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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0029600 |
| Transcript ID | LotjaGi3g1v0029600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lectin protein; TAIR: AT5G10530.1 Concanavalin A-like lectin protein kinase family protein; Swiss-Prot: sp|Q41161|LCS2_ROBPS Seed agglutinin 2; TrEMBL-Plants: tr|L0H879|L0H879_STYJP Lectin protein; Found in the gene: LotjaGi3g1v0029600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3232806..3234334) extracted from Lotus japonicus Gifu genome v1.2.
CCATCCCTACATCACAATTAATCACATTCAAGTACTACTTGATCAACTGAAGGCTATCATGGCTAGTTTCCAAAGCCAAA AGTCACTCACTTCTCTCTTAACCTTGTTCTTCCTCTTGCTTGTGAACAAGGTGAACTCAACAGACTATCTCTCTTTCACC TTCAACCAGTTCACACCACAACAGCCTGATTTGCTCTTCCAAGGTGACGCACTCGTTGCCCCAACAGGGAAGTTACAACT TACTAAAGTAGAAAATGATCTCCCAGTCTACAAGTCCACTGGCCGAGCCCTGTATGTTGCCCCAGTTCACATCTGGGACA GCAAAACGGGCAATGTGGCCAGCTTCATTACTTCATTCTCCTTCATCATCGATTCACCCAACGTGAACAAAATAGCAGAT GGCCTTGCCTTCTTTCTCGCACCCGTGGATACCCAGCCCCAAAAACCTGGAGGATTACTCGGGATTTTCGACAACGACGA TCCCAGTCAATCAAACCAAGTTGTTGCGGTTGAGTTCGATACTCACTTCAACTCGAACTGGGATCCGAAAAGTCCACACA TTGGAATCGATGTCGGCTCCATCCAATCATCAAACGCTACATCGTGGGGTGCTGCCTATGGCGAAGTAGCCAATGTTTTC ATACACTACCAAGCTTCCACCAAAGAGTTAACCGTCTCATTGGACCACCCTTCGAGTAAGGACACTTACACCGTCTCTTC CGTTGTAGACTTGAAGAATGTTCTTCCAGAGTATGTAAGAGTTGGTTTCTCAGCTACCACTGGACTCAATCCAGACCACG TTGAAACAAATGATGTTCTTTCATGGTCTTTTGAATCGGATTTGAAAGCAGGTGGCCCCCAAGCTGCAGGTGCTTTTAAG AACAACCATGGACTTGATTCCATGTAGTTTCCAAAATATTATTAGGTGTGTGGGTGTGGGTGTGACGGAAAACAACAAAT AAGACCTGCAAAAATGGTTATTATATTAGCGAGAATTGTTGCCACACTCACTTTTGTTGCGGTTTTAGACAGCCACAACC TCAAAAGTTGGTGTCACACACTATTTAGCAGTTCAGGGATAATTTATGTATGTCATTAGTATGTTGTAACGTCCAGCTAT GGACTTGATTCCATGTAGTTTCGTGTGTGAGTGTGGCGGAAAACAACGACCATAAGACCAGCTGCAACAATGGTTATTAT ATTGTAAACTTGTAACACGCTCATGTTTATTTAGCACTAATATATCAAGTAAGTAAACACCCACCCACAACTAAATATAA TTTGAATCTACTCTGCATAATATTTAAGGGTGGCCTCTAACTTGCTCTTTTTTTTCCTTATCTCTCTTCTCTTCACCCCA TTCACACTCTTCACCTCAAAATCCACTCTCTTCCTCACATTTATTCACATCATTTTTCTTTTTTCAATTTTCATTCTCTC TAAGCTTTAAACGTAAAGTGTATGCACTCTATCCTCAACCTTCTGAATAATTTTGTCAACTCTAATCATCGCATTATGTT GTACCTTCT
CDS sequence (LotjaGi3g1v0029600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGTTTCCAAAGCCAAAAGTCACTCACTTCTCTCTTAACCTTGTTCTTCCTCTTGCTTGTGAACAAGGTGAACTC AACAGACTATCTCTCTTTCACCTTCAACCAGTTCACACCACAACAGCCTGATTTGCTCTTCCAAGGTGACGCACTCGTTG CCCCAACAGGGAAGTTACAACTTACTAAAGTAGAAAATGATCTCCCAGTCTACAAGTCCACTGGCCGAGCCCTGTATGTT GCCCCAGTTCACATCTGGGACAGCAAAACGGGCAATGTGGCCAGCTTCATTACTTCATTCTCCTTCATCATCGATTCACC CAACGTGAACAAAATAGCAGATGGCCTTGCCTTCTTTCTCGCACCCGTGGATACCCAGCCCCAAAAACCTGGAGGATTAC TCGGGATTTTCGACAACGACGATCCCAGTCAATCAAACCAAGTTGTTGCGGTTGAGTTCGATACTCACTTCAACTCGAAC TGGGATCCGAAAAGTCCACACATTGGAATCGATGTCGGCTCCATCCAATCATCAAACGCTACATCGTGGGGTGCTGCCTA TGGCGAAGTAGCCAATGTTTTCATACACTACCAAGCTTCCACCAAAGAGTTAACCGTCTCATTGGACCACCCTTCGAGTA AGGACACTTACACCGTCTCTTCCGTTGTAGACTTGAAGAATGTTCTTCCAGAGTATGTAAGAGTTGGTTTCTCAGCTACC ACTGGACTCAATCCAGACCACGTTGAAACAAATGATGTTCTTTCATGGTCTTTTGAATCGGATTTGAAAGCAGGTGGCCC CCAAGCTGCAGGTGCTTTTAAGAACAACCATGGACTTGATTCCATGTAG
Protein sequence (LotjaGi3g1v0029600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASFQSQKSLTSLLTLFFLLLVNKVNSTDYLSFTFNQFTPQQPDLLFQGDALVAPTGKLQLTKVENDLPVYKSTGRALYV APVHIWDSKTGNVASFITSFSFIIDSPNVNKIADGLAFFLAPVDTQPQKPGGLLGIFDNDDPSQSNQVVAVEFDTHFNSN WDPKSPHIGIDVGSIQSSNATSWGAAYGEVANVFIHYQASTKELTVSLDHPSSKDTYTVSSVVDLKNVLPEYVRVGFSAT TGLNPDHVETNDVLSWSFESDLKAGGPQAAGAFKNNHGLDSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| PIRSF | 2 | 268 | 267 | 1.3E-96 | ||
| Phobius | 10 | 22 | 13 | - | – | |
| PANTHER | 10 | 263 | 254 | 5.9E-90 | – | |
| PANTHER | 10 | 263 | 254 | 5.9E-90 | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 282 | 255 | - | – | |
| Gene3D | 29 | 266 | 238 | 2.2E-75 | – | |
| SUPERFAMILY | 30 | 262 | 233 | 6.53E-80 | ||
| CDD | 31 | 262 | 232 | 5.94391E-89 | ||
| Pfam | 31 | 263 | 233 | 1.6E-63 | ||
| ProSitePatterns | 149 | 155 | 7 | - | ||
| ProSitePatterns | 229 | 238 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi3g1v0029600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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