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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0029300 |
| Transcript ID | LotjaGi3g1v0029300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit; TAIR: AT1G17590.1 nuclear factor Y, subunit A8; Swiss-Prot: sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8; TrEMBL-Plants: tr|G7IS22|G7IS22_MEDTR CCAAT-binding transcription factor; Found in the gene: LotjaGi3g1v0029300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3206552..3212916) extracted from Lotus japonicus Gifu genome v1.2.
GAGTGTAGTTGGTGCGTTAATGCTGATGCAGCAGAGAGAGAGAGAGAAAGAGAACAGTGATGTGTGTTGTTTTTAGGGGA ATTAAGTAGAAGAAGTAATAAATGTCCTTTCAGTTTCAAACAAAAGGGGTCAATACTAGACTTAGCACTAAAGCCAAGAG AGAAAGAGAGAGACCAAATACAAAGTGAAAGACCAAGAAGCACTGAAACAATGATGGAGTCTTTGGATTGTTGTAGTACT AGTGTTTGTGTTTAAGTTGTGTAGTGGGGTACTACCATTCTCATGTGTGACTAAGAGAGAGAGAGAAAGAGAGTTTGTAC TAGTTTCTTCTTCTTCTAAGCTAGTTACAAGTTTCCTGGCAGAGGACATGCACAGGTTCTATTCTGCTCCCTTTTCATAT TCTACCAATAATACACAATTTTCTGATTCCTTTTCAATTTACCCAATTTTCAAGGTCTCTCTTTTTCTTTGTTTTGGTCC ACCTGCTTTGTTTTTTTTTTCTTCCCATTTTTCTGTACTTTTTATTTTATTTTCTGGAATAGAAGATTTGTTTTTTCTTC CCTTGGAATTCCATTTCATGGCATGCCTGTCTGTCACCTGTGAATCTATAAAAGGGTAGTAGTAGTAGCATTTAGATTTT CAGATTAGGGAACTGATCTAAGATTAAGTGCATGTTTGAAACACCTTTTACAATTGATTCAGAATCAATTCTTAGGAGAA GATTCAGTGAAGTTTATGGATTTTAGAATTGTTTGATCCAAACATGTTCTAAGATAGATAGTGGGTTTTCTTATTCTGCA CTGGACTTCTTCTACCTGCTGATGGTTGACATTTGTTGTTGTTGTTTTTCCCCTAACCTGTGTATAATCTGGGAATTAAG CAGTTTTAGAAACCTTTCCAATTTAGGCGTGAAAACCCTGAAACTTCAATTAGGAATTGATTGATCCAAACATGTTTTTG TTTGTTTTTCATAACTTCATTTTGGGTGTATTCTTTTGTTTTGTTTTTCATACCTTTTAATGCCCAAATAGGATTTTTTT TCAATGAACAACTCGCATGCATTCTACTGTGTTGATTCAGAGTGTCGATATGTTCAAAAAATTGTCTTTTGTTTGAGGGT TTTTTCTTTAGGGTCATAAGCTTGTAATTAATGAGCCAACACAGTTGGCAAGGAATAAGGATGACAGACCATTTCCCCTC AGAAAGTTGTGTGTTTGATTCCCGCTACCAATGTGAGGGTTGTGTTGATGGATGATATGTAAGTACCTCTGTAAGCGACC TATGGTCCCAGAGGCATGCTTTGACCCACAGTGGTGACCGGAGCTGAACCCACCCAAACTTTTGTCCATCGAAAAAAAAT GCTTTTAATTGATTTCTTAAAGAAATTTAGTAGTTACCCCACCATTGAACTTCCTTTTGTACAAATGAAGTCCACATTCA ATGTACCTATAAGGGAAGTCCAAGGAGAAGGGAAACACACTAAAAAATATAATTTTTTAAGAATTTAAGTAAGTACCTTA TGTGTGTTTCCACTTATGGGAGCTTTTGTAAATAATGTAATTGTTTTAAAACTATGCTGACAAGCACCAAATGGGAGCTT TTGTAACCACTTCTTCATCCCCATTGATTTCTTTATTTGTTCAGTCAGTTATATGGTGAAATAGTTTTTTATCCCATAAA TCTCCATTTCTAAATTTCAAGCATAGGCTTATCTTCTAAAGCATACATATACATGCATATAAATCAGTTTCTCCCTGGAC TTGTTTTGTCCTTTTTACAAAGGTTTGTAGAAATTGACATGTTCCTTTATAGATTGGTATGCTTACATCATTCCAAACTC TCAAAAAGTTCATAATTTGATTGAAACTCCTGAAAGCTACCACGACAATCTGGTAGGAGTATGTGAGAAAGCTGTAACCA AATTCAGGTTTCTGAAATCTATTTTTCTATTTTGAAGGTAAGTGGATTATTATTCTTAGTGATAAGCCTTTAGCCATAGT GTAAGGAAAAGAATGAAGTGTTTATGTGAGAAGGACCCTGGTCTATGTTCTGCTCATCCATCATCCACCCATGTTCTTGG AGGCCCATCATGGGCAACTTCTTCTGAATCTGAAGTCCCACATTCCTCTATCTCCAACAGTTTGAGCTTGAAAGTGGATG TTCTGCCACAGCAATGCCACAAGAGCAAGGCACTGAGTTTTCAATTCCAAGAACAGGATTCATCTTCATCTCAATCATCT GGTCAATCTTATCCCGAAGATGGATCTGCACAATCAGGTATTTTGGATTAAAACCCTGTCTATTTGTATGGTTCTGAATT TCTGTGCTTATCAACGGGTGTTTTGTCATTTCTTTCGGCTATTGGTGTATGTATTTTCTACTGGGAAGCTGCAGAAGCAC ACTGTAGGGCAATATTGGTGTTGGCTATGGGATATTATACCCCTCCATTTTTCTTCCAAAAGTTGGAATTTCTCTTAGAT AATTTGATCATATTCTGAAAATTCATATAAAATAACCTGATATGTTACTTTCTAACCCATATTGGATATATTGGATACTA GGTCAAATTTCTTTCCAGCATAGTTCTTCTACTGGTTCCGCATTTAGCAACGCTGAGGGGAAGAGTATGGGATACCTCGT CAGGTCATCTATGGCGAGTCGGGATTTCACCTACCCTCCAGTACTGGATCACAGCCAAGCACTTGTAAGTAGATATATCT TTTTGATCCTGTGGATAGAAGATGTATGCAGACAGTTTCTCAAAATTTGGGTTTCAGGCTCATGCTGCATTCTACTATGC TGATCCATGCTATACTGGGGCAGCATATGCCCCGCAGTCTAAGGTAACCAGTACTTCAGTAGAGATGATTGATATCTTTT AATTACTTGTTATTTATGTCACTTCGTCTCCACTCATGTATATTGATATTCACCTTAAAATAGAAGTAAAACATGATCTT ATGAGTTACGACGATTACTGTTAACTGACATTTCATGAAATCACATTGTGGATTAGAAAGTATTTTATTTAATAGTTCTG ACTTCTGATACCATCTTCATAAATATTGCTCCACCTTTTCAATTCTTACTGCATTTGGTAGGATGCCATCTTCTTTTGTG TTGAGAAATGAGAACCACTTCATTGTTATTGTGTCGACTTAGAAATTGGGTAAAGGACTTTTTGCGAAAGCATTTGATTC TGACCAAATTCTTCAAGAACTTTCAAATATATCTTAGGATTAAATGTTGCAGCTGGTTAATCCTGTCTATACCTTTATAT GCTCCTTCAAATGGATCATTCAAGAATTCATGCTCTTTGCAGTTTAATTTTTTACAGCTTGCAGAGTCTTCTCAGCCAAT AATCCATCTTCAATTAATTTTTAAGATTTATGGTGCTGCTGAAAATTTACCCAATAATAATCCTTACCCATTCCACCCAC ACCCCAAGAGAGAGATAGGAACTGAAGTGGGAGAAAATTGAGATATGATAGGTGATGTGATAGGAAAAGTAGATAGAGAT AGGAAGGAAAAGTGGGTGGAAATAGGATGGAAGAGAAAGTAGGGCTAATTTACCTGTGTAGCAGATGCTGTTTGTTTTAA AGTTGTTCTGTGAATCATATTTCCATTTAAAACTTCTCTCTATCTTTCCATTTGAAAACATTTGTTAGTTTTCCTTTGAA TCTCCTCTGGGTGTTTTTTCATAGCATTTCGTATTTATTCAAATAATTATTTATGGTGCGAAAGCTACTTCTTATTTTTG ACACAAGATTTTCTTGATTAACATTAGTTGGAGGTGCAATCCTTTCTAGAAAACCTGATTTATTCTTTTTGACCTTTTCC TTTGTTGATTTATAAAAGTGAATGAGCTCACTATCTATTATAGAGTTGTACTGTACTGGTCAAGCTGCAATTCCTTGGAT TTCTGATATCATATATGACATGTTAGTTCTCTGATATTGCATAAAGCCATGACACTGCTAGCTAGTTACAGGCTTATTAA AGCATCAAGATGAATTCTGAAATATATGCCATCAAAATCTGACCAGATTCATCATGCCCAGCTTATGGGAACTGGTGTTC GAGTCCCTCTGCCATCTGATTATACAGAAGAACCCATATACGTGAATTCAAAGCAATACCATGCTATTCTGAGGCGAAGA CAGTATCGAGCTAAACTTGAAGCGCACAACAAACTCATCAAGGATCGGAAAGTAAGGACTTGTTTGATTGCTTCTTTGTG AAACAAGTTTATAGTTTTTAAACATGAGAAAAACTTGTTTGATATGACCTATTTTAAAAAACCACTCTTAAAACCTGCTC TTATTTCAGCTTTTCAGAATTAAAATCTCAAAACATTTCAGACTTATTTCATGTTTCTGGTTTTAGTTTCCATGTCACAG GTCTTTCAACTTGTTCAAGCCTAGAGTAGTATTTTTCTGTTTTTTCATTTCTGGAAGATCTATATCTCTTAAAACCACAC TAAAAATATTGTTCTGCAGCCTTATCTTCATGAGTCCCGCCATCTACATGCATTGAAGAGAGCTAGAGGTGTTGGCGGCC GCTTCCTCAACACTAAACAACTCGAAGAATCAAAGCTTACTTCACCAAACCACGGCCTTAAATTTTCCGGCTCTACTCGT TTGAATTTGAGTGGAAATGTGCCAGAATCTAATGAAACCCATCATCAGGTAAAAAATAACAGAGTTGGCGTTTCCACCTC CAACTATTTTGATGTCACATATGCATCTAATAAGAATGCAATTTTCCATCAACAGGACTCAGATTTCAGGTTATGCAGTT ACCCTTCTCACACTGGAAGGAACATGCAGGATTATACCGTCGATAAGGGCGGTGGTGGTGCGAATCAACGCCGACTATCT GTCCTCATGTGATGTGACAGACTTGAATGTGGAACACTTCATATCATGGTGGCTGTGGTTCTTCTTCATTCAGTTGGAGA TAACTGCATGTGTTCCATTGGGAAGTCATCCTTGGCTCATATTTATTATATGTTGGTATTTGTTTGTTTTGATTTTACAG GACATTGATGTGGACATCATGTTTTGCTAGTTGTTGTGTATCCTAGAATTGTTTGGGTAAAGAAACAAGTACAAGTAGTT ATTAAACTGAGTTGTCAAAAACAATGATTTTCTATGTTGATGTCATGTTTGTAACATGTCTTGTTGAATTGGGAATGGTT TAAATTGTTGGTCTCTATTCTCTAATGTGTGACCTTATGATGCTTTTCTAATTGGGCGGCTACCATATTTCTTCGAAGCC ACCATTCTACCTTACTTGCACCACCAACATAAAATATTTTTGCCCCACCATCCAACATAATATTTGATTATATGTCACTC TCCAATCTTGGTTTAGTTGGTACATGTTCTTCCTTGAAATTTAGTTTTGGATTTGAGTTTTTTGAATTGCTGTCAGTAAT TTTGAGTCGGGTAGGACCACCATTAGCGGTAAAACTCTCCATACCAAATAGTTAACACAACTGTATTAAGAGGGGTTCGA AACCGAAACCTCTAGTTTAAGCTAGAACAACTGCGTACCATGGATTTGAGTTTTATTTTTATTTTTTGAAATGATGGATT TGAGTTTTATAAATAGGAAAGAAGTTTATAAATAGAAAAAAAAACTAATGAAAAAGTTAGCATTAGTAAGCATTCGTATC CCATTTTTGAACCTTAATTTTTTTTTTGATGAGCTTATGAACCTTAATGTTATTACTGTTAGATATCCTTTTAGTACTTA GAGAGATTAATAGATTATTATTGTCCCGCAAGATAGCTTAAGGTAGCGTTTGGTGACGGAACGGAACATGACAGAACGGA ACGGGACAGAACAGGATGAAACAGGACAATAATGTTCTGTGTATTGTGTTTGGTAACTCCAAGTCAATAGAACAGAACCT TGATTTTAATTACATATATAACCCTGCACGTTTAATATTTGATTGAGGAAAACAAATTGAACTCAATCGAACATTTTGCA TTGAAACCGTTTGTTATTGTTTACTTCATGAAATAATAACTTATTTCTTTAAAATAATCACTTATATATTGTTTAAGTTG TTTCAGTATGCTATTGAAAAAAGCAGAAACCTAATTATTTATTTAAGCTATTTTAAGTGTGTTTGTTTAGATTGAAAAAT ATTGGTTTTTAACTATAATTTTTTATTTTATTTTAAGAGATTTTCAGAAAAGCATAAGTTGATTCGTGTTTGACTACTCT TATTAAAATCACTTTTTTTATCTCCTCTCATCTATCACCATAGATTTTAATTATAAGCTAAAGTAACTGTTTCAAATAAT CTGTTTTCAGCTTCAGCTGAAACAAACACAAAAAGTGATATTTTG
CDS sequence (LotjaGi3g1v0029300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTGTTTATGTGAGAAGGACCCTGGTCTATGTTCTGCTCATCCATCATCCACCCATGTTCTTGGAGGCCCATCATG GGCAACTTCTTCTGAATCTGAAGTCCCACATTCCTCTATCTCCAACAGTTTGAGCTTGAAAGTGGATGTTCTGCCACAGC AATGCCACAAGAGCAAGGCACTGAGTTTTCAATTCCAAGAACAGGATTCATCTTCATCTCAATCATCTGGTCAATCTTAT CCCGAAGATGGATCTGCACAATCAGGTCAAATTTCTTTCCAGCATAGTTCTTCTACTGGTTCCGCATTTAGCAACGCTGA GGGGAAGAGTATGGGATACCTCGTCAGGTCATCTATGGCGAGTCGGGATTTCACCTACCCTCCAGTACTGGATCACAGCC AAGCACTTGCTCATGCTGCATTCTACTATGCTGATCCATGCTATACTGGGGCAGCATATGCCCCGCAGTCTAAGCTTATG GGAACTGGTGTTCGAGTCCCTCTGCCATCTGATTATACAGAAGAACCCATATACGTGAATTCAAAGCAATACCATGCTAT TCTGAGGCGAAGACAGTATCGAGCTAAACTTGAAGCGCACAACAAACTCATCAAGGATCGGAAACCTTATCTTCATGAGT CCCGCCATCTACATGCATTGAAGAGAGCTAGAGGTGTTGGCGGCCGCTTCCTCAACACTAAACAACTCGAAGAATCAAAG CTTACTTCACCAAACCACGGCCTTAAATTTTCCGGCTCTACTCGTTTGAATTTGAGTGGAAATGTGCCAGAATCTAATGA AACCCATCATCAGGACTCAGATTTCAGGTTATGCAGTTACCCTTCTCACACTGGAAGGAACATGCAGGATTATACCGTCG ATAAGGGCGGTGGTGGTGCGAATCAACGCCGACTATCTGTCCTCATGTGA
Protein sequence (LotjaGi3g1v0029300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKCLCEKDPGLCSAHPSSTHVLGGPSWATSSESEVPHSSISNSLSLKVDVLPQQCHKSKALSFQFQEQDSSSSQSSGQSY PEDGSAQSGQISFQHSSSTGSAFSNAEGKSMGYLVRSSMASRDFTYPPVLDHSQALAHAAFYYADPCYTGAAYAPQSKLM GTGVRVPLPSDYTEEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHLHALKRARGVGGRFLNTKQLEESK LTSPNHGLKFSGSTRLNLSGNVPESNETHHQDSDFRLCSYPSHTGRNMQDYTVDKGGGGANQRRLSVLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 270 | 267 | 2.1E-108 | – | |
| PANTHER | 4 | 270 | 267 | 2.1E-108 | ||
| MobiDBLite | 15 | 39 | 25 | - | – | |
| MobiDBLite | 19 | 39 | 21 | - | – | |
| MobiDBLite | 66 | 103 | 38 | - | – | |
| SMART | 172 | 233 | 62 | 3.3E-36 | ||
| ProSiteProfiles | 173 | 233 | 61 | 36.233 | ||
| Pfam | 175 | 230 | 56 | 1.0E-25 | ||
| PRINTS | 176 | 198 | 23 | 3.6E-23 | ||
| ProSitePatterns | 178 | 198 | 21 | - | ||
| PRINTS | 207 | 230 | 24 | 3.6E-23 | ||
| MobiDBLite | 241 | 266 | 26 | - | – | |
| MobiDBLite | 241 | 309 | 69 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | CCAAT-binding factor complex | A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. |
Expression pattern of LotjaGi3g1v0029300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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