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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0025600 |
| Transcript ID | LotjaGi3g1v0025600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-galactosidase; TAIR: AT3G13750.1 beta galactosidase 1; Swiss-Prot: sp|Q9SCW1|BGAL1_ARATH Beta-galactosidase 1; TrEMBL-Plants: tr|A2Q448|A2Q448_MEDTR Beta-galactosidase; Found in the gene: LotjaGi3g1v0025600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2787697..2793675) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCTTCTTCAAGCAGCTCATGGCAATGCAGAATGTACTTCTGCTGCTACTCCTTCTGGCATGTTCTTTGATAGGTTC TGCTACAGCCTCTGTGTCCTATGACTCCAAAGCTATCACCATTAATGGCCAGAGAAGAATACTCATTTCTGGATCCATTC ACTATCCAAGAAGCACCCCTGAGGTATTTTTACTCTGGAATGTGCTTCAGGGTCTTGATATTTTCTTGTTTTTATCAAAT GGGTACCTTAAAGTTCCTTCGTTTATCTGTTTTTAGGTGACTTGTATTTTTCTGTTTTTATCAAATGGGTACCTTGAAGT TCCTTCCTTTTTCTGTTTTTGTGTGACTTGCACTCCTAACTTGTAGGTTTCTGTGGTTGTTTGTTTCTTCAGATGTGGCC AGATCTTATCCAGAAGGCCAAGGAAGGAGGTTTGGATGTGATTCAGACCTATGTTTTCTGGAATGGGCATGAACCTTCAC CTGGCCAAGTAACTAAAACAAAATAATATGCCATCTAGTTTTGCTTGTTTTCACTGTTTGAGTTATTGGTACGAAATAAT CAAATGTTCTTGTTTTCTTGATTTATGCAGTATTATTTTGAAGGGAACTATGATCTGGTGAAGTTCATAAAGTTGGTGCA GCAAGCAGGCCTCTATGTTAATCTAAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGTAGTGAAAGTGTTCAT ATCCTCTTGATATTTGCAATTTTTTTTTTGTTAATGTCAAAAGTAGAAATATCTTAACAGCTTTGCCTGATTTGTTTTCA GGGGCTTCCCTGTTTGGCTTAAGTACATTCCAGGTATTAGCTTCAGAACAGACAATGGCCCATTTAAGGTAAGATTTGAG TTATTCTTATACCTCAAGAATGGTTAAAAAGTATCAATTTTTCCTTTTTCATTGATGTGACGTGAGAGCCTCTAATTACT TCTGATTTTTACATTGCCATGATGAAGTTTCAAATGCAAAAATTTACCGAGAAGATTGTCGATATGATGAAAGCAGAGAG GTTATATGAGTCTCAGGGAGGTCCAATAATTCTTTCCCAGGTAGACTAATATGCTGCTAGCTTTCTACTCAATTCCAGGG ACTTGCTTTATAATTATATTATCTTGTGGAGTTTATGCATTGACTAGAATGGAGATGTATTCTACTTGTACAGATTGAAA ATGAATATGGACCTGAGGAGTATGAAATTGGTGCTGCTGGTAAAACCTATACTAAGTGGGCAGCAGATATGGCTCTAGGA CTTGGTACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTGTAAGTTCAGCTGAAGTGTGTGT TTTTAAGGAAACATTTTACCTTGTGTAGAACACGTTATAGCTCTTTTTTTTTTCTTTTTTTGTGAAAGAGGCTTTTATGA GACAAGAGCTTGATGATATGATAGAATTTGAAATTCTTTATTTTGTGTTAAAAACTTACCCTGGAAAAATACCTTGTATT TTTTAAATTCTTTCTTTTGATTCCTAGACAATGCCCTTCACACTAAATTATTTAAAATCCTCTCAAATACATTTCCCCAA TAAAATCATCTACCCAAACAGTCCTTAATTATTTTGTTCTTGACACTGTTTATACCTCCAAGGATTTCAGCTACTAATTT CTCAAAACATTTTACAGATTAACACCTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAACAAGGATTACAAACCAAAG ATGTGGACAGAAGCTTGGACTGGCTGGTATTGATGCTTTCTTTCATTCCTTTATTTATTTATTGTTAAACATGCAAACAA GAGATAACACCTGACTACTAACTGCCTCTATTCCTCTTTTATGCTTTGAAGGTATACTGAGTTTGGAGGTCCCGTTCCTT ATCGACCTGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTACATGGTA ATTTCATTATTTATTGATTTCAATGTGTAATTGTGTAGGCTCACCTTTCCTAAATATTCAACTGTGTCCCTTTATTTTGT TCATTTCAGTACCATGGGGGAACAAATTTTGGTCGAACTGCCGGTGGTCCCTTCATCGCTACAAGCTATGATTATGATGC ACCTCTTGATGAATATGGTAAGATGCCATTACTTGATATGGCCAACAAGTACTGATACTATGATGTATTTTTTCCCCACT TTTTATGTAGAACCTGCTGGGAATAATTCTCAAAATATGATTGTGCTGCCTCTATGTTCCTTAGTTCCGTGAGGCATGCT ATATTGGAACATCGCTGTTGTTCCTATAAGTTAACAAAATAAAATCTAAAGCAATTTGCATCTGGTTTTTTATGTTGAGT CCTGTGAATGATGGATCCTTTGCCTTAGATCTGCTGCATTCATTTATATGAAGAACTTCACATATTTGATGTACATTTAT ACACCTGACTAAAAGTAGAGCACTTATTTTTGTTTTTTCCTTCTGTATAGGATTGCTCAGGCAACCAAAGTGGGGTCATC TGAAGGATTTACACAGAGCAATAAAACTTTCTGAACCTGCATTAGTATCAGGAGATCCGACTGTAACACGGATTGGAAAC TATCAAGAGGTATAATGTGACACAATTATGTGAAAAGTTATCTAACCTTTATAAAATGCTTTATAACCAAACTGAGTTTC TATCTTTTATCATTAATGTTCAGGCTCATGTCTTCAAATCAAACTCGGGAGCCTGTGCTGCGTTTCTAGCAAACTATAAC CCAAAATCTTATGCAACAGTGGCATTTGGGAATATGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCCGACTG CAAGAACACCGTTTATAACACTGCAAGGGTAAAAAAATTGAGCGAATTTTAATTTCGAACGACTTGCTGGGTTGGTTATC AAGAGCTTAAATATGTGGTTGAGTGGATTTAATAACTTTTATGCATGCAGTTTTAGCTCTATCTGCAAGATTGACTTTTT TTCTTTCATGAAAATAGACATACAACAAGAAAAGAATGATAACTATTGTAGTGTTTTCTTATTGCTAAATCTTCTTTTGC AATGAAGAGAAAGGTTTTTTTCTTGTGAATTTTCGTGAGCCGAATTTCAGTGAGATTAAAATTCCTAAATCTTTGTACAG GTTGGTTCCCAGAGAGCCCAGATGAAGATGACCAATGTTCCTATTCATGGTGGACTCTCTTGGCAAGGGTTCACTGAAGA AACAGCCTCGACTGATGACAGTTCCTTCACTGTGACTGGCCTATTAGAGCAGTTAAATACAACAAGAGATTTATCCGACT ACTTGTGGTACTCCACGGAGTGAGTGACATAAAACATTGCACTTCACTTCCCTTTTTCCCAATTTTATTCTGTTTTTTCA TGTCTTATAGTTGTGTTGCTCCTTTTTTGCTAGTGTCGTGATTGACCCCAATGAAGAATTTTTGAGGAATGGAAAGAATC CTGTTCTTACAGTGTTATCTGCTGGGCATGCTATGCATGTTTTTATCAATGGCCAGCTATCAGGTGAGGAGCATAATGCT GGTTTACATAATTTCAGAAACACTTGACTCACCTACTTTAGAACAATCTCAGTGCTGGCTTTATTCCAAATCTTCAACTT GTATATAAGTACTTTTTCATTGTAAGATCCAAGAGGAAGAAGGGTCATCCCTAAAACTAGTTGATGTATGCTTTTGAGGA TTCAATACATTAGAATGTTGCATGGAATCAATATATTATCTAAGCTCTGGTTGATACATCATACATTGAGCCTATTATAC TCCTTTTGATCAGGAACTCTATACGGAAGCTTAGAATTTCCCAAACTGACATTTAGCGAGAGTGTGATGCTCAGACCTGG TGTTAACAAAATCTCTCTTTTAAGCGTTGCAGTTGGACTCCCGGTTTGTTCTCTCTCTCTCTCTCACCCACAAGCGTGCG CACCACACACACTACATTGAAAATAGATTGTAGATGCACACCTGCATTTTCACACATGGCTAATTTTTCAGAATCACAAA CTCTATTCCAGTATGATCATGACTATATTACTCACTTGATTTTTCAGAATGTTGGCCCTCATTTTGAGACATGGAATGCT GGTGTTCTTGGTCCAATTACATTAAACGGTCTCAATGAGGGGAGAAGGGACTTGACTTGGCAGAAATGGTCTTACAAGGT TTTTCCTTGAACATTCCCCATATCTTCTCTTTGTTAATGCTTCATTTTTCTCTAAATTCAAATTCACATTTTATTTAGGT TGGTCTTAAAGGTGAAACCCTGAGTCTTCATTCTCTCGGTGGAAGTTCGTCAGTGGAGTGGGTTCAGGGGTCTTTAATTG TTCAGAGGCAGCAATTGACTTGGTTCAAAGTGAGTATATCACAAAGCCTCTATAATCTTCTAAAATTAGAGAAACCTATG CAGACTTTGCTAATTTTTCTGGACTGTTCAAGATAGTACTCTTTCATTACTATTGTTCATTTGCTATAAATAAGTTTTAG TGCTTTGTCTTTGTGTACCTCATTAGATCACTTCATATTGATATTAGTATCAGATTGTTCAGTCTCTATATTCTCTTTCT TTCTCCAATGTATACCCTATAACTTAAACACACTTCAATGTCTGTTTTAATATCATTTCAGACTACTTTCGATGCCCCGG ATGGAGTTGCACCATTGGCTTTAGACATGGGTAGCATGGGCAAGGGTCAAGTGTGGTTAAATGGACAGAGTCTTGGCCGC TACTGGCCTGCTTATAAAGCATCTGGTACCTGTAATAACTGTGACTATGCTGGAACGTACAATGAGAATAAATGCAGAAG TAACTGCGGCGAGGCTTCCCAAAGATGGTGAGTGAGAAATATATAGCTTAACCTGAAGTTGTCTAATGCTGATGATAAAC CTTTGACAAACTAACTACTGGTTGGTAATTTCAGGTATCATGTTCCTCATTCATGGCTGAAGCCAACTGGGAATTTATTG GTTGTGTTTGAAGAATTGGGTGGAGATCCCAATGGGATCGTTTTGGTTAGACGCGATATAGATAGTGTGTATGCTGATAT TTATGAATGGCAGCCAAATGTTATTAGTTATCAGGTGCAAGCTTCTGGCAAATCTAGCAAACCAGTGAGACCAAAAGCAC ATTTATCATGTGGCCCTGGACAAAAAATCTCATCAATCAAATTTGCTAGTTTTGGTACTCCGGTTGGGTCTTGTGGAAAC TTCCAAGAAGGAAGCTGCCATGCTCACAAGTCTTATGATGCCTTAAAAAGGGTATTGCCTTCTGCACTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTAATTGGATGGTTACCCTTGAGTGTCACGAACCAACTATCCCAAAAGCTTTAGGG TGAAGACACGTGAATAGGTTTGTATTATATTTCTAACACACCTCACACAAGAGCCAATTGGGCTTGAAGTATGGACAATA TATAGACTTACCTACTTTGTGCTGAAATTAATCTTTTCTATGTGAATATTAGAAGTAACAAGGATCGAACTCTTGACCAC TTGGTCACTTAGGCTCTTTGATACCATGTCATGAACCAACTATCCCAAAAGCTCAAAGCTATTGAGTGTAGACACTTGAA TAGTTTTGTTATATTTCTAAGAGGGAGCTATAGCTAAATACAGTTGTTAGTAAAACATGATCTGTTTTAGTTCTAAAGCC CTTTACTAAACAAAATGTTAGGTTCAATTCTGCTAGTCAAATTATCCATTTTATGCTTGTGGTCACTTTTACTTGGTTCA TTCTTGACTAGTGACTTTATTGTTGCAGAATTGTGTTGGACAGAACTTTTGCAAAGTAACAGTGTCGCCTGATAATTTCG GAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAGGCCATTTGTTCCTGA
CDS sequence (LotjaGi3g1v0025600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTTCTTCAAGCAGCTCATGGCAATGCAGAATGTACTTCTGCTGCTACTCCTTCTGGCATGTTCTTTGATAGGTTC TGCTACAGCCTCTGTGTCCTATGACTCCAAAGCTATCACCATTAATGGCCAGAGAAGAATACTCATTTCTGGATCCATTC ACTATCCAAGAAGCACCCCTGAGATGTGGCCAGATCTTATCCAGAAGGCCAAGGAAGGAGGTTTGGATGTGATTCAGACC TATGTTTTCTGGAATGGGCATGAACCTTCACCTGGCCAATATTATTTTGAAGGGAACTATGATCTGGTGAAGTTCATAAA GTTGGTGCAGCAAGCAGGCCTCTATGTTAATCTAAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGCTTCC CTGTTTGGCTTAAGTACATTCCAGGTATTAGCTTCAGAACAGACAATGGCCCATTTAAGTTTCAAATGCAAAAATTTACC GAGAAGATTGTCGATATGATGAAAGCAGAGAGGTTATATGAGTCTCAGGGAGGTCCAATAATTCTTTCCCAGATTGAAAA TGAATATGGACCTGAGGAGTATGAAATTGGTGCTGCTGGTAAAACCTATACTAAGTGGGCAGCAGATATGGCTCTAGGAC TTGGTACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTATTAACACCTGCAATGGCTTCTAT TGTGATTATTTCTCTCCAAACAAGGATTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTATACTGAGTTTGG AGGTCCCGTTCCTTATCGACCTGCTGAAGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCA ATTATTACATGTACCATGGGGGAACAAATTTTGGTCGAACTGCCGGTGGTCCCTTCATCGCTACAAGCTATGATTATGAT GCACCTCTTGATGAATATGGATTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTTTC TGAACCTGCATTAGTATCAGGAGATCCGACTGTAACACGGATTGGAAACTATCAAGAGGCTCATGTCTTCAAATCAAACT CGGGAGCCTGTGCTGCGTTTCTAGCAAACTATAACCCAAAATCTTATGCAACAGTGGCATTTGGGAATATGCATTACAAC TTGCCTCCTTGGTCTATAAGCATTCTTCCCGACTGCAAGAACACCGTTTATAACACTGCAAGGGTTGGTTCCCAGAGAGC CCAGATGAAGATGACCAATGTTCCTATTCATGGTGGACTCTCTTGGCAAGGGTTCACTGAAGAAACAGCCTCGACTGATG ACAGTTCCTTCACTGTGACTGGCCTATTAGAGCAGTTAAATACAACAAGAGATTTATCCGACTACTTGTGGTACTCCACG GATGTCGTGATTGACCCCAATGAAGAATTTTTGAGGAATGGAAAGAATCCTGTTCTTACAGTGTTATCTGCTGGGCATGC TATGCATGTTTTTATCAATGGCCAGCTATCAGGAACTCTATACGGAAGCTTAGAATTTCCCAAACTGACATTTAGCGAGA GTGTGATGCTCAGACCTGGTGTTAACAAAATCTCTCTTTTAAGCGTTGCAGTTGGACTCCCGAATGTTGGCCCTCATTTT GAGACATGGAATGCTGGTGTTCTTGGTCCAATTACATTAAACGGTCTCAATGAGGGGAGAAGGGACTTGACTTGGCAGAA ATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACCCTGAGTCTTCATTCTCTCGGTGGAAGTTCGTCAGTGGAGTGGGTTC AGGGGTCTTTAATTGTTCAGAGGCAGCAATTGACTTGGTTCAAAACTACTTTCGATGCCCCGGATGGAGTTGCACCATTG GCTTTAGACATGGGTAGCATGGGCAAGGGTCAAGTGTGGTTAAATGGACAGAGTCTTGGCCGCTACTGGCCTGCTTATAA AGCATCTGGTACCTGTAATAACTGTGACTATGCTGGAACGTACAATGAGAATAAATGCAGAAGTAACTGCGGCGAGGCTT CCCAAAGATGGTATCATGTTCCTCATTCATGGCTGAAGCCAACTGGGAATTTATTGGTTGTGTTTGAAGAATTGGGTGGA GATCCCAATGGGATCGTTTTGGTTAGACGCGATATAGATAGTGTGTATGCTGATATTTATGAATGGCAGCCAAATGTTAT TAGTTATCAGGTGCAAGCTTCTGGCAAATCTAGCAAACCAGTGAGACCAAAAGCACATTTATCATGTGGCCCTGGACAAA AAATCTCATCAATCAAATTTGCTAGTTTTGGTACTCCGAATTGTGTTGGACAGAACTTTTGCAAAGTAACAGTGTCGCCT GATAATTTCGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAGGCCATTTGTTCCTGA
Protein sequence (LotjaGi3g1v0025600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFFKQLMAMQNVLLLLLLLACSLIGSATASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQT YVFWNGHEPSPGQYYFEGNYDLVKFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFT EKIVDMMKAERLYESQGGPIILSQIENEYGPEEYEIGAAGKTYTKWAADMALGLGTGVPWIMCKQDDAPDPIINTCNGFY CDYFSPNKDYKPKMWTEAWTGWYTEFGGPVPYRPAEDLAFSVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYD APLDEYGLLRQPKWGHLKDLHRAIKLSEPALVSGDPTVTRIGNYQEAHVFKSNSGACAAFLANYNPKSYATVAFGNMHYN LPPWSISILPDCKNTVYNTARVGSQRAQMKMTNVPIHGGLSWQGFTEETASTDDSSFTVTGLLEQLNTTRDLSDYLWYST DVVIDPNEEFLRNGKNPVLTVLSAGHAMHVFINGQLSGTLYGSLEFPKLTFSESVMLRPGVNKISLLSVAVGLPNVGPHF ETWNAGVLGPITLNGLNEGRRDLTWQKWSYKVGLKGETLSLHSLGGSSSVEWVQGSLIVQRQQLTWFKTTFDAPDGVAPL ALDMGSMGKGQVWLNGQSLGRYWPAYKASGTCNNCDYAGTYNENKCRSNCGEASQRWYHVPHSWLKPTGNLLVVFEELGG DPNGIVLVRRDIDSVYADIYEWQPNVISYQVQASGKSSKPVRPKAHLSCGPGQKISSIKFASFGTPNCVGQNFCKVTVSP DNFGGDPCPNVMKKLSVEAICS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| ProSiteProfiles | 1 | 22 | 22 | 5.0 | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 30 | 30 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 13 | 25 | 13 | - | – | |
| PANTHER | 13 | 786 | 774 | 0.0 | ||
| PANTHER | 13 | 786 | 774 | 0.0 | – | |
| Phobius | 26 | 30 | 5 | - | – | |
| Gene3D | 28 | 348 | 321 | 1.0E-112 | – | |
| Phobius | 31 | 822 | 792 | - | – | |
| SUPERFAMILY | 32 | 347 | 316 | 4.65E-107 | ||
| Pfam | 39 | 343 | 305 | 1.8E-118 | ||
| PRINTS | 42 | 59 | 18 | 5.1E-86 | ||
| PRINTS | 63 | 81 | 19 | 5.1E-86 | ||
| PRINTS | 118 | 137 | 20 | 5.1E-86 | ||
| PRINTS | 175 | 190 | 16 | 5.1E-86 | ||
| ProSitePatterns | 177 | 189 | 13 | - | ||
| PRINTS | 254 | 269 | 16 | 5.1E-86 | ||
| PRINTS | 291 | 306 | 16 | 5.1E-86 | ||
| PRINTS | 311 | 327 | 17 | 5.1E-86 | ||
| Pfam | 351 | 422 | 72 | 3.1E-27 | ||
| SUPERFAMILY | 406 | 577 | 172 | 3.77E-27 | ||
| SUPERFAMILY | 586 | 749 | 164 | 1.13E-28 | ||
| Gene3D | 590 | 738 | 149 | 8.0E-15 | ||
| PRINTS | 622 | 636 | 15 | 5.1E-86 | ||
| PRINTS | 649 | 665 | 17 | 5.1E-86 | ||
| ProSiteProfiles | 759 | 822 | 64 | 10.383 | ||
| Pfam | 787 | 821 | 35 | 8.5E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi3g1v0025600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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