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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0022000 |
| Transcript ID | LotjaGi3g1v0022000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I P700 chlorophyll a apoprotein A2; TAIR: ATCG00340.1 Photosystem I, PsaA/PsaB protein (ChrC); Swiss-Prot: sp|P58385|PSAB_LOTJA Photosystem I P700 chlorophyll a apoprotein A2; TrEMBL-Plants: tr|A0A178W009|A0A178W009_ARATH PSAB; Found in the gene: LotjaGi3g1v0022000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2381843..2383871) extracted from Lotus japonicus Gifu genome v1.2.
ACTTGCAGCCAAATGATTCTTCACCTCTCGCTCAAATTAATCTAGATTTGTAGTTTTTCACCTTCTCTTTTTCTCTCTTT TATGATATCATTTCTCTGATCATTTTGATGGACTCAAAATAGATAGTGCCGTTCAGAGAGATAGTAATCATCCTGATATG CAATTATCTTTTATTTATTCAAGTCGATCCAATTCAATTTGTTCTTTAAAGGAAAATTGATATGAATAATTAAGCAAGAG TAATTGTCTGGCAGTATTCAAAACATTTAAGTATGAAAGAAAAAATTTAAGATTGTTACCGAAATGGAAACCTAGCGTTT CATGGTTTAAAAATGCCGAATCCCGCCTCAATCATCATTTGTCAGGACTCTTTGGAGTTAGTTCCTTGGCTTGGACAGGA CATTTAGTCCATGTCGCTATTCCGGGATCTAGGGGAGAATACGTTCGATGGAATAATTTTTTAAGTATATTGCCTCACCC CCAAGGATTAGGTCCACTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAACCCCGATTCCAGTAGTCATTTATTTGGTA CCTCCCAAGGGGCTGGAACTGCTATTTTAACACTTCTCGGGGGATTCCATCCACAAACGCAAAGTTTATGGCTAACCGAT ATGGCACACCATCATTTAGCTATTGCCATTCTGTTTCTACTTGCCGGTCATATGTATAGAACTAACTTCGGTATTGGGCA CAGTATAAAGGATCTTTTAGAAGCACATATTCCTCCCGGGGGTAGATTAGGGCGTGGACATAAGGGTCTTTATGACACAA TCAATAATTCAATTCATTTTCAATTAGGCCTTGCCTTAGCCTCTTTAGGGGTGATTACTTCTTTGGTAGCTCAACACATG TATTCTTTACCCGCTTATGCGTTTATAGCGCAAGACTATACTACTCAAGCTGCGTTATATACTCATCATCAATACATCGC AGGATTCATTATGACAGGGGCTTTTGCTCACGGAGCTATCTTTTTTATTCGAGATTACAATCCTGAGCAGAATGAAGATA ATGTATTGGCAAGAATGTTAGATCACAAGGAAGCTATCATATCCCATTTAAGTTGGGCCAGTCTATTTCTGGGGTTCCAT ACTTTGGGACTTTATGTCCATAATGATGTTATGCTTGCTTTTGGTACTCCGGAGAAACAAATCTTGATTGAACCCATATT TGCCCAATGGATACAATCTGCTCATGGGAAAACTTCATATGGGTTCGATGTACTTTTATCTTCAACGAATAGTCCGGCGT TCAATGCGGGGCGAAGCATATGGTTGCCTGGTTGGTTAAACGCTATTAATGAGAATAGTAATTCTCTATTCTTAACAATA GGACCCGGCGACTTCTTGGTTCATCATGCTATTGCTCTTGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTT GGATGCGCGTGGTTCCAAATTAATGCCGGATAAAAAAGATTTTGGTTATAGTTTTCCTTGCGATGGTCCGGGACGGGGCG GTACTTGTGATATTTCGGCCTGGGACGCTTTTTATTTGGCAGTTTTCTGGATGTTAAATACGATTGGATGGGTTACTTTT TATTGGCATTGGAAGCACATTACACTGTGGCAGGGTAATGTTTCACAGTTTAATGAATCTTCGACCTATTTGATGGGATG GTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAACCCTTTTGGTATGAATAGTTTATCAGTCT GGGCGTGGATGTTTTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGCGGATATTGGCAG GAATTAATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCTAATTTGATTCGATGGAGAGATAAGCCAGTTGC TCTTTCCATTGTGCAAGCAAGGTTGGTTGGAATAGCCCACTTTTCGGTAGGTTATATATTTACTTATGCGGCTTTCTTGA TTGCCTCTACATCGGGTAAATTTGGTTAA
CDS sequence (LotjaGi3g1v0022000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACACCATCATTTAGCTATTGCCATTCTGTTTCTACTTGCCGGTCATATGTATAGAACTAACTTCGGTATTGGGCA CAGTATAAAGGATCTTTTAGAAGCACATATTCCTCCCGGGGGTAGATTAGGGCGTGGACATAAGGGTCTTTATGACACAA TCAATAATTCAATTCATTTTCAATTAGGCCTTGCCTTAGCCTCTTTAGGGGTGATTACTTCTTTGGTAGCTCAACACATG TATTCTTTACCCGCTTATGCGTTTATAGCGCAAGACTATACTACTCAAGCTGCGTTATATACTCATCATCAATACATCGC AGGATTCATTATGACAGGGGCTTTTGCTCACGGAGCTATCTTTTTTATTCGAGATTACAATCCTGAGCAGAATGAAGATA ATGTATTGGCAAGAATGTTAGATCACAAGGAAGCTATCATATCCCATTTAAGTTGGGCCAGTCTATTTCTGGGGTTCCAT ACTTTGGGACTTTATGTCCATAATGATGTTATGCTTGCTTTTGGTACTCCGGAGAAACAAATCTTGATTGAACCCATATT TGCCCAATGGATACAATCTGCTCATGGGAAAACTTCATATGGGTTCGATGTACTTTTATCTTCAACGAATAGTCCGGCGT TCAATGCGGGGCGAAGCATATGGTTGCCTGGTTGGTTAAACGCTATTAATGAGAATAGTAATTCTCTATTCTTAACAATA GGACCCGGCGACTTCTTGGTTCATCATGCTATTGCTCTTGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTT GGATGCGCGTGGTTCCAAATTAATGCCGGATAAAAAAGATTTTGGTTATAGTTTTCCTTGCGATGGTCCGGGACGGGGCG GTACTTGTGATATTTCGGCCTGGGACGCTTTTTATTTGGCAGTTTTCTGGATGTTAAATACGATTGGATGGGTTACTTTT TATTGGCATTGGAAGCACATTACACTGTGGCAGGGTAATGTTTCACAGTTTAATGAATCTTCGACCTATTTGATGGGATG GTTAAGAGATTATCTATGGTTAAACTCTTCACAACTTATCAATGGATATAACCCTTTTGGTATGAATAGTTTATCAGTCT GGGCGTGGATGTTTTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGCGGATATTGGCAG GAATTAATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCTAATTTGATTCGATGGAGAGATAAGCCAGTTGC TCTTTCCATTGTGCAAGCAAGGTTGGTTGGAATAGCCCACTTTTCGGTAGGTTATATATTTACTTATGCGGCTTTCTTGA TTGCCTCTACATCGGGTAAATTTGGTTAA
Protein sequence (LotjaGi3g1v0022000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHHHLAIAILFLLAGHMYRTNFGIGHSIKDLLEAHIPPGGRLGRGHKGLYDTINNSIHFQLGLALASLGVITSLVAQHM YSLPAYAFIAQDYTTQAALYTHHQYIAGFIMTGAFAHGAIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFH TLGLYVHNDVMLAFGTPEKQILIEPIFAQWIQSAHGKTSYGFDVLLSSTNSPAFNAGRSIWLPGWLNAINENSNSLFLTI GPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTF YWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQ ELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGIAHFSVGYIFTYAAFLIASTSGKFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SUPERFAMILY | 1 | 459 | 459 | 8.76E-221 | ||
| PRINTS | 1 | 19 | 19 | 1.6E-120 | ||
| PANTHER | 1 | 462 | 462 | 3.4E-283 | – | |
| TIGRFAM | 1 | 462 | 462 | 0.0 | ||
| PANTHER | 1 | 462 | 462 | 3.4E-283 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Gene3D | 1 | 462 | 462 | 1.6E-265 | ||
| Pfam | 1 | 455 | 455 | 2.7E-236 | ||
| Phobius | 6 | 14 | 9 | - | – | |
| Phobius | 15 | 18 | 4 | - | – | |
| Phobius | 19 | 57 | 39 | - | – | |
| Phobius | 58 | 77 | 20 | - | – | |
| PRINTS | 58 | 81 | 24 | 1.6E-120 | ||
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 78 | 104 | 27 | - | – | |
| PRINTS | 97 | 123 | 27 | 1.6E-120 | ||
| TMHMM | 102 | 124 | 23 | - | – | |
| Phobius | 105 | 126 | 22 | - | – | |
| Phobius | 127 | 145 | 19 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| PRINTS | 145 | 167 | 23 | 1.6E-120 | ||
| Phobius | 146 | 166 | 21 | - | – | |
| Phobius | 167 | 302 | 136 | - | – | |
| PRINTS | 245 | 263 | 19 | 1.6E-120 | ||
| TMHMM | 245 | 267 | 23 | - | – | |
| PRINTS | 276 | 296 | 21 | 1.6E-120 | ||
| ProSitePatterns | 287 | 296 | 10 | - | ||
| TMHMM | 303 | 322 | 20 | - | – | |
| Phobius | 303 | 324 | 22 | - | – | |
| PRINTS | 303 | 324 | 22 | 1.6E-120 | ||
| Phobius | 325 | 372 | 48 | - | – | |
| PRINTS | 371 | 393 | 23 | 1.6E-120 | ||
| TMHMM | 373 | 395 | 23 | - | – | |
| Phobius | 373 | 393 | 21 | - | – | |
| Phobius | 394 | 434 | 41 | - | – | |
| PRINTS | 427 | 455 | 29 | 1.6E-120 | ||
| Phobius | 435 | 455 | 21 | - | – | |
| TMHMM | 435 | 457 | 23 | - | – | |
| Phobius | 456 | 462 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). | ||
| Cellular component | Thylakoid | A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0022000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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