAGCTCAAATTCCAT GCAAAAAATCCTCAGCACAACACTCATCAACAACAACCTCTGAAATTTCCACAAATGTCACTCCTTCAACTCCAACTAAC CTCTCATGCACTGTGTTCTCTCCCTTCCTTCTCCAATAGCTTCAGACCCAACAGAACCTTTCATTGCTCTAAGCGTCTCA ATTTTGCTACAACCAATATCAGAGCCGTTGGCACTGTCCCTGAGAGGGACTTAGAGACCACTGCAACCGACGAGCCACCG TCTGTTGGCTTCGCATTCGTCAGTGTAAGTGCACATTTGAAAATTCTTCTACAATTGATTCTGAAGTCAAAACCAATTTT GAGAAGAAAAAAATGTGAGTAGCTTATGATTTCAGAATCGATTTCGAGTAGTAAAAAGTTGATTCAAACAACAGTGCTAC ACATGTTTTAATTAATTCCACATTTGGTTTCACATTTTTTATTTCTAATATGAATCTCTAATGATGTTTTTGTGGTGTCT GTTCTGTGTTTGTTTAGTCTGTGTTGCTACCAGATGGAACTCCAGATATACACTATCGCTCTGCTACTGGCGGTCAGAAG CTTAGGGACATAATGCTGGATTCCAATATTGAGCTCTATGGCCCCTATGTAAAATTTACCTCACCAAACTTATATTTTTT TTTTAATGAATAATTGCATCTTGTTATTCATTTCCTCTGTACTGATAAATGGGGTAACTACTATTTTATTGTATGAATCA CTTTTCTGTCATTTTGTTCTTTTTGCAGGGTAAGCTTTTTTCAAATTGTGCAGGGGGTGGAACTTGTGCTACCTGTATGG TAGAGGTGAGGTGTAATTAAATAACCTTTACTGAATGGCAAATTTTGTTTCAGAAATTAAGACACATTTTTATAGTAATA AATTGTTTTATATATATAGCTTGAAGGTAGGTGGATCAAGTAAACTTGCTGTACAATTGTAATTGTGTTTTGCAATTGCT GTTAGGTTCTTGAAGGCACAGAGCTTCTTAATCCTCGTACTGATAAAGAGAAGGAAAAACTAAAAAGGGTAATAGCACAT CTGGATCAGCTTTTCGTTTCTCATAATCAATTCTACCATCCATAAGCTATATACATAGTGCATGTTTAGAAATCTTTCTA CAATCCATTCTAAGGTCAAAATCAATTATGTCGAGAAGCCTCAAATTATTTTTTGCTTTAAAATCAATTAGAGTGATTTC TAAACATAGACTAATGGCTGAATATTGACTTGATGATCAGATTGAATTTTTCTTCTACCATGATAATTGTCTGTGACTAG CAAAATTGCAGTTTTTATTATCTGGGTCTTTTCTTTTTTTTCCCAGAAACCAAAGAATTGGAGATTAGCATGTCAAACCA CTGTTGGTGAACCAGATTCAACTGGAGTGGTTAGTGACTCTTGACTCTTGAGCTTTACTCTGAGTTCATATGGAGTAGAA AGGCAATTCACTATGTTTTGCCAAATGAACTCCTGATATTTTGTGTTAACTTTATATGTATGTCGGTTTTTCATTCCATT TTGATGTAGGTTGTGATTCAACAACTACCAGAGTGGAAAGGGCATGAATGGAAATATGAAAAGCCTGAAGAGTCAGCAGA AGAGTCTTTGTAAATTGTAATGCTTGGTTGACTAAAATATAAAAGGAAAAAAATCTTTATAAGGCATTTTTGTTTCTGCT TTATTGCAAATCTTGAAGAAAATCAAGGAAACCTGTAATTAAGAATTATAGATGCCATACTGAGGGATTTGAACGGCAAA AAAATAGATATAGCAAAGCTAGGTGTATTCTGTTTGTACCTTTTTTCTTTCAGAGGCAGTAATAGGCTGTTTGATTTCAG AAAATAGTATCTATTTTCTTTTTATAAAACTATCACTTTATTTAATTGATTTTTTAGACAACTTGTCCAGTTGTCCTTAT TAATCCACATAGCTCAATGAATTTGATCAGGTGAGCATAAGGGTCTTCATGATCTAAACATGAAAAAATGTTAGCATAAA CAAATTGAACAAGTCTTGTGTTCACCACTAGTCTTCTGTCACTTCCATGTTTTGGCAACATGAGTGCTAGCCTTAGGGCT TTAATGAACAAAACCCCTTGGAGGTGGACTTCTCCTATTGTTGTTGCCACCATTTTTGTTGTTTCCATTATTGTTGTTGT TGTTGTTGTTGTTATTATCTCCATTGTAAGCCATGATTTCCTCTTGTTTAGGAGACAGAAGAATTTGAAGTTGAAGTTTC CTATCGTTGGCTAGTTGCTTTTTCTTCCTTGCTTTGCTATTGGCTCTCCAAGCGATCTCTTCAACCTCAGGGTCAAATAA CAATTTATCATTATGAGCTGGAACATTACCTCACATGTACAGAGCTAACAACACTAGCAAGAGTTAAGCAGGAAGATAAA TGCAAAATCAAAAGAAAAACTATTTTGTTGGTTTTTTTAAATGGACCTACTACTCTTTTGAAGGACTAAAATCTGTTATA GTAAAATAATTTGTTGGGTTTTCGCATTTCACATAGATTTGTGTCGTACTATGTTGTTC
CDS sequence (LotjaGi3g1v0019600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACTCCTTCAACTCCAACTAACCTCTCATGCACTGTGTTCTCTCCCTTCCTTCTCCAATAGCTTCAGACCCAACAG AACCTTTCATTGCTCTAAGCGTCTCAATTTTGCTACAACCAATATCAGAGCCGTTGGCACTGTCCCTGAGAGGGACTTAG AGACCACTGCAACCGACGAGCCACCGTCTGTTGGCTTCGCATTCGTCAGTTCTGTGTTGCTACCAGATGGAACTCCAGAT ATACACTATCGCTCTGCTACTGGCGGTCAGAAGCTTAGGGACATAATGCTGGATTCCAATATTGAGCTCTATGGCCCCTA TGGTAAGCTTTTTTCAAATTGTGCAGGGGGTGGAACTTGTGCTACCTGTATGGTAGAGGTTCTTGAAGGCACAGAGCTTC TTAATCCTCGTACTGATAAAGAGAAGGAAAAACTAAAAAGGAAACCAAAGAATTGGAGATTAGCATGTCAAACCACTGTT GGTGAACCAGATTCAACTGGAGTGGTTGTGATTCAACAACTACCAGAGTGGAAAGGGCATGAATGGAAATATGAAAAGCC TGAAGAGTCAGCAGAAGAGTCTTTGTAA
Protein sequence (LotjaGi3g1v0019600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLLQLQLTSHALCSLPSFSNSFRPNRTFHCSKRLNFATTNIRAVGTVPERDLETTATDEPPSVGFAFVSSVLLPDGTPD IHYRSATGGQKLRDIMLDSNIELYGPYGKLFSNCAGGGTCATCMVEVLEGTELLNPRTDKEKEKLKRKPKNWRLACQTTV GEPDSTGVVVIQQLPEWKGHEWKYEKPEESAEESL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 5 | 187 | 183 | 1.2E-81 | – | |
| PANTHER | 5 | 187 | 183 | 1.2E-81 | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 195 | 173 | - | – | |
| Gene3D | 76 | 182 | 107 | 2.2E-20 | ||
| SUPERFAMILY | 83 | 169 | 87 | 1.11E-16 | ||
| CDD | 89 | 170 | 82 | 6.15273E-9 | ||
| Pfam | 113 | 160 | 48 | 7.0E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. |
Expression pattern of LotjaGi3g1v0019600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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